Wall clock time and date at job start Tue Mar 31 2020 19:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46990 * 2 1 4 4 C 1.36593 * 126.57585 * 269.97982 * 3 2 1 5 5 C 1.47525 * 125.77383 * 359.97438 * 4 3 2 6 6 O 1.21589 * 119.99784 * 359.73395 * 5 4 3 7 7 N 1.34774 * 120.00102 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00284 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47441 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.51487 * 59.99493 * 9 8 7 11 11 C 1.53295 * 109.51345 * 180.10132 * 9 8 7 12 12 N 1.47152 * 108.38517 * 172.22277 * 11 9 8 13 13 C 1.36939 * 120.98235 * 129.48459 * 12 11 9 14 14 H 1.07995 * 119.99916 * 206.22952 * 13 12 11 15 15 C 1.38808 * 119.99912 * 26.22296 * 13 12 11 16 16 N 1.31624 * 119.99843 * 16.91400 * 15 13 12 17 17 Si 1.86803 * 120.00173 * 196.90640 * 15 13 12 18 18 H 1.48501 * 109.46970 * 90.00222 * 17 15 13 19 19 H 1.48498 * 109.47354 * 210.00531 * 17 15 13 20 20 H 1.48499 * 109.46913 * 330.00781 * 17 15 13 21 21 C 1.47150 * 118.03729 * 309.46650 * 12 11 9 22 22 C 1.53291 * 108.38725 * 50.52904 * 21 12 11 23 23 O 1.42954 * 109.26812 * 307.72820 * 22 21 12 24 24 N 1.34406 * 108.45748 * 180.26369 * 4 3 2 25 25 N 1.28765 * 109.52022 * 359.60863 * 24 4 3 26 26 N 1.34809 * 126.58147 * 90.01954 * 3 2 1 27 27 C 1.46502 * 126.59589 * 359.96137 * 26 3 2 28 28 C 1.53001 * 109.46867 * 89.99854 * 27 26 3 29 29 H 1.08994 * 109.47258 * 60.00080 * 1 2 3 30 30 H 1.09004 * 109.46646 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47125 * 299.99729 * 1 2 3 32 32 H 1.08996 * 109.46989 * 239.99634 * 2 1 3 33 33 H 1.09001 * 109.47100 * 119.99542 * 2 1 3 34 34 H 0.97002 * 119.99879 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47061 * 299.99881 * 8 7 5 36 36 H 1.09002 * 109.47136 * 59.99550 * 8 7 5 37 37 H 1.09003 * 109.68013 * 291.94583 * 11 9 8 38 38 H 1.08996 * 109.68336 * 52.45938 * 11 9 8 39 39 H 0.97002 * 119.99376 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.68443 * 170.25968 * 21 12 11 41 41 H 1.09010 * 109.67791 * 290.77143 * 21 12 11 42 42 H 1.08999 * 109.51349 * 67.62571 * 22 21 12 43 43 H 1.09000 * 109.51378 * 187.77416 * 22 21 12 44 44 H 1.08996 * 109.47432 * 210.00390 * 27 26 3 45 45 H 1.08998 * 109.47006 * 330.00415 * 27 26 3 46 46 H 1.08999 * 109.47025 * 179.97438 * 28 27 26 47 47 H 1.08996 * 109.47532 * 300.00474 * 28 27 26 48 48 H 1.09007 * 109.46662 * 60.00488 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3040 2.1881 -1.0969 5 6 2.1559 1.7661 -2.5027 6 8 1.7652 0.6444 -2.7627 7 7 2.4593 2.6218 -3.4988 8 6 2.3117 2.2028 -4.8948 9 6 2.7197 3.3525 -5.8182 10 1 3.7587 3.6212 -5.6278 11 6 2.5632 2.9159 -7.2793 12 7 2.7793 4.0897 -8.1401 13 6 3.6511 4.0393 -9.1950 14 1 4.1245 4.9436 -9.5479 15 6 3.9264 2.8260 -9.8105 16 7 3.1284 1.7964 -9.6218 17 14 5.4291 2.6546 -10.9069 18 1 6.5908 2.2205 -10.0901 19 1 5.1599 1.6440 -11.9612 20 1 5.7311 3.9630 -11.5409 21 6 2.0308 5.3191 -7.8342 22 6 2.2131 5.6385 -6.3461 23 8 1.8811 4.4838 -5.5715 24 7 2.7352 3.3906 -0.6790 25 7 2.7409 3.4220 0.6083 26 7 2.3005 2.1782 1.0825 27 6 2.1589 1.7786 2.4849 28 6 3.4694 1.1579 2.9731 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.7747 3.5153 -3.2913 35 1 2.9506 1.3404 -5.0849 36 1 1.2726 1.9343 -5.0857 37 1 3.3002 2.1479 -7.5140 38 1 1.5594 2.5225 -7.4394 39 1 3.3206 0.9486 -10.0523 40 1 2.4151 6.1424 -8.4362 41 1 0.9731 5.1684 -8.0510 42 1 3.2501 5.9164 -6.1577 43 1 1.5580 6.4641 -6.0680 44 1 1.9237 2.6539 3.0902 45 1 1.3551 1.0479 2.5750 46 1 3.3642 0.8610 4.0165 47 1 3.7045 0.2825 2.3677 48 1 4.2732 1.8886 2.8829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035509780.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:25 Heat of formation + Delta-G solvation = 29.644393 kcal Electronic energy + Delta-G solvation = -29598.821809 eV Core-core repulsion = 25498.634825 eV Total energy + Delta-G solvation = -4100.186984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.45803 -39.32136 -38.29839 -36.09961 -34.83698 -34.32017 -33.97058 -31.42974 -31.11890 -30.68791 -29.86497 -27.35952 -25.85216 -24.92923 -24.06931 -23.33409 -23.06446 -21.62771 -20.67400 -20.38695 -19.58025 -17.99422 -16.98839 -16.44647 -16.32319 -15.91958 -15.66015 -15.13944 -15.02742 -14.85202 -14.56629 -14.31383 -14.22875 -14.03883 -13.75637 -13.47728 -13.21056 -13.01912 -12.87323 -12.76236 -12.73679 -12.58111 -12.17136 -12.13381 -11.70918 -11.57033 -11.46294 -11.09960 -11.07615 -10.82760 -10.70417 -10.44298 -10.37952 -10.23526 -10.04079 -9.88622 -9.60814 -9.31534 -9.03085 -8.75718 -8.53110 -6.73858 -5.82959 -3.26536 0.95364 1.66944 1.78058 3.30431 3.36668 3.37840 3.43146 3.44350 3.94490 3.98826 4.30049 4.30944 4.35509 4.45690 4.55022 4.60367 4.79373 4.91714 4.96062 5.08048 5.18968 5.23060 5.32937 5.37706 5.46816 5.54295 5.57316 5.66428 5.68426 5.83685 5.91603 5.93109 5.99322 6.07326 6.16331 6.20478 6.29640 6.40912 6.54764 6.70486 6.81711 7.10021 7.50152 7.61930 7.72814 7.89408 7.90551 8.33954 8.35662 9.12538 9.75439 10.32635 11.25116 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019208 B = 0.002365 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.387770 B =11835.931215 C =12251.612326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C 0.126 3.874 4 C -0.099 4.099 5 C 0.600 3.400 6 O -0.541 6.541 7 N -0.702 5.702 8 C 0.133 3.867 9 C 0.054 3.946 10 H 0.057 0.943 11 C 0.153 3.847 12 N -0.595 5.595 13 C -0.255 4.255 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.050 3.950 23 O -0.389 6.389 24 N -0.201 5.201 25 N -0.070 5.070 26 N -0.362 5.362 27 C 0.116 3.884 28 C -0.172 4.172 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.410 0.590 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.032 0.968 39 H 0.256 0.744 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 -2.638 25.704 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.012 4.012 4 C -0.239 4.239 5 C 0.384 3.616 6 O -0.418 6.418 7 N -0.352 5.352 8 C 0.010 3.990 9 C -0.005 4.005 10 H 0.075 0.925 11 C 0.026 3.974 12 N -0.318 5.318 13 C -0.384 4.384 14 H 0.087 0.913 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.735 3.265 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.017 4.017 22 C -0.028 4.028 23 O -0.308 6.308 24 N -0.074 5.074 25 N -0.049 5.049 26 N -0.148 5.148 27 C -0.005 4.005 28 C -0.230 4.230 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.920 -2.178 25.940 26.194 hybrid contribution 0.796 -0.496 -0.755 1.204 sum -2.125 -2.674 25.185 25.416 Atomic orbital electron populations 1.21673 0.93059 1.02898 1.02379 1.20500 0.97342 0.87253 1.05396 1.21940 0.96732 0.96206 0.86338 1.21294 1.14749 0.92267 0.95587 1.16712 0.77745 0.84712 0.82427 1.90757 1.47813 1.19677 1.83562 1.45773 1.66146 1.17272 1.06021 1.21476 1.02914 0.96611 0.78002 1.23156 0.93398 0.85984 0.97988 0.92544 1.21308 1.01211 0.90860 0.83991 1.44049 1.48056 1.08237 1.31490 1.19202 1.16968 0.94415 1.07852 0.91333 1.25058 0.98872 0.97350 0.98379 1.70023 1.35780 1.02463 1.46348 0.86245 0.82812 0.77541 0.79911 1.21346 1.21664 1.20416 1.21607 0.95609 0.91070 0.93434 1.22999 0.99358 0.87276 0.93136 1.87787 1.57538 1.21428 1.64070 1.74632 1.10685 1.18046 1.04080 1.81973 1.20301 0.99176 1.03470 1.50475 1.45692 1.11200 1.07425 1.21983 1.00131 1.02088 0.76294 1.22200 0.96569 1.01841 1.02380 0.91320 0.91037 0.93276 0.86323 0.90455 0.75460 0.89737 0.90471 0.88568 0.95023 0.93423 0.91998 0.95552 0.93826 0.90012 0.87545 0.88057 0.89719 0.91595 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.90 37.16 0.37 -0.75 16 2 C -0.07 -0.56 5.44 -27.88 -0.15 -0.71 16 3 C 0.13 1.40 6.27 -81.88 -0.51 0.89 16 4 C -0.10 -1.41 6.99 -83.55 -0.58 -2.00 16 5 C 0.60 9.55 7.82 -12.48 -0.10 9.46 16 6 O -0.54 -9.32 14.71 5.29 0.08 -9.24 16 7 N -0.70 -11.29 5.45 -61.35 -0.33 -11.62 16 8 C 0.13 2.33 5.37 -4.04 -0.02 2.31 16 9 C 0.05 1.06 2.86 -26.58 -0.08 0.98 16 10 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 11 C 0.15 3.64 4.73 -3.53 -0.02 3.62 16 12 N -0.59 -14.99 3.05 -171.83 -0.52 -15.51 16 13 C -0.26 -6.96 9.65 -15.06 -0.15 -7.11 16 14 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 15 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 16 N -0.90 -25.94 11.14 55.49 0.62 -25.33 16 17 Si 0.91 21.55 29.59 -169.99 -5.03 16.52 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.11 2.31 6.74 -3.54 -0.02 2.29 16 22 C 0.05 0.92 6.98 37.31 0.26 1.18 16 23 O -0.39 -7.55 10.14 -35.23 -0.36 -7.91 16 24 N -0.20 -2.98 12.04 32.85 0.40 -2.59 16 25 N -0.07 -0.93 13.78 60.35 0.83 -0.09 16 26 N -0.36 -3.58 3.63 -56.85 -0.21 -3.79 16 27 C 0.12 0.59 6.87 -4.04 -0.03 0.56 16 28 C -0.17 -0.71 10.24 37.16 0.38 -0.33 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.12 1.24 6.42 -51.93 -0.33 0.91 16 33 H 0.08 0.43 7.82 -51.93 -0.41 0.02 16 34 H 0.41 6.40 8.04 -40.82 -0.33 6.07 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 41 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.29 7.76 -51.93 -0.40 -0.12 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 LS Contribution 393.97 15.07 5.94 5.94 Total: -1.00 -33.03 393.97 -7.00 -40.02 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.67 Total: 3.23 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.74 Total: 10.37 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.78 Total: -58.93 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.28 Total: -17.15 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.03 -7.00 -40.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035509780.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.667 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds