Wall clock time and date at job start Tue Mar 31 2020 20:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47437 * 2 1 4 4 C 1.53001 * 109.47269 * 239.99926 * 2 1 3 5 5 N 1.46500 * 109.47201 * 120.00274 * 2 1 3 6 6 C 1.34585 * 125.75011 * 74.99764 * 5 2 1 7 7 N 1.30875 * 107.62484 * 179.73221 * 6 5 2 8 8 C 1.34549 * 107.26703 * 0.38677 * 7 6 5 9 9 C 1.47870 * 126.04810 * 179.86500 * 8 7 6 10 10 O 1.21554 * 120.00100 * 179.68728 * 9 8 7 11 11 N 1.34783 * 119.99710 * 359.69819 * 9 8 7 12 12 C 1.46501 * 119.99965 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47195 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.51228 * 304.90238 * 13 12 11 15 15 C 1.52874 * 109.62721 * 184.90811 * 13 12 11 16 16 N 1.47146 * 108.61038 * 187.90024 * 15 13 12 17 17 C 1.36938 * 120.98166 * 230.49961 * 16 15 13 18 18 H 1.08000 * 120.00437 * 26.46046 * 17 16 15 19 19 C 1.38817 * 120.00106 * 206.45559 * 17 16 15 20 20 N 1.31620 * 119.99788 * 16.42248 * 19 17 16 21 21 Si 1.86802 * 119.99867 * 196.14101 * 19 17 16 22 22 H 1.48493 * 109.47220 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46793 * 120.00703 * 21 19 17 24 24 H 1.48501 * 109.47003 * 240.00077 * 21 19 17 25 25 C 1.47152 * 118.03553 * 50.22601 * 16 15 13 26 26 C 1.53291 * 108.38463 * 309.71610 * 25 16 15 27 27 O 1.42958 * 109.22268 * 52.30270 * 26 25 16 28 28 N 1.28849 * 125.74548 * 254.97111 * 5 2 1 29 29 H 1.09001 * 109.46991 * 300.00280 * 1 2 3 30 30 H 1.09005 * 109.46761 * 59.99653 * 1 2 3 31 31 H 1.08990 * 109.47519 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47195 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47199 * 299.99780 * 3 2 1 34 34 H 1.09001 * 109.47259 * 59.99884 * 3 2 1 35 35 H 1.08997 * 109.47356 * 300.00745 * 4 2 1 36 36 H 1.09008 * 109.46963 * 59.99978 * 4 2 1 37 37 H 1.08999 * 109.47528 * 180.02562 * 4 2 1 38 38 H 1.08001 * 126.18556 * 359.97438 * 6 5 2 39 39 H 0.97002 * 119.99921 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.46907 * 59.99826 * 12 11 9 41 41 H 1.08995 * 109.47254 * 300.00014 * 12 11 9 42 42 H 1.09004 * 109.61801 * 68.08073 * 15 13 12 43 43 H 1.09002 * 109.52448 * 307.66775 * 15 13 12 44 44 H 0.96997 * 119.99644 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.68009 * 69.44637 * 25 16 15 46 46 H 1.08998 * 109.67837 * 189.95158 * 25 16 15 47 47 H 1.09002 * 109.50962 * 172.22809 * 26 25 16 48 48 H 1.08996 * 109.51452 * 292.32644 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1961 6 6 2.0139 -2.0221 1.3922 7 7 2.5331 -2.2508 2.5716 8 6 2.8502 -1.0576 3.1065 9 6 3.4618 -0.8340 4.4340 10 8 3.7083 0.2963 4.8071 11 7 3.7462 -1.8836 5.2303 12 6 4.3527 -1.6622 6.5454 13 6 4.5700 -3.0080 7.2399 14 1 3.6261 -3.5512 7.2845 15 6 5.0887 -2.7756 8.6591 16 7 5.4694 -4.0736 9.2383 17 6 5.0141 -4.4557 10.4720 18 1 4.0819 -4.0620 10.8493 19 6 5.7508 -5.3491 11.2376 20 7 7.0132 -5.5805 10.9460 21 14 4.9525 -6.2169 12.6864 22 1 3.5375 -5.7824 12.8053 23 1 5.0027 -7.6855 12.4725 24 1 5.6828 -5.8731 13.9329 25 6 6.3487 -4.9515 8.4501 26 6 5.7643 -5.0802 7.0388 27 8 5.5280 -3.7747 6.5063 28 7 2.5249 -0.1257 2.2375 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7217 -1.2490 38 1 1.6513 -2.7674 0.6997 39 1 3.5493 -2.7856 4.9327 40 1 3.6906 -1.0437 7.1513 41 1 5.3109 -1.1571 6.4232 42 1 4.3059 -2.3188 9.2646 43 1 5.9582 -2.1191 8.6262 44 1 7.5281 -6.2045 11.4812 45 1 7.3473 -4.5179 8.3959 46 1 6.4005 -5.9347 8.9178 47 1 6.4694 -5.6120 6.3999 48 1 4.8252 -5.6318 7.0826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035508310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:32 Heat of formation + Delta-G solvation = 35.378846 kcal Electronic energy + Delta-G solvation = -29117.267408 eV Core-core repulsion = 25017.329088 eV Total energy + Delta-G solvation = -4099.938320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.71912 -39.49980 -38.37487 -37.68198 -34.89254 -34.25124 -32.87883 -31.63280 -31.20767 -30.51935 -28.17871 -28.06569 -27.58308 -25.97028 -24.10536 -23.27092 -23.09960 -21.72297 -20.57576 -20.42352 -19.58332 -18.05423 -16.97361 -16.83391 -16.69234 -16.08859 -15.93428 -15.11148 -14.93141 -14.89726 -14.74600 -14.37847 -14.23636 -14.06495 -13.69589 -13.37160 -13.18229 -13.08884 -13.01328 -12.91851 -12.69346 -12.45183 -12.32954 -12.32090 -11.93128 -11.58500 -11.52746 -11.10214 -10.85543 -10.68462 -10.62206 -10.58247 -10.37036 -10.23817 -10.18460 -9.95499 -9.74032 -9.61842 -9.02193 -8.92248 -8.53104 -6.72860 -5.82491 -3.26381 1.27762 1.82340 1.94558 3.05805 3.35171 3.39519 3.43035 3.45347 3.75056 3.96251 4.01499 4.12121 4.28577 4.42885 4.44965 4.66225 4.76947 4.89994 4.95086 5.02166 5.08455 5.17117 5.17370 5.29986 5.35184 5.47317 5.53953 5.55429 5.66338 5.82236 5.85505 5.90095 6.07379 6.13263 6.20101 6.29063 6.32699 6.41377 6.52342 6.54792 6.79188 7.13751 7.50342 7.55093 7.73203 7.89457 7.90847 8.25018 8.35494 9.13353 9.75963 10.33041 11.25714 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.001943 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.149675 B =14409.109397 C =14554.396985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.294 5.294 6 C 0.188 3.812 7 N -0.481 5.481 8 C 0.142 3.858 9 C 0.612 3.388 10 O -0.525 6.525 11 N -0.698 5.698 12 C 0.132 3.868 13 C 0.065 3.935 14 H 0.060 0.940 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.253 4.253 18 H 0.069 0.931 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.388 6.388 28 N -0.248 5.248 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.413 0.587 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.254 0.746 45 H 0.028 0.972 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.944 8.074 -26.980 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.091 5.091 6 C -0.108 4.108 7 N -0.206 5.206 8 C -0.137 4.137 9 C 0.394 3.606 10 O -0.399 6.399 11 N -0.350 5.350 12 C 0.008 3.992 13 C 0.005 3.995 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.318 5.318 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.013 3.987 26 C -0.038 4.038 27 O -0.308 6.308 28 N -0.086 5.086 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.249 0.751 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.379 9.228 -26.435 30.614 hybrid contribution -0.629 -1.328 0.517 1.558 sum -13.008 7.900 -25.917 30.055 Atomic orbital electron populations 1.22266 0.91705 1.03668 1.04165 1.21167 0.95324 0.94379 0.80661 1.22000 1.02653 0.92212 1.03797 1.22267 1.02779 1.01168 0.95636 1.47793 1.41525 1.06284 1.13478 1.26314 1.01671 0.86424 0.96347 1.71311 1.16260 1.25927 1.07137 1.23792 1.06254 0.85616 0.98082 1.16272 0.78297 0.85014 0.81037 1.90822 1.53099 1.22541 1.73394 1.45649 1.61917 1.09638 1.17755 1.21504 0.98869 0.96802 0.81999 1.22719 0.92426 0.90743 0.93581 0.92216 1.21359 0.98328 0.89789 0.91069 1.44050 1.57306 1.13408 1.17003 1.19242 1.01947 1.24305 0.92774 0.91296 1.25062 0.94869 1.01878 0.97935 1.70044 1.06135 1.37392 1.41135 0.86177 0.78815 0.79397 0.82110 1.20206 1.21517 1.21648 1.21448 0.92029 0.97687 0.87490 1.23317 0.99572 0.83133 0.97773 1.87804 1.61925 1.28053 1.52976 1.74291 1.13485 1.25431 0.95414 0.91202 0.89563 0.91303 0.91216 0.90308 0.90481 0.91084 0.89298 0.91081 0.76263 0.75108 0.89743 0.90266 0.91704 0.95165 0.93572 0.95340 0.88812 0.90053 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 8.72 37.16 0.32 -0.26 16 2 C 0.17 0.88 1.23 -131.82 -0.16 0.72 16 3 C -0.15 -0.85 8.04 37.16 0.30 -0.56 16 4 C -0.16 -0.45 8.28 37.16 0.31 -0.14 16 5 N -0.29 -2.71 3.17 -49.84 -0.16 -2.87 16 6 C 0.19 1.65 11.71 -90.48 -1.06 0.59 16 7 N -0.48 -6.12 11.09 -12.36 -0.14 -6.26 16 8 C 0.14 2.11 7.96 -156.35 -1.24 0.87 16 9 C 0.61 10.20 7.83 -12.32 -0.10 10.11 16 10 O -0.53 -10.19 17.09 5.32 0.09 -10.10 16 11 N -0.70 -10.77 5.50 -61.24 -0.34 -11.11 16 12 C 0.13 2.11 5.35 -4.04 -0.02 2.09 16 13 C 0.07 1.18 2.80 -26.80 -0.07 1.10 16 14 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 15 C 0.12 2.57 6.00 -3.75 -0.02 2.55 16 16 N -0.59 -15.00 3.05 -172.09 -0.53 -15.53 16 17 C -0.25 -6.93 9.65 -15.06 -0.15 -7.07 16 18 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 19 C 0.00 0.03 4.95 -17.43 -0.09 -0.05 16 20 N -0.90 -26.14 11.15 55.49 0.62 -25.52 16 21 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.14 3.35 5.44 -3.54 -0.02 3.33 16 26 C 0.04 0.78 6.98 37.31 0.26 1.04 16 27 O -0.39 -7.55 10.33 -35.23 -0.36 -7.91 16 28 N -0.25 -3.34 11.09 32.07 0.36 -2.99 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.58 8.02 -51.93 -0.42 0.17 16 35 H 0.07 0.11 7.34 -51.93 -0.38 -0.27 16 36 H 0.09 0.08 8.14 -51.92 -0.42 -0.34 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.22 0.86 7.53 -52.49 -0.40 0.47 16 39 H 0.41 6.05 8.18 -40.82 -0.33 5.72 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.29 7.96 -51.93 -0.41 0.88 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -35.08 393.68 -9.02 -44.10 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.73 Total: 1.37 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: -1.74 Total: 14.33 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.18 Total: -64.27 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.27 Total: -18.01 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.08 -9.02 -44.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035508310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.482 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds