Wall clock time and date at job start Tue Mar 31 2020 20:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47394 * 2 1 4 4 C 1.53005 * 109.46840 * 239.99916 * 2 1 3 5 5 N 1.46501 * 109.46983 * 120.00552 * 2 1 3 6 6 C 1.34583 * 125.75239 * 75.00127 * 5 2 1 7 7 N 1.30871 * 107.62411 * 180.22002 * 6 5 2 8 8 C 1.34553 * 107.26845 * 359.61805 * 7 6 5 9 9 C 1.47872 * 126.04524 * 180.15232 * 8 7 6 10 10 O 1.21554 * 119.99621 * 180.27358 * 9 8 7 11 11 N 1.34778 * 120.00180 * 0.27195 * 9 8 7 12 12 C 1.46498 * 119.99891 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46999 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.88483 * 305.69977 * 13 12 11 15 15 C 1.54909 * 111.00317 * 69.57812 * 13 12 11 16 16 N 1.47424 * 104.83138 * 155.08316 * 15 13 12 17 17 C 1.36941 * 125.65050 * 155.90672 * 16 15 13 18 18 H 1.08005 * 119.99567 * 359.97438 * 17 16 15 19 19 C 1.38807 * 119.99996 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00426 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46844 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47341 * 119.99458 * 21 19 17 24 24 H 1.48500 * 109.47251 * 239.99853 * 21 19 17 25 25 C 1.47021 * 108.70266 * 335.87808 * 16 15 13 26 26 C 1.54371 * 107.28827 * 1.08711 * 25 16 15 27 27 H 1.08999 * 110.70260 * 263.79605 * 26 25 16 28 28 O 1.42893 * 110.75466 * 140.51250 * 26 25 16 29 29 N 1.28854 * 125.74461 * 254.97200 * 5 2 1 30 30 H 1.09002 * 109.46814 * 299.99893 * 1 2 3 31 31 H 1.09000 * 109.47071 * 60.00048 * 1 2 3 32 32 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46724 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46972 * 300.00012 * 3 2 1 35 35 H 1.08995 * 109.46762 * 60.00040 * 3 2 1 36 36 H 1.08993 * 109.47248 * 299.99859 * 4 2 1 37 37 H 1.08997 * 109.46903 * 60.00525 * 4 2 1 38 38 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 39 39 H 1.08002 * 126.18341 * 359.94812 * 6 5 2 40 40 H 0.97004 * 119.99559 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.46756 * 299.99591 * 12 11 9 42 42 H 1.08998 * 109.47244 * 60.00022 * 12 11 9 43 43 H 1.09005 * 110.37030 * 273.92159 * 15 13 12 44 44 H 1.09004 * 110.36867 * 36.24600 * 15 13 12 45 45 H 0.96994 * 120.00102 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.88678 * 120.47562 * 25 16 15 47 47 H 1.09004 * 109.87591 * 241.48416 * 25 16 15 48 48 H 0.96701 * 114.00316 * 66.48036 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0139 -2.0222 1.3921 7 7 2.5234 -2.2501 2.5758 8 6 2.8501 -1.0576 3.1065 9 6 3.4615 -0.8341 4.4342 10 8 3.7075 0.2962 4.8075 11 7 3.7459 -1.8837 5.2304 12 6 4.3511 -1.6622 6.5461 13 6 4.5699 -3.0082 7.2400 14 1 3.6419 -3.5784 7.2832 15 6 5.6878 -3.8192 6.5385 16 7 6.2089 -4.7228 7.5804 17 6 6.8500 -5.9121 7.3577 18 1 7.0097 -6.2585 6.3472 19 6 7.2937 -6.6730 8.4305 20 7 7.0986 -6.2512 9.6619 21 14 8.1689 -8.2951 8.1266 22 1 8.2622 -8.5409 6.6650 23 1 9.5344 -8.2373 8.7075 24 1 7.4053 -9.3969 8.7656 25 6 5.9268 -4.1351 8.8982 26 6 5.1686 -2.8121 8.6577 27 1 5.8557 -1.9660 8.6727 28 8 4.1313 -2.6399 9.6253 29 7 2.5249 -0.1258 2.2375 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2496 39 1 1.6510 -2.7674 0.6998 40 1 3.5499 -2.7857 4.9323 41 1 5.3090 -1.1564 6.4248 42 1 3.6881 -1.0443 7.1516 43 1 5.2761 -4.3942 5.7091 44 1 6.4753 -3.1532 6.1856 45 1 7.4090 -6.7827 10.4115 46 1 5.3076 -4.8155 9.4827 47 1 6.8611 -3.9397 9.4245 48 1 4.4528 -2.5134 10.5285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958409970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:20 Heat of formation + Delta-G solvation = 31.560899 kcal Electronic energy + Delta-G solvation = -29135.154679 eV Core-core repulsion = 25035.050800 eV Total energy + Delta-G solvation = -4100.103878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.70106 -39.49969 -38.15852 -37.64967 -35.12270 -34.60776 -32.89950 -32.13362 -31.24039 -29.65939 -28.15620 -28.03948 -27.56925 -25.88539 -24.56757 -23.29052 -22.93303 -20.72321 -20.42743 -20.14669 -19.78926 -18.02414 -16.96016 -16.86802 -16.80417 -16.46256 -15.94847 -15.29881 -15.04860 -14.80943 -14.68445 -14.44876 -14.11563 -13.91948 -13.53252 -13.31225 -13.17184 -12.98333 -12.90938 -12.60543 -12.43393 -12.39478 -12.30823 -11.99776 -11.90138 -11.56776 -11.42334 -11.19075 -10.91911 -10.80860 -10.60793 -10.56743 -10.52962 -10.25641 -9.98488 -9.78918 -9.76254 -9.72411 -9.17502 -8.89949 -8.62968 -6.86139 -5.72543 -3.06601 1.29170 1.84089 1.96243 3.06685 3.40074 3.40227 3.45515 3.48087 3.76853 3.98313 4.03280 4.13861 4.43853 4.47245 4.64299 4.78733 4.79825 4.91690 4.97022 5.02616 5.09446 5.10284 5.18749 5.26740 5.32031 5.48741 5.49124 5.54576 5.67338 5.72840 5.84314 5.90973 6.05717 6.08793 6.15411 6.27301 6.30950 6.40200 6.50130 6.61831 6.88487 7.43180 7.50655 7.53687 7.78513 7.90810 8.22582 8.24090 8.25300 9.19473 9.79975 10.44488 11.39244 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002242 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.670335 B =12484.191855 C =13693.924373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.294 5.294 6 C 0.189 3.811 7 N -0.481 5.481 8 C 0.141 3.859 9 C 0.614 3.386 10 O -0.525 6.525 11 N -0.702 5.702 12 C 0.135 3.865 13 C -0.107 4.107 14 H 0.091 0.909 15 C 0.141 3.859 16 N -0.603 5.603 17 C -0.227 4.227 18 H 0.080 0.920 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.152 3.848 26 C 0.083 3.917 27 H 0.057 0.943 28 O -0.566 6.566 29 N -0.248 5.248 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.412 0.588 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.024 0.976 45 H 0.252 0.748 46 H 0.058 0.942 47 H 0.046 0.954 48 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.759 12.901 -20.842 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.219 4.219 5 N -0.091 5.091 6 C -0.107 4.107 7 N -0.206 5.206 8 C -0.138 4.138 9 C 0.395 3.605 10 O -0.398 6.398 11 N -0.354 5.354 12 C 0.012 3.988 13 C -0.127 4.127 14 H 0.109 0.891 15 C 0.014 3.986 16 N -0.330 5.330 17 C -0.355 4.355 18 H 0.098 0.902 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.026 3.974 26 C 0.023 3.977 27 H 0.075 0.925 28 O -0.371 6.371 29 N -0.086 5.086 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.238 0.762 40 H 0.248 0.752 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.692 13.850 -20.660 28.392 hybrid contribution 0.609 -1.517 -0.068 1.636 sum -13.083 12.333 -20.728 27.440 Atomic orbital electron populations 1.22268 0.91715 1.03683 1.04141 1.21168 0.95316 0.94366 0.80678 1.21999 1.02656 0.92226 1.03775 1.22267 1.02799 1.01189 0.95614 1.47795 1.41580 1.06277 1.13440 1.26321 1.01726 0.86419 0.96190 1.71314 1.16323 1.25906 1.07056 1.23788 1.06258 0.85673 0.98116 1.16262 0.78226 0.85002 0.81017 1.90817 1.53028 1.22550 1.73436 1.45733 1.62227 1.09600 1.17794 1.21458 0.98311 0.97519 0.81562 1.22604 1.00776 0.94880 0.94444 0.89068 1.21631 0.92509 0.91965 0.92458 1.44323 1.67617 1.20804 1.00245 1.19126 1.29029 0.94394 0.92948 0.90184 1.24817 1.01312 0.99142 0.95287 1.69951 1.51483 1.38415 0.97224 0.86018 0.78957 0.83264 0.77363 1.20465 1.21766 1.21741 1.21833 0.97601 0.89570 0.88354 1.23120 0.88517 0.98788 0.87281 0.92471 1.86424 1.34983 1.95641 1.20041 1.74281 1.13430 1.25433 0.95503 0.91214 0.89574 0.91286 0.91210 0.90311 0.90507 0.91052 0.89312 0.91064 0.76224 0.75213 0.91027 0.90830 0.93695 0.95845 0.93773 0.92433 0.93616 0.77750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 8.72 37.16 0.32 -0.30 16 2 C 0.17 0.92 1.23 -131.81 -0.16 0.76 16 3 C -0.15 -0.88 8.04 37.16 0.30 -0.58 16 4 C -0.16 -0.49 8.28 37.16 0.31 -0.18 16 5 N -0.29 -2.78 3.17 -49.83 -0.16 -2.94 16 6 C 0.19 1.72 11.71 -90.48 -1.06 0.66 16 7 N -0.48 -6.25 11.09 -12.36 -0.14 -6.39 16 8 C 0.14 2.12 7.96 -156.36 -1.24 0.88 16 9 C 0.61 10.26 7.83 -12.32 -0.10 10.16 16 10 O -0.52 -10.22 17.09 5.32 0.09 -10.13 16 11 N -0.70 -10.80 5.45 -61.24 -0.33 -11.13 16 12 C 0.13 2.16 5.12 -4.04 -0.02 2.14 16 13 C -0.11 -1.93 2.79 -88.47 -0.25 -2.18 16 14 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 15 C 0.14 2.89 6.56 -2.53 -0.02 2.88 16 16 N -0.60 -15.40 3.39 -170.04 -0.58 -15.98 16 17 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.74 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -27.09 10.31 55.49 0.57 -26.51 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.15 3.66 5.15 -3.04 -0.02 3.65 16 26 C 0.08 1.58 3.80 -24.88 -0.09 1.49 16 27 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 28 O -0.57 -10.05 13.39 -35.23 -0.47 -10.52 16 29 N -0.25 -3.39 11.09 32.07 0.36 -3.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.59 8.02 -51.93 -0.42 0.17 16 36 H 0.07 0.13 7.34 -51.93 -0.38 -0.25 16 37 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.22 0.95 7.53 -52.49 -0.40 0.56 16 40 H 0.41 5.97 8.14 -40.82 -0.33 5.64 16 41 H 0.07 1.16 8.03 -51.93 -0.42 0.75 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.02 0.49 7.96 -51.93 -0.41 0.07 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.06 1.56 7.29 -51.93 -0.38 1.18 16 47 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 48 H 0.38 5.18 9.12 45.56 0.42 5.60 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -36.46 395.35 -8.90 -45.36 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.90 Total: 5.65 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -2.28 Total: 12.52 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -0.28 Total: -65.99 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.38 Total: -20.65 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.46 -8.90 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958409970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.923 kcal (2) G-P(sol) polarization free energy of solvation -36.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds