Wall clock time and date at job start Tue Mar 31 2020 20:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 H 1.08996 * 109.52430 * 305.07910 * 3 2 1 5 5 C 1.53187 * 109.49861 * 65.16360 * 3 2 1 6 6 N 1.46918 * 108.77533 * 174.58622 * 5 3 2 7 7 C 1.34785 * 120.63251 * 126.41150 * 6 5 3 8 8 O 1.21283 * 119.99858 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00126 * 180.02562 * 7 6 5 10 10 N 1.46502 * 109.47434 * 179.97438 * 9 7 6 11 11 N 1.40160 * 126.34852 * 270.02412 * 10 9 7 12 12 C 1.29396 * 108.14164 * 179.97438 * 11 10 9 13 13 N 1.37360 * 108.83197 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.83522 * 180.02562 * 13 12 11 15 15 C 1.34820 * 108.32796 * 359.73554 * 13 12 11 16 16 O 1.21816 * 126.29930 * 180.28941 * 15 13 12 17 17 C 1.46925 * 118.73968 * 306.38910 * 6 5 3 18 18 C 1.53188 * 108.77613 * 53.60879 * 17 6 5 19 19 C 1.53042 * 109.49150 * 184.99699 * 3 2 1 20 20 H 1.08999 * 109.46023 * 58.67873 * 19 3 2 21 21 N 1.46492 * 109.46658 * 298.70154 * 19 3 2 22 22 C 1.36935 * 120.00376 * 155.00230 * 21 19 3 23 23 H 1.08003 * 119.99724 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00063 * 180.02562 * 22 21 19 25 25 N 1.31622 * 119.99887 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00212 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 89.99941 * 26 24 22 28 28 H 1.48503 * 109.47261 * 330.00122 * 26 24 22 29 29 H 1.48500 * 109.47454 * 210.00115 * 26 24 22 30 30 H 1.08999 * 109.47029 * 300.00177 * 1 2 3 31 31 H 1.08996 * 109.47063 * 60.00219 * 1 2 3 32 32 H 1.09002 * 109.46732 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47029 * 239.99823 * 2 1 3 34 34 H 1.09005 * 109.46944 * 119.99531 * 2 1 3 35 35 H 1.09007 * 109.58824 * 294.36961 * 5 3 2 36 36 H 1.08996 * 109.58964 * 54.65095 * 5 3 2 37 37 H 1.09009 * 109.47189 * 300.00112 * 9 7 6 38 38 H 1.08996 * 109.47364 * 59.99704 * 9 7 6 39 39 H 1.08003 * 125.58721 * 180.02562 * 12 11 10 40 40 H 1.08993 * 109.47235 * 359.97438 * 14 13 12 41 41 H 1.09004 * 109.47212 * 119.98059 * 14 13 12 42 42 H 1.08996 * 109.46921 * 239.97297 * 14 13 12 43 43 H 1.08999 * 109.58665 * 173.39949 * 17 6 5 44 44 H 1.09007 * 109.58384 * 293.67864 * 17 6 5 45 45 H 1.09002 * 109.49733 * 185.41830 * 18 17 6 46 46 H 1.08993 * 109.50070 * 65.31666 * 18 17 6 47 47 H 0.97009 * 119.99477 * 335.00815 * 21 19 3 48 48 H 0.97006 * 119.99732 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6386 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4857 4.5565 1.5681 8 8 0.2898 4.4405 1.7333 9 6 2.1226 5.9217 1.6059 10 7 1.0934 6.9341 1.8548 11 7 0.3458 7.6149 0.8841 12 6 -0.4594 8.4257 1.4912 13 7 -0.2704 8.3063 2.8465 14 6 -0.9893 9.0529 3.8818 15 6 0.6854 7.3801 3.0612 16 8 1.1050 7.0146 4.1449 17 6 3.6952 3.5888 1.1498 18 6 4.0737 2.8882 -0.1589 19 6 3.5653 1.4450 -0.1257 20 1 3.8546 0.9370 -1.0456 21 7 4.1508 0.7475 1.0218 22 6 5.3886 0.1718 0.9145 23 1 5.9334 0.2323 -0.0160 24 6 5.9431 -0.4895 2.0017 25 7 7.1331 -1.0424 1.8987 26 14 5.0011 -0.5935 3.6115 27 1 4.1582 -1.8161 3.6137 28 1 4.1357 0.6046 3.7569 29 1 5.9604 -0.6515 4.7436 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 0.5532 2.2162 1.3585 36 1 1.9943 1.5364 2.1548 37 1 2.8652 5.9543 2.4032 38 1 2.6066 6.1235 0.6503 39 1 -1.1647 9.0879 1.0110 40 1 -1.7060 9.7267 3.4123 41 1 -1.5180 8.3555 4.5317 42 1 -0.2788 9.6318 4.4717 43 1 3.9669 4.6428 1.0919 44 1 4.2209 3.1212 1.9824 45 1 5.1578 2.8894 -0.2719 46 1 3.6193 3.4147 -0.9981 47 1 3.6615 0.6935 1.8578 48 1 7.5204 -1.5048 2.6584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037868374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:39 Heat of formation + Delta-G solvation = 33.897402 kcal Electronic energy + Delta-G solvation = -30617.174630 eV Core-core repulsion = 26517.172070 eV Total energy + Delta-G solvation = -4100.002560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59543 -40.20760 -38.05257 -37.37897 -35.43279 -34.63112 -33.87692 -32.09696 -31.77540 -29.88270 -29.34402 -28.28629 -27.10661 -24.99405 -23.96628 -23.19135 -22.85103 -21.57670 -20.89559 -19.87766 -18.43230 -17.99520 -17.77472 -17.34364 -16.56353 -16.29872 -16.02806 -15.61088 -15.23521 -14.85796 -14.64370 -14.46531 -14.13196 -13.81131 -13.67481 -13.45052 -13.36041 -13.16202 -13.14871 -12.70004 -12.55535 -12.46326 -12.34279 -12.09452 -11.92983 -11.61034 -11.29891 -11.11557 -10.97473 -10.85355 -10.65407 -10.42096 -10.40988 -10.38391 -10.21796 -9.83077 -9.67771 -9.57064 -8.97437 -8.71682 -8.41143 -7.30364 -5.80609 -3.15994 1.46370 1.75527 2.50733 2.61085 2.83746 3.18675 3.34244 3.37475 3.44175 4.14053 4.42334 4.45639 4.55469 4.66147 4.88194 4.92705 4.98285 5.07895 5.13373 5.15896 5.17855 5.29403 5.35653 5.51635 5.54661 5.57527 5.61043 5.63763 5.75675 5.83759 5.88523 6.01057 6.03876 6.17880 6.24826 6.27421 6.29309 6.42940 6.48889 6.53665 6.64417 6.74415 6.85952 7.39976 7.49378 7.86725 7.95561 8.18419 8.38581 9.16639 9.89436 10.09030 11.37737 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.003160 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.544344 B = 8858.644108 C = 9503.973199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.119 3.881 6 N -0.600 5.600 7 C 0.499 3.501 8 O -0.538 6.538 9 C 0.144 3.856 10 N -0.435 5.435 11 N -0.272 5.272 12 C 0.252 3.748 13 N -0.563 5.563 14 C 0.102 3.898 15 C 0.651 3.349 16 O -0.550 6.550 17 C 0.109 3.891 18 C -0.150 4.150 19 C 0.185 3.815 20 H 0.061 0.939 21 N -0.744 5.744 22 C -0.241 4.241 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.933 5.933 26 Si 0.877 3.123 27 H -0.284 1.284 28 H -0.278 1.278 29 H -0.291 1.291 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.231 0.769 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.253 20.333 -3.161 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.004 4.004 6 N -0.333 5.333 7 C 0.284 3.716 8 O -0.416 6.416 9 C 0.019 3.981 10 N -0.256 5.256 11 N -0.093 5.093 12 C -0.047 4.047 13 N -0.292 5.292 14 C -0.040 4.040 15 C 0.351 3.649 16 O -0.423 6.423 17 C -0.014 4.014 18 C -0.191 4.191 19 C 0.075 3.925 20 H 0.079 0.921 21 N -0.388 5.388 22 C -0.370 4.370 23 H 0.109 0.891 24 C -0.188 4.188 25 N -0.581 5.581 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.205 1.205 29 H -0.217 1.217 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.247 0.753 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.966 19.512 -3.254 25.421 hybrid contribution -0.746 0.091 1.901 2.045 sum -16.713 19.602 -1.352 25.795 Atomic orbital electron populations 1.21860 0.96640 1.01179 1.01468 1.21432 0.94475 0.95660 1.03329 1.21806 0.97467 0.96219 0.97113 0.90914 1.21683 0.99075 0.81506 0.98088 1.48118 1.08800 1.06366 1.70050 1.20759 0.87404 0.86247 0.77146 1.90686 1.14783 1.86274 1.49812 1.21311 0.87333 0.83507 1.05951 1.48246 1.36425 1.37269 1.03610 1.76961 1.07832 1.08693 1.15815 1.25912 0.99137 0.98755 0.80902 1.45865 1.36914 1.38539 1.07870 1.21785 0.96506 0.95931 0.89739 1.16655 0.81767 0.81385 0.85126 1.91099 1.62621 1.64225 1.24381 1.21832 0.78836 1.00288 1.00412 1.22507 1.02456 0.98860 0.95237 1.20189 0.89363 0.90678 0.92297 0.92063 1.42855 1.19762 1.65809 1.10330 1.19041 0.92112 1.26687 0.99202 0.89132 1.24629 0.96441 1.00266 0.97502 1.69691 1.16259 1.41176 1.30934 0.86684 0.79447 0.77871 0.85231 1.21054 1.20467 1.21746 0.92922 0.93105 0.93018 0.91418 0.91164 0.89354 0.91513 0.85767 0.85628 0.75310 0.88874 0.90518 0.90486 0.91024 0.89763 0.89987 0.92725 0.80589 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.68 37.16 0.36 -1.63 16 2 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 3 C -0.11 -1.62 2.14 -90.50 -0.19 -1.81 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.93 5.03 -3.72 -0.02 1.91 16 6 N -0.60 -9.29 2.97 -172.78 -0.51 -9.80 16 7 C 0.50 7.98 7.77 -10.98 -0.09 7.89 16 8 O -0.54 -10.47 15.84 5.56 0.09 -10.38 16 9 C 0.14 1.84 5.21 -5.19 -0.03 1.81 16 10 N -0.44 -6.03 3.11 -66.31 -0.21 -6.23 16 11 N -0.27 -3.16 12.53 29.87 0.37 -2.79 16 12 C 0.25 1.94 12.61 -89.12 -1.12 0.82 16 13 N -0.56 -5.50 3.14 -130.11 -0.41 -5.91 16 14 C 0.10 0.55 11.08 59.85 0.66 1.22 16 15 C 0.65 9.59 8.61 -86.73 -0.75 8.84 16 16 O -0.55 -10.04 17.77 5.09 0.09 -9.95 16 17 C 0.11 1.56 6.08 -3.71 -0.02 1.54 16 18 C -0.15 -2.25 5.78 -26.61 -0.15 -2.40 16 19 C 0.18 3.20 2.53 -67.89 -0.17 3.03 16 20 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 21 N -0.74 -15.94 3.53 -53.39 -0.19 -16.13 16 22 C -0.24 -6.29 10.41 -15.06 -0.16 -6.45 16 23 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 24 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 25 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 26 Si 0.88 21.70 27.73 -169.99 -4.71 16.99 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 29 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 30 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 35 H 0.09 1.47 5.73 -51.93 -0.30 1.17 16 36 H 0.07 1.18 6.64 -51.93 -0.35 0.84 16 37 H 0.12 1.46 7.91 -51.92 -0.41 1.05 16 38 H 0.13 1.24 7.69 -51.93 -0.40 0.84 16 39 H 0.23 0.38 8.06 -52.48 -0.42 -0.04 16 40 H 0.09 0.12 8.07 -51.93 -0.42 -0.30 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 44 H 0.08 1.42 7.75 -51.93 -0.40 1.02 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.36 7.87 3.81 -40.82 -0.16 7.71 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -37.88 384.51 -8.12 -46.00 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.30 Total: 6.99 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -1.91 Total: 13.09 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -0.17 Total: -68.53 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.18 Total: -20.33 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.88 -8.12 -46.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037868374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.902 kcal (2) G-P(sol) polarization free energy of solvation -37.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds