Wall clock time and date at job start Tue Mar 31 2020 20:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47034 * 2 1 4 4 C 1.53005 * 109.47309 * 120.00046 * 2 1 3 5 5 N 1.46502 * 109.47193 * 240.00056 * 2 1 3 6 6 C 1.34583 * 125.74837 * 74.71211 * 5 2 1 7 7 N 1.30873 * 107.62771 * 179.87046 * 6 5 2 8 8 C 1.34552 * 107.26422 * 0.38868 * 7 6 5 9 9 C 1.47874 * 126.04692 * 179.78693 * 8 7 6 10 10 O 1.21547 * 119.99718 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99609 * 359.96572 * 9 8 7 12 12 C 1.46499 * 119.99782 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47225 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.51545 * 59.99849 * 13 12 11 15 15 C 1.53306 * 109.51334 * 180.10048 * 13 12 11 16 16 N 1.47151 * 108.38200 * 172.22493 * 15 13 12 17 17 C 1.36940 * 120.97883 * 129.48896 * 16 15 13 18 18 H 1.08006 * 119.99815 * 206.21915 * 17 16 15 19 19 C 1.38805 * 120.00024 * 26.21666 * 17 16 15 20 20 N 1.31614 * 120.00453 * 16.91826 * 19 17 16 21 21 Si 1.86805 * 119.99900 * 196.92161 * 19 17 16 22 22 H 1.48498 * 109.47102 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47238 * 119.99972 * 21 19 17 24 24 H 1.48506 * 109.46826 * 240.00267 * 21 19 17 25 25 C 1.47145 * 118.03741 * 309.46388 * 16 15 13 26 26 C 1.53290 * 108.38751 * 50.53732 * 25 16 15 27 27 O 1.42956 * 109.26779 * 307.72351 * 26 25 16 28 28 N 1.28851 * 125.74659 * 255.02865 * 5 2 1 29 29 H 1.09001 * 109.47403 * 59.99747 * 1 2 3 30 30 H 1.09002 * 109.47107 * 299.99588 * 1 2 3 31 31 H 1.08998 * 109.47306 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46838 * 60.00247 * 3 2 1 33 33 H 1.09005 * 109.46966 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47232 * 300.00358 * 3 2 1 35 35 H 1.08994 * 109.46741 * 59.99611 * 4 2 1 36 36 H 1.08989 * 109.47035 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.46833 * 300.00161 * 4 2 1 38 38 H 1.08004 * 126.18639 * 0.02562 * 6 5 2 39 39 H 0.97002 * 120.00146 * 359.97438 * 11 9 8 40 40 H 1.09009 * 109.47042 * 299.99722 * 12 11 9 41 41 H 1.08996 * 109.47439 * 59.99421 * 12 11 9 42 42 H 1.09001 * 109.67978 * 291.94797 * 15 13 12 43 43 H 1.08997 * 109.68013 * 52.46519 * 15 13 12 44 44 H 0.97004 * 120.00547 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.68201 * 170.26643 * 25 16 15 46 46 H 1.09005 * 109.68381 * 290.77344 * 25 16 15 47 47 H 1.09001 * 109.51507 * 67.61891 * 26 25 16 48 48 H 1.09003 * 109.51562 * 187.77072 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 2.0183 -0.6906 -1.1962 6 6 2.0089 -0.1968 -2.4481 7 7 2.5273 -1.1042 -3.2360 8 6 2.8487 -2.1622 -2.4693 9 6 3.4596 -3.4240 -2.9396 10 8 3.7056 -4.3124 -2.1474 11 7 3.7435 -3.5890 -4.2468 12 6 4.3493 -4.8388 -4.7127 13 6 4.5661 -4.7676 -6.2255 14 1 5.2282 -3.9340 -6.4596 15 6 5.1978 -6.0761 -6.7145 16 7 5.2228 -6.0580 -8.1856 17 6 6.3733 -6.3357 -8.8745 18 1 6.5211 -5.9303 -9.8646 19 6 7.3494 -7.1383 -8.3003 20 7 7.0536 -7.8961 -7.2656 21 14 9.0831 -7.1429 -8.9960 22 1 9.1556 -6.2118 -10.1506 23 1 10.0387 -6.7063 -7.9466 24 1 9.4328 -8.5148 -9.4444 25 6 3.9751 -5.7331 -8.8947 26 6 3.4030 -4.4414 -8.2996 27 8 3.3092 -4.5773 -6.8796 28 7 2.5240 -1.8753 -1.2277 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1299 -0.7209 1.2494 37 1 1.6767 -0.2074 2.1392 38 1 1.6424 0.7739 -2.7480 39 1 3.5468 -2.8801 -4.8791 40 1 5.3077 -4.9859 -4.2145 41 1 3.6871 -5.6726 -4.4798 42 1 6.2147 -6.1586 -6.3309 43 1 4.6048 -6.9222 -6.3672 44 1 7.7359 -8.4567 -6.8641 45 1 4.1823 -5.5885 -9.9550 46 1 3.2588 -6.5449 -8.7682 47 1 4.0605 -3.6064 -8.5420 48 1 2.4118 -4.2574 -8.7140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035508311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:36 Heat of formation + Delta-G solvation = 35.614662 kcal Electronic energy + Delta-G solvation = -29307.718446 eV Core-core repulsion = 25207.790352 eV Total energy + Delta-G solvation = -4099.928094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.66611 -39.39955 -38.33548 -37.63751 -34.78527 -34.26777 -32.82544 -31.45413 -31.21448 -30.63791 -28.14606 -28.02386 -27.42921 -25.98757 -24.04132 -23.24969 -23.16419 -21.59838 -20.47754 -20.36592 -19.57686 -17.98652 -16.98720 -16.78010 -16.67472 -15.99247 -15.82671 -15.17840 -14.87634 -14.75700 -14.71576 -14.30505 -14.25235 -13.99860 -13.72428 -13.31945 -13.20881 -13.06288 -12.91329 -12.85274 -12.75020 -12.41823 -12.27937 -12.18969 -11.88923 -11.54657 -11.48339 -11.08265 -10.83358 -10.68822 -10.57263 -10.53155 -10.38486 -10.22460 -10.12064 -9.94217 -9.68363 -9.60570 -9.03449 -8.79274 -8.52815 -6.73173 -5.82285 -3.25897 1.33843 1.87344 2.00733 3.15037 3.36161 3.43836 3.45872 3.47967 3.78945 4.01404 4.05136 4.15544 4.31352 4.46132 4.48290 4.72975 4.79790 4.93403 4.98185 5.06480 5.11909 5.20840 5.23425 5.32784 5.38240 5.50767 5.58800 5.68485 5.70722 5.87957 5.91397 5.98946 6.06891 6.16417 6.18132 6.28886 6.33937 6.40935 6.54405 6.68988 6.82043 7.10673 7.51278 7.60775 7.73512 7.89627 7.97122 8.34587 8.36289 9.13005 9.76099 10.33212 11.25772 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.002153 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.797324 B =12999.361750 C =13499.218348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.160 4.160 4 C -0.149 4.149 5 N -0.294 5.294 6 C 0.187 3.813 7 N -0.481 5.481 8 C 0.144 3.856 9 C 0.610 3.390 10 O -0.524 6.524 11 N -0.697 5.697 12 C 0.134 3.866 13 C 0.055 3.945 14 H 0.057 0.943 15 C 0.152 3.848 16 N -0.594 5.594 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.109 3.891 26 C 0.051 3.949 27 O -0.389 6.389 28 N -0.248 5.248 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.221 0.779 39 H 0.412 0.588 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.032 0.968 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.043 0.957 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 21.350 14.464 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.218 4.218 4 C -0.207 4.207 5 N -0.091 5.091 6 C -0.109 4.109 7 N -0.207 5.207 8 C -0.136 4.136 9 C 0.391 3.609 10 O -0.398 6.398 11 N -0.349 5.349 12 C 0.010 3.990 13 C -0.004 4.004 14 H 0.075 0.925 15 C 0.026 3.974 16 N -0.318 5.318 17 C -0.384 4.384 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.216 1.216 25 C -0.017 4.017 26 C -0.027 4.027 27 O -0.308 6.308 28 N -0.087 5.087 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.237 0.763 39 H 0.248 0.752 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.062 0.938 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.215 20.120 15.360 28.555 hybrid contribution 0.839 0.620 -0.833 1.335 sum -12.377 20.741 14.527 28.185 Atomic orbital electron populations 1.22269 0.91733 1.03996 1.03822 1.21158 0.95311 0.92436 0.82619 1.22262 1.02752 0.92643 1.04154 1.21998 1.02647 1.01719 0.94300 1.47786 1.41623 1.10400 1.09325 1.26302 1.01813 1.01503 0.81254 1.71310 1.16274 1.00808 1.32266 1.23839 1.06102 0.96926 0.86717 1.16293 0.78427 0.83235 0.82908 1.90826 1.52986 1.41369 1.54586 1.45671 1.62052 1.19854 1.07274 1.21515 0.99034 0.85544 0.92891 1.23148 0.86042 1.01362 0.89861 0.92461 1.21314 1.01307 0.90650 0.84149 1.44051 1.05501 1.81457 1.00807 1.19226 0.93672 1.24525 1.01002 0.91309 1.25059 0.99617 0.96114 0.98887 1.70024 1.32594 1.26688 1.25237 0.86199 0.84649 0.77391 0.78388 1.20247 1.21431 1.21649 1.21607 0.89530 0.94408 0.96201 1.22998 1.00125 0.98289 0.81329 1.87789 1.29732 1.93785 1.19503 1.74299 1.13563 0.98684 1.22112 0.91313 0.89594 0.91180 0.89327 0.91106 0.91107 0.90459 0.91220 0.90336 0.76311 0.75217 0.89607 0.90358 0.88531 0.94975 0.93448 0.92001 0.95552 0.93828 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 8.71 37.16 0.32 -0.33 16 2 C 0.17 0.95 1.22 -131.82 -0.16 0.79 16 3 C -0.16 -0.50 8.29 37.16 0.31 -0.19 16 4 C -0.15 -0.93 8.04 37.16 0.30 -0.63 16 5 N -0.29 -2.87 3.17 -49.83 -0.16 -3.03 16 6 C 0.19 1.73 11.71 -90.48 -1.06 0.67 16 7 N -0.48 -6.39 11.09 -12.36 -0.14 -6.53 16 8 C 0.14 2.25 7.96 -156.35 -1.24 1.00 16 9 C 0.61 10.87 7.83 -12.32 -0.10 10.77 16 10 O -0.52 -10.88 17.09 5.32 0.09 -10.79 16 11 N -0.70 -11.63 5.45 -61.24 -0.33 -11.97 16 12 C 0.13 2.41 5.37 -4.05 -0.02 2.39 16 13 C 0.06 1.09 2.86 -26.58 -0.08 1.01 16 14 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 15 C 0.15 3.65 4.73 -3.53 -0.02 3.64 16 16 N -0.59 -15.00 3.05 -171.83 -0.52 -15.52 16 17 C -0.26 -6.97 9.65 -15.06 -0.15 -7.11 16 18 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 19 C 0.00 0.06 4.95 -17.44 -0.09 -0.03 16 20 N -0.90 -26.10 11.14 55.49 0.62 -25.48 16 21 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.11 2.30 6.73 -3.54 -0.02 2.28 16 26 C 0.05 0.91 6.98 37.31 0.26 1.17 16 27 O -0.39 -7.53 10.14 -35.23 -0.36 -7.89 16 28 N -0.25 -3.52 11.09 32.08 0.36 -3.17 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.13 7.35 -51.93 -0.38 -0.25 16 35 H 0.08 0.63 8.02 -51.93 -0.42 0.21 16 36 H 0.07 0.52 8.14 -51.94 -0.42 0.10 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.22 0.94 7.54 -52.48 -0.40 0.55 16 39 H 0.41 6.44 8.06 -40.82 -0.33 6.11 16 40 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.10 2.53 6.14 -51.93 -0.32 2.21 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -35.05 393.42 -9.01 -44.06 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.72 Total: 2.38 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: -1.74 Total: 15.44 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -0.18 Total: -65.70 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.27 Total: -18.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.05 -9.01 -44.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035508311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.676 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds