Wall clock time and date at job start Tue Mar 31 2020 20:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47019 * 2 1 4 4 C 1.52999 * 109.46832 * 120.00253 * 2 1 3 5 5 N 1.46501 * 109.46770 * 239.99921 * 2 1 3 6 6 C 1.34811 * 126.59186 * 74.71452 * 5 2 1 7 7 C 1.36592 * 106.83852 * 179.90489 * 6 5 2 8 8 C 1.47526 * 125.77189 * 180.13263 * 7 6 5 9 9 O 1.21590 * 120.00113 * 0.24693 * 8 7 6 10 10 N 1.34779 * 120.00025 * 180.23988 * 8 7 6 11 11 C 1.46502 * 119.99852 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47081 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.51135 * 305.00360 * 12 11 10 14 14 C 1.53291 * 109.51308 * 184.89942 * 12 11 10 15 15 N 1.47152 * 108.38649 * 187.77594 * 14 12 11 16 16 C 1.36939 * 120.97967 * 230.55672 * 15 14 12 17 17 H 1.08001 * 120.00287 * 26.24203 * 16 15 14 18 18 C 1.38811 * 119.99740 * 206.23426 * 16 15 14 19 19 N 1.31621 * 119.99890 * 16.91395 * 18 16 15 20 20 Si 1.86799 * 119.99981 * 196.90676 * 18 16 15 21 21 H 1.48497 * 109.47240 * 60.00552 * 20 18 16 22 22 H 1.48509 * 109.47184 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47169 * 300.00102 * 20 18 16 24 24 C 1.47151 * 118.03415 * 50.53127 * 15 14 12 25 25 C 1.53294 * 108.38569 * 309.46806 * 24 15 14 26 26 O 1.42955 * 109.26496 * 52.27849 * 25 24 15 27 27 N 1.34399 * 108.45818 * 0.36395 * 7 6 5 28 28 N 1.28757 * 109.52280 * 359.77426 * 27 7 6 29 29 H 1.08998 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46896 * 59.99437 * 1 2 3 31 31 H 1.09001 * 109.46545 * 299.99773 * 1 2 3 32 32 H 1.08998 * 109.46789 * 60.00588 * 3 2 1 33 33 H 1.09004 * 109.46539 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47339 * 300.00164 * 3 2 1 35 35 H 1.08998 * 109.47293 * 59.99961 * 4 2 1 36 36 H 1.09004 * 109.47131 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.47095 * 299.99425 * 4 2 1 38 38 H 1.08004 * 126.58273 * 0.03769 * 6 5 2 39 39 H 0.96993 * 120.00113 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.47174 * 300.00210 * 11 10 8 41 41 H 1.09004 * 109.47146 * 60.00414 * 11 10 8 42 42 H 1.09004 * 109.67820 * 307.49587 * 14 12 11 43 43 H 1.08997 * 109.68257 * 68.00902 * 14 12 11 44 44 H 0.97007 * 119.99634 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.68107 * 69.19115 * 24 15 14 46 46 H 1.09006 * 109.67641 * 189.70945 * 24 15 14 47 47 H 1.09001 * 109.51187 * 172.23114 * 25 24 15 48 48 H 1.09000 * 109.51345 * 292.37734 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.0183 -0.6906 -1.1962 6 6 2.0171 -0.2128 -2.4568 7 6 2.5623 -1.1834 -3.2483 8 6 2.7633 -1.0944 -4.7071 9 8 2.4356 -0.0881 -5.3057 10 7 3.3102 -2.1286 -5.3763 11 6 3.5103 -2.0400 -6.8249 12 6 4.1416 -3.3378 -7.3329 13 1 5.0590 -3.5375 -6.7792 14 6 4.4639 -3.2006 -8.8253 15 7 4.8925 -4.5146 -9.3303 16 6 6.0508 -4.6503 -10.0481 17 1 6.8579 -3.9463 -9.9089 18 6 6.1875 -5.6927 -10.9544 19 7 5.1233 -6.3433 -11.3746 20 14 7.8819 -6.1721 -11.5779 21 1 8.7341 -6.5791 -10.4319 22 1 7.7569 -7.3054 -12.5294 23 1 8.5015 -5.0126 -12.2685 24 6 4.0400 -5.6785 -9.0407 25 6 3.7384 -5.6950 -7.5378 26 8 3.2258 -4.4195 -7.1456 27 7 2.8799 -2.2351 -2.4742 28 7 2.5711 -1.9779 -1.2510 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 0.5138 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 -1.7490 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1392 38 1 1.6565 0.7530 -2.7787 39 1 3.5714 -2.9315 -4.8989 40 1 2.5491 -1.8874 -7.3158 41 1 4.1703 -1.2022 -7.0500 42 1 3.5749 -2.8724 -9.3641 43 1 5.2652 -2.4746 -8.9626 44 1 5.2189 -7.0720 -12.0077 45 1 3.1085 -5.5998 -9.6012 46 1 4.5611 -6.5940 -9.3212 47 1 2.9987 -6.4663 -7.3233 48 1 4.6543 -5.9042 -6.9849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035400366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:05 Heat of formation + Delta-G solvation = 11.733866 kcal Electronic energy + Delta-G solvation = -29041.089031 eV Core-core repulsion = 24940.125388 eV Total energy + Delta-G solvation = -4100.963643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.31833 -40.71725 -39.87055 -38.29094 -36.51423 -35.79452 -33.41345 -33.03871 -32.56553 -31.63336 -29.25271 -28.46737 -28.41027 -27.26433 -25.08171 -24.74505 -24.38466 -23.08797 -21.89335 -21.51370 -20.69252 -18.95132 -18.60955 -17.57756 -17.36288 -17.22701 -17.04401 -16.83323 -16.18031 -15.86365 -15.70472 -15.59050 -15.46216 -15.07985 -14.99061 -14.91905 -14.59208 -14.41811 -13.69071 -13.63877 -13.36820 -13.31054 -13.21407 -13.18138 -12.99278 -12.77013 -12.65953 -12.53312 -12.44848 -12.33755 -12.18393 -12.09384 -11.96122 -11.86587 -11.40373 -11.27520 -11.23121 -10.79226 -10.53586 -10.44561 -10.06825 -8.75145 -7.90574 -5.37901 0.15440 0.60963 1.04054 1.47335 1.49659 1.56623 2.06544 2.22451 2.48797 2.78531 3.16728 3.24083 3.25529 3.49500 3.65511 3.72229 3.77847 3.92208 3.97395 4.08683 4.20373 4.25239 4.46179 4.52615 4.53740 4.58398 4.61165 4.62073 4.68426 4.72547 4.74864 4.79547 4.80312 4.82739 4.89943 5.06686 5.08601 5.20238 5.24796 5.27258 5.32186 5.55154 5.55495 5.61176 6.26038 6.32977 6.39254 6.90064 7.06322 7.09829 7.74624 8.28564 9.15429 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.001932 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.463138 B =14486.860595 C =14636.677947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 C -0.160 4.160 4 C -0.148 4.148 5 N -0.338 5.338 6 C 0.109 3.891 7 C -0.123 4.123 8 C 0.605 3.395 9 O -0.569 6.569 10 N -0.702 5.702 11 C 0.141 3.859 12 C 0.077 3.923 13 H 0.066 0.934 14 C 0.118 3.882 15 N -0.613 5.613 16 C -0.267 4.267 17 H 0.073 0.927 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.275 1.275 24 C 0.144 3.856 25 C 0.053 3.947 26 O -0.391 6.391 27 N -0.229 5.229 28 N -0.084 5.084 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.230 0.770 39 H 0.413 0.587 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.022 0.978 43 H 0.075 0.925 44 H 0.252 0.748 45 H 0.000 1.000 46 H 0.068 0.932 47 H 0.107 0.893 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 15.942 27.969 33.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.218 4.218 4 C -0.205 4.205 5 N -0.124 5.124 6 C -0.050 4.050 7 C -0.263 4.263 8 C 0.390 3.610 9 O -0.448 6.448 10 N -0.352 5.352 11 C 0.018 3.982 12 C 0.017 3.983 13 H 0.083 0.917 14 C -0.008 4.008 15 N -0.337 5.337 16 C -0.396 4.396 17 H 0.091 0.909 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.800 3.200 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.200 1.200 24 C 0.018 3.982 25 C -0.024 4.024 26 O -0.310 6.310 27 N -0.102 5.102 28 N -0.063 5.063 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.247 0.753 39 H 0.249 0.751 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.039 0.961 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.086 0.914 47 H 0.125 0.875 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.885 15.312 28.341 33.416 hybrid contribution 0.801 -0.363 -1.438 1.686 sum -8.084 14.949 26.903 31.822 Atomic orbital electron populations 1.22322 0.90467 1.03389 1.05492 1.21610 0.96218 0.93273 0.81135 1.22346 1.02124 0.91386 1.05989 1.22024 1.01815 1.01146 0.95554 1.51205 1.40603 1.12571 1.08046 1.23629 0.96552 1.01105 0.83690 1.21400 1.14823 0.94474 0.95608 1.16933 0.76855 0.82794 0.84431 1.90776 1.53257 1.31595 1.69131 1.45693 1.62088 1.18733 1.08709 1.21302 1.01693 0.95812 0.79441 1.22685 0.92324 0.86825 0.96467 0.91655 1.21592 0.98395 0.88540 0.92277 1.44331 1.24636 1.02467 1.62298 1.19524 0.91902 1.12677 1.15530 0.90891 1.25850 1.00614 1.00934 0.97315 1.70191 1.29016 1.24947 1.33995 0.85264 0.79645 0.77430 0.77627 1.20228 1.22039 1.20030 1.21303 0.92806 0.91919 0.92151 1.23158 0.99081 0.84899 0.95295 1.87810 1.41712 1.16151 1.85337 1.74645 1.13849 1.23201 0.98509 1.81883 1.16577 0.95807 1.12064 0.92775 0.91002 0.86783 0.86695 0.92107 0.90318 0.92155 0.92410 0.87128 0.75334 0.75064 0.91167 0.88506 0.96053 0.90655 0.93938 0.98144 0.91383 0.87504 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 8.73 71.98 0.63 -0.17 16 2 C 0.16 1.25 1.25 3.61 0.00 1.26 16 3 C -0.16 -0.54 8.31 71.98 0.60 0.05 16 4 C -0.15 -1.11 8.11 71.98 0.58 -0.53 16 5 N -0.34 -5.51 3.44 -306.89 -1.06 -6.57 16 6 C 0.11 1.92 10.43 83.85 0.87 2.79 16 7 C -0.12 -3.09 6.99 40.82 0.29 -2.81 16 8 C 0.60 17.55 7.82 86.69 0.68 18.23 16 9 O -0.57 -18.61 16.86 -4.00 -0.07 -18.67 16 10 N -0.70 -20.34 5.50 -466.26 -2.57 -22.90 16 11 C 0.14 4.30 5.34 86.38 0.46 4.76 16 12 C 0.08 2.70 2.81 30.69 0.09 2.78 16 13 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 14 C 0.12 4.97 6.02 86.35 0.52 5.49 16 15 N -0.61 -31.31 3.05 -697.55 -2.13 -33.44 16 16 C -0.27 -14.67 9.65 84.03 0.81 -13.86 16 17 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 18 C -0.05 -2.89 4.95 84.86 0.42 -2.47 16 19 N -0.94 -55.54 11.14 21.65 0.24 -55.30 16 20 Si 0.97 44.72 29.59 68.60 2.03 46.75 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C 0.14 7.11 5.45 86.35 0.47 7.58 16 25 C 0.05 2.09 6.98 72.08 0.50 2.59 16 26 O -0.39 -14.92 10.33 -148.98 -1.54 -16.46 16 27 N -0.23 -6.22 12.04 -50.00 -0.60 -6.82 16 28 N -0.08 -1.99 12.91 37.02 0.48 -1.51 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.06 0.36 8.14 -2.38 -0.02 0.35 16 34 H 0.08 0.18 7.45 -2.39 -0.02 0.16 16 35 H 0.06 0.66 8.06 -2.39 -0.02 0.64 16 36 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.23 2.49 7.64 -2.91 -0.02 2.46 16 39 H 0.41 11.72 8.16 -92.71 -0.76 10.96 16 40 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.08 2.95 7.96 -2.39 -0.02 2.93 16 44 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 45 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.07 3.70 6.14 -2.38 -0.01 3.69 16 47 H 0.11 3.62 8.14 -2.39 -0.02 3.61 16 48 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -73.70 394.62 1.92 -71.78 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.21 Total: 17.47 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 6.92 Total: 25.69 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.63 Total: -126.55 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.61 Total: -35.14 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -73.70 1.92 -71.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035400366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.510 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds