Wall clock time and date at job start Tue Mar 31 2020 20:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47394 * 2 1 4 4 C 1.53005 * 109.46840 * 239.99916 * 2 1 3 5 5 N 1.46501 * 109.46983 * 120.00552 * 2 1 3 6 6 C 1.34583 * 125.75239 * 75.00127 * 5 2 1 7 7 N 1.30871 * 107.62411 * 180.22002 * 6 5 2 8 8 C 1.34553 * 107.26845 * 359.61805 * 7 6 5 9 9 C 1.47872 * 126.04524 * 180.15232 * 8 7 6 10 10 O 1.21554 * 119.99621 * 180.27358 * 9 8 7 11 11 N 1.34778 * 120.00180 * 0.27195 * 9 8 7 12 12 C 1.46498 * 119.99891 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46999 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.88483 * 305.69977 * 13 12 11 15 15 C 1.54909 * 111.00317 * 69.57812 * 13 12 11 16 16 N 1.47424 * 104.83138 * 155.08316 * 15 13 12 17 17 C 1.36941 * 125.65050 * 155.90672 * 16 15 13 18 18 H 1.08005 * 119.99567 * 359.97438 * 17 16 15 19 19 C 1.38807 * 119.99996 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00426 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46844 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47341 * 119.99458 * 21 19 17 24 24 H 1.48500 * 109.47251 * 239.99853 * 21 19 17 25 25 C 1.47021 * 108.70266 * 335.87808 * 16 15 13 26 26 C 1.54371 * 107.28827 * 1.08711 * 25 16 15 27 27 H 1.08999 * 110.70260 * 263.79605 * 26 25 16 28 28 O 1.42893 * 110.75466 * 140.51250 * 26 25 16 29 29 N 1.28854 * 125.74461 * 254.97200 * 5 2 1 30 30 H 1.09002 * 109.46814 * 299.99893 * 1 2 3 31 31 H 1.09000 * 109.47071 * 60.00048 * 1 2 3 32 32 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46724 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46972 * 300.00012 * 3 2 1 35 35 H 1.08995 * 109.46762 * 60.00040 * 3 2 1 36 36 H 1.08993 * 109.47248 * 299.99859 * 4 2 1 37 37 H 1.08997 * 109.46903 * 60.00525 * 4 2 1 38 38 H 1.09004 * 109.47006 * 179.97438 * 4 2 1 39 39 H 1.08002 * 126.18341 * 359.94812 * 6 5 2 40 40 H 0.97004 * 119.99559 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.46756 * 299.99591 * 12 11 9 42 42 H 1.08998 * 109.47244 * 60.00022 * 12 11 9 43 43 H 1.09005 * 110.37030 * 273.92159 * 15 13 12 44 44 H 1.09004 * 110.36867 * 36.24600 * 15 13 12 45 45 H 0.96994 * 120.00102 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.88678 * 120.47562 * 25 16 15 47 47 H 1.09004 * 109.87591 * 241.48416 * 25 16 15 48 48 H 0.96701 * 114.00316 * 66.48036 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0139 -2.0222 1.3921 7 7 2.5234 -2.2501 2.5758 8 6 2.8501 -1.0576 3.1065 9 6 3.4615 -0.8341 4.4342 10 8 3.7075 0.2962 4.8075 11 7 3.7459 -1.8837 5.2304 12 6 4.3511 -1.6622 6.5461 13 6 4.5699 -3.0082 7.2400 14 1 3.6419 -3.5784 7.2832 15 6 5.6878 -3.8192 6.5385 16 7 6.2089 -4.7228 7.5804 17 6 6.8500 -5.9121 7.3577 18 1 7.0097 -6.2585 6.3472 19 6 7.2937 -6.6730 8.4305 20 7 7.0986 -6.2512 9.6619 21 14 8.1689 -8.2951 8.1266 22 1 8.2622 -8.5409 6.6650 23 1 9.5344 -8.2373 8.7075 24 1 7.4053 -9.3969 8.7656 25 6 5.9268 -4.1351 8.8982 26 6 5.1686 -2.8121 8.6577 27 1 5.8557 -1.9660 8.6727 28 8 4.1313 -2.6399 9.6253 29 7 2.5249 -0.1258 2.2375 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2496 39 1 1.6510 -2.7674 0.6998 40 1 3.5499 -2.7857 4.9323 41 1 5.3090 -1.1564 6.4248 42 1 3.6881 -1.0443 7.1516 43 1 5.2761 -4.3942 5.7091 44 1 6.4753 -3.1532 6.1856 45 1 7.4090 -6.7827 10.4115 46 1 5.3076 -4.8155 9.4827 47 1 6.8611 -3.9397 9.4245 48 1 4.4528 -2.5134 10.5285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958409970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:19 Heat of formation + Delta-G solvation = 3.969594 kcal Electronic energy + Delta-G solvation = -29136.351127 eV Core-core repulsion = 25035.050800 eV Total energy + Delta-G solvation = -4101.300327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.54145 -40.83025 -39.72343 -38.21366 -36.64772 -36.18206 -34.13626 -33.56906 -32.21042 -31.29519 -29.34896 -28.47383 -28.39327 -27.46470 -26.06837 -24.37687 -24.00996 -22.30391 -21.67394 -21.22111 -21.08838 -19.16800 -18.73291 -18.17426 -17.64464 -17.49607 -17.24006 -16.86967 -16.35982 -15.97293 -15.71760 -15.56931 -15.12463 -15.03950 -14.80878 -14.63082 -14.40494 -14.00835 -13.79079 -13.69613 -13.28784 -13.23419 -13.21147 -13.10033 -13.02330 -12.76082 -12.74957 -12.46791 -12.37939 -12.25772 -11.99369 -11.92092 -11.78351 -11.64541 -11.47472 -11.41549 -11.32463 -10.81872 -10.73473 -10.61815 -10.17116 -8.93085 -7.85824 -5.22321 0.30216 1.09451 1.15354 1.46913 1.47810 1.58297 1.96696 2.23842 2.48510 3.05970 3.22912 3.28704 3.35381 3.56352 3.66807 3.68527 3.77685 3.80615 3.88263 3.90393 4.14592 4.40630 4.44801 4.55597 4.59449 4.60177 4.61751 4.69664 4.72363 4.78682 4.81232 4.86974 4.93005 4.94773 5.11131 5.17515 5.18935 5.22733 5.33094 5.37983 5.42698 5.49675 5.68304 5.71897 6.17099 6.30064 6.89745 6.91087 7.07901 7.09470 7.74147 8.37764 9.24591 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002242 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.670335 B =12484.191855 C =13693.924373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.149 4.149 4 C -0.156 4.156 5 N -0.286 5.286 6 C 0.201 3.799 7 N -0.505 5.505 8 C 0.113 3.887 9 C 0.613 3.387 10 O -0.561 6.561 11 N -0.694 5.694 12 C 0.147 3.853 13 C -0.089 4.089 14 H 0.086 0.914 15 C 0.139 3.861 16 N -0.625 5.625 17 C -0.240 4.240 18 H 0.086 0.914 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.980 3.020 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.161 3.839 26 C 0.098 3.902 27 H 0.079 0.921 28 O -0.569 6.569 29 N -0.270 5.270 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.270 0.730 40 H 0.417 0.583 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.031 0.969 45 H 0.247 0.753 46 H 0.020 0.980 47 H 0.015 0.985 48 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 12.693 -23.985 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.206 4.206 4 C -0.214 4.214 5 N -0.083 5.083 6 C -0.093 4.093 7 N -0.231 5.231 8 C -0.166 4.166 9 C 0.396 3.604 10 O -0.438 6.438 11 N -0.345 5.345 12 C 0.024 3.976 13 C -0.109 4.109 14 H 0.105 0.895 15 C 0.014 3.986 16 N -0.352 5.352 17 C -0.369 4.369 18 H 0.104 0.896 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.809 3.191 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.035 3.965 26 C 0.038 3.962 27 H 0.096 0.904 28 O -0.376 6.376 29 N -0.110 5.110 30 H 0.065 0.935 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.286 0.714 40 H 0.254 0.746 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.038 0.962 47 H 0.033 0.967 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -15.042 13.648 -23.837 31.317 hybrid contribution 0.956 -1.407 0.796 1.878 sum -14.086 12.242 -23.040 29.650 Atomic orbital electron populations 1.22287 0.90038 1.04635 1.04405 1.21679 0.96524 0.94031 0.80151 1.22017 1.01459 0.93026 1.04127 1.22311 1.01925 1.02341 0.94851 1.48220 1.40093 1.06760 1.13189 1.27200 0.99615 0.86977 0.95510 1.71253 1.17601 1.25434 1.08829 1.23434 1.08293 0.86866 0.97984 1.16507 0.77657 0.84492 0.81729 1.90781 1.54712 1.23787 1.74485 1.45622 1.61810 1.09731 1.17383 1.21257 0.98568 0.95998 0.81806 1.22395 0.99441 0.95408 0.93663 0.89546 1.21771 0.93270 0.91660 0.91865 1.44626 1.67645 1.21015 1.01917 1.19524 1.28758 0.95367 0.93274 0.89612 1.25683 1.02595 1.02642 0.95185 1.70167 1.52584 1.39512 0.97845 0.84979 0.77299 0.78966 0.77902 1.18828 1.21954 1.21958 1.21609 0.96096 0.91288 0.87469 1.22876 0.88697 0.96530 0.88119 0.90371 1.86392 1.34616 1.95369 1.21225 1.74207 1.13972 1.26267 0.96590 0.93464 0.86787 0.89990 0.93055 0.87145 0.92953 0.89145 0.86729 0.92477 0.71441 0.74590 0.90857 0.90538 0.92821 0.95147 0.94373 0.96185 0.96681 0.75680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 8.72 71.98 0.63 -0.12 16 2 C 0.16 1.35 1.23 3.61 0.00 1.36 16 3 C -0.15 -1.60 8.04 71.98 0.58 -1.02 16 4 C -0.16 -0.39 8.28 71.98 0.60 0.21 16 5 N -0.29 -4.98 3.17 -311.57 -0.99 -5.96 16 6 C 0.20 3.18 11.71 180.30 2.11 5.29 16 7 N -0.51 -12.55 11.09 -193.03 -2.14 -14.69 16 8 C 0.11 3.38 7.96 137.13 1.09 4.47 16 9 C 0.61 20.72 7.83 86.79 0.68 21.40 16 10 O -0.56 -22.32 17.09 -3.89 -0.07 -22.38 16 11 N -0.69 -21.10 5.45 -465.94 -2.54 -23.64 16 12 C 0.15 4.60 5.12 86.38 0.44 5.04 16 13 C -0.09 -3.16 2.79 -9.40 -0.03 -3.18 16 14 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 15 C 0.14 5.66 6.56 86.86 0.57 6.23 16 16 N -0.62 -32.31 3.39 -691.88 -2.35 -34.66 16 17 C -0.24 -13.53 10.28 84.03 0.86 -12.67 16 18 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 19 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 20 N -0.95 -57.51 10.31 21.65 0.22 -57.29 16 21 Si 0.98 46.01 29.55 68.60 2.03 48.03 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 C 0.16 7.98 5.15 86.75 0.45 8.43 16 26 C 0.10 3.70 3.80 31.80 0.12 3.82 16 27 H 0.08 2.66 8.04 -2.39 -0.02 2.64 16 28 O -0.57 -19.69 13.39 -148.98 -1.99 -21.69 16 29 N -0.27 -7.38 11.09 -52.44 -0.58 -7.96 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.05 0.82 8.02 -2.39 -0.02 0.80 16 36 H 0.09 -0.09 7.34 -2.39 -0.02 -0.11 16 37 H 0.11 -0.26 8.14 -2.39 -0.02 -0.27 16 38 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.27 1.10 7.53 -2.91 -0.02 1.08 16 40 H 0.42 11.84 8.14 -92.71 -0.76 11.09 16 41 H 0.07 2.31 8.03 -2.39 -0.02 2.29 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.03 1.22 7.96 -2.39 -0.02 1.20 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.02 1.13 7.29 -2.39 -0.02 1.11 16 47 H 0.02 0.82 7.50 -2.38 -0.02 0.81 16 48 H 0.39 10.51 9.12 -74.06 -0.68 9.84 16 Total: -1.00 -82.70 395.35 -0.28 -82.98 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.45 Total: 21.44 kcal Atomic # 6 Polarization: 27.24 SS G_CDS: 8.57 Total: 35.82 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -8.37 Total: -144.20 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -2.06 Total: -44.07 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -82.70 -0.28 -82.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958409970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.952 kcal (2) G-P(sol) polarization free energy of solvation -82.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds