Wall clock time and date at job start Tue Mar 31 2020 20:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46988 * 2 1 4 4 H 1.09006 * 109.52279 * 305.07691 * 3 2 1 5 5 C 1.53191 * 109.50443 * 65.16155 * 3 2 1 6 6 N 1.46924 * 108.77817 * 174.58846 * 5 3 2 7 7 C 1.34766 * 120.63242 * 126.37005 * 6 5 3 8 8 O 1.21280 * 120.00139 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99940 * 180.02562 * 7 6 5 10 10 N 1.46508 * 109.47098 * 179.97438 * 9 7 6 11 11 N 1.40166 * 126.34892 * 269.69118 * 10 9 7 12 12 C 1.29404 * 108.13652 * 179.88052 * 11 10 9 13 13 N 1.37354 * 108.82988 * 0.37672 * 12 11 10 14 14 C 1.46503 * 125.83554 * 179.73025 * 13 12 11 15 15 C 1.34819 * 108.33856 * 359.76030 * 13 12 11 16 16 O 1.21806 * 126.30493 * 179.97438 * 15 13 12 17 17 C 1.46929 * 118.73409 * 306.38734 * 6 5 3 18 18 C 1.53196 * 108.77486 * 53.61317 * 17 6 5 19 19 C 1.53035 * 109.30995 * 305.36045 * 18 17 6 20 20 H 1.08999 * 109.46561 * 301.34510 * 19 18 17 21 21 N 1.46502 * 109.45725 * 181.38520 * 19 18 17 22 22 C 1.36946 * 119.99958 * 85.00396 * 21 19 18 23 23 H 1.07999 * 119.99714 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99861 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99424 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00145 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47183 * 90.00307 * 26 24 22 28 28 H 1.48505 * 109.47064 * 209.99757 * 26 24 22 29 29 H 1.48496 * 109.47366 * 329.99962 * 26 24 22 30 30 H 1.09005 * 109.46717 * 300.00339 * 1 2 3 31 31 H 1.08996 * 109.46908 * 60.00285 * 1 2 3 32 32 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46824 * 239.99087 * 2 1 3 34 34 H 1.09008 * 109.46606 * 119.99537 * 2 1 3 35 35 H 1.08999 * 109.58565 * 294.37491 * 5 3 2 36 36 H 1.08999 * 109.58540 * 54.79657 * 5 3 2 37 37 H 1.08994 * 109.47226 * 299.99850 * 9 7 6 38 38 H 1.09001 * 109.47128 * 60.00162 * 9 7 6 39 39 H 1.08000 * 125.58636 * 180.14090 * 12 11 10 40 40 H 1.09001 * 109.47379 * 270.03497 * 14 13 12 41 41 H 1.09004 * 109.46666 * 30.02735 * 14 13 12 42 42 H 1.08991 * 109.47269 * 150.02640 * 14 13 12 43 43 H 1.08998 * 109.59209 * 293.82131 * 17 6 5 44 44 H 1.09003 * 109.58217 * 173.39412 * 17 6 5 45 45 H 1.09001 * 109.49651 * 65.31212 * 18 17 6 46 46 H 1.09001 * 109.49244 * 185.40784 * 18 17 6 47 47 H 0.96999 * 120.00216 * 265.00129 * 21 19 18 48 48 H 0.97001 * 119.99799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6386 2.1269 1.3104 6 7 2.2451 3.4645 1.3505 7 6 1.4858 4.5565 1.5670 8 8 0.2898 4.4407 1.7315 9 6 2.1227 5.9218 1.6047 10 7 1.0933 6.9344 1.8526 11 7 0.3509 7.6195 0.8810 12 6 -0.4578 8.4274 1.4874 13 7 -0.2705 8.3075 2.8429 14 6 -0.9891 9.0554 3.8775 15 6 0.6881 7.3844 3.0586 16 8 1.1108 7.0233 4.1424 17 6 3.6953 3.5888 1.1497 18 6 4.0737 2.8880 -0.1590 19 6 3.5653 1.4450 -0.1257 20 1 4.0008 0.9260 0.7281 21 7 3.9542 0.7619 -1.3620 22 6 5.1918 0.1849 -1.4653 23 1 5.8813 0.2337 -0.6354 24 6 5.5601 -0.4628 -2.6365 25 7 6.7498 -1.0170 -2.7358 26 14 4.3673 -0.5479 -4.0715 27 1 4.5686 0.6301 -4.9531 28 1 4.6110 -1.7921 -4.8447 29 1 2.9740 -0.5493 -3.5577 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5533 2.2162 1.3585 36 1 1.9965 1.5378 2.1548 37 1 2.8647 5.9547 2.4025 38 1 2.6073 6.1232 0.6493 39 1 -1.1618 9.0904 1.0066 40 1 -0.4509 9.9768 4.0998 41 1 -1.9908 9.2966 3.5218 42 1 -1.0604 8.4493 4.7806 43 1 4.2210 3.1190 1.9810 44 1 3.9671 4.6428 1.0916 45 1 3.6193 3.4146 -0.9982 46 1 5.1578 2.8893 -0.2720 47 1 3.3350 0.7183 -2.1075 48 1 7.0073 -1.4692 -3.5544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037868375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:43 Heat of formation + Delta-G solvation = 31.471360 kcal Electronic energy + Delta-G solvation = -30124.837099 eV Core-core repulsion = 26024.729338 eV Total energy + Delta-G solvation = -4100.107761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64817 -40.23225 -37.99922 -37.44434 -35.49194 -34.91341 -33.92382 -32.15516 -31.80002 -29.93868 -29.49089 -28.31989 -27.11430 -25.02109 -24.00501 -23.03664 -22.43355 -21.58707 -20.86581 -20.10129 -19.28072 -17.93959 -17.67757 -17.38941 -16.62863 -16.37399 -16.09827 -15.68151 -15.24399 -14.95260 -14.78587 -14.41093 -14.08755 -13.80466 -13.72066 -13.47823 -13.31424 -13.14990 -13.12076 -12.75736 -12.69479 -12.49110 -12.28150 -12.11442 -12.00232 -11.84788 -11.43210 -11.05787 -11.03529 -10.83132 -10.71142 -10.49419 -10.43860 -10.34230 -10.22670 -9.79471 -9.74707 -9.60050 -8.95763 -8.77693 -8.58924 -7.30215 -5.80364 -3.15885 1.40993 1.71446 2.43879 2.51631 2.77736 3.08692 3.35040 3.38472 3.43727 4.11538 4.32245 4.42888 4.56146 4.62220 4.81444 4.84408 4.92127 5.00979 5.09057 5.10660 5.11154 5.18726 5.31748 5.46379 5.50468 5.53278 5.57008 5.57620 5.76357 5.79765 5.90614 5.99621 6.00922 6.07383 6.20672 6.24364 6.26013 6.32226 6.43126 6.52667 6.69103 6.77542 6.92019 7.35002 7.35664 7.80208 7.95261 8.08448 8.38775 9.16947 9.89779 10.09602 11.37860 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.002607 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.575978 B =10739.045503 C =11108.665185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.121 3.879 6 N -0.603 5.603 7 C 0.500 3.500 8 O -0.535 6.535 9 C 0.143 3.857 10 N -0.436 5.436 11 N -0.271 5.271 12 C 0.253 3.747 13 N -0.562 5.562 14 C 0.100 3.900 15 C 0.652 3.348 16 O -0.553 6.553 17 C 0.104 3.896 18 C -0.152 4.152 19 C 0.188 3.812 20 H 0.058 0.942 21 N -0.745 5.745 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.882 3.118 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.277 1.277 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.231 0.769 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.270 20.245 10.549 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.337 5.337 7 C 0.286 3.714 8 O -0.412 6.412 9 C 0.018 3.982 10 N -0.256 5.256 11 N -0.092 5.092 12 C -0.046 4.046 13 N -0.292 5.292 14 C -0.042 4.042 15 C 0.352 3.648 16 O -0.426 6.426 17 C -0.019 4.019 18 C -0.193 4.193 19 C 0.078 3.922 20 H 0.076 0.924 21 N -0.386 5.386 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.712 3.288 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.247 0.753 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.976 19.412 10.559 26.695 hybrid contribution -0.952 0.155 -0.637 1.156 sum -15.927 19.567 9.922 27.111 Atomic orbital electron populations 1.21853 0.96669 1.01164 1.01410 1.21465 0.94526 0.95671 1.03461 1.21833 0.97642 0.96303 0.97014 0.91245 1.21736 0.99487 0.81207 0.97689 1.48143 1.08624 1.06574 1.70361 1.20771 0.87421 0.86236 0.77002 1.90696 1.14739 1.86219 1.49523 1.21312 0.87359 0.83489 1.06004 1.48237 1.36686 1.37051 1.03651 1.77010 1.07860 1.08636 1.15661 1.25916 0.99062 0.98717 0.80900 1.45856 1.36772 1.38633 1.07897 1.21813 0.96161 0.96005 0.90225 1.16641 0.81786 0.81318 0.85087 1.91081 1.62599 1.64610 1.24345 1.21952 0.79155 1.01157 0.99674 1.22660 1.02799 0.98825 0.95059 1.20157 0.90649 0.90661 0.90693 0.92440 1.42777 1.16529 1.66260 1.13082 1.19045 0.90404 1.27302 1.00434 0.89179 1.24657 0.96418 1.00249 0.97705 1.69696 1.19318 1.41540 1.27519 0.86595 0.81159 0.77316 0.83687 1.21179 1.21820 1.20274 0.92997 0.93102 0.93034 0.90381 0.91916 0.89148 0.91308 0.85762 0.85557 0.75263 0.90857 0.89315 0.89436 0.90710 0.90522 0.92111 0.89819 0.80603 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.68 37.16 0.36 -1.67 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.11 -1.66 1.92 -90.50 -0.17 -1.83 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.12 1.71 5.33 -3.71 -0.02 1.69 16 6 N -0.60 -8.15 2.97 -172.77 -0.51 -8.66 16 7 C 0.50 7.31 7.77 -10.99 -0.09 7.22 16 8 O -0.54 -9.80 15.84 5.56 0.09 -9.71 16 9 C 0.14 1.67 5.21 -5.19 -0.03 1.64 16 10 N -0.44 -5.69 3.11 -66.30 -0.21 -5.90 16 11 N -0.27 -3.07 12.53 29.87 0.37 -2.69 16 12 C 0.25 1.86 12.66 -89.12 -1.13 0.74 16 13 N -0.56 -5.12 3.14 -130.10 -0.41 -5.53 16 14 C 0.10 0.47 11.05 59.85 0.66 1.14 16 15 C 0.65 8.94 8.60 -86.73 -0.75 8.19 16 16 O -0.55 -9.30 17.71 5.09 0.09 -9.21 16 17 C 0.10 1.22 6.34 -3.71 -0.02 1.19 16 18 C -0.15 -2.30 5.66 -26.61 -0.15 -2.45 16 19 C 0.19 3.30 2.19 -67.89 -0.15 3.15 16 20 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 21 N -0.74 -16.41 4.13 -53.38 -0.22 -16.63 16 22 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 23 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -28.58 13.97 55.49 0.78 -27.81 16 26 Si 0.88 21.65 27.73 -169.99 -4.71 16.94 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 30 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.39 7.22 -51.93 -0.37 1.01 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.09 1.37 5.73 -51.93 -0.30 1.07 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.12 1.23 7.91 -51.93 -0.41 0.82 16 38 H 0.13 1.17 7.69 -51.93 -0.40 0.77 16 39 H 0.23 0.35 8.06 -52.49 -0.42 -0.08 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.36 8.03 5.38 -40.82 -0.22 7.81 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -38.29 388.07 -8.20 -46.50 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.44 Total: 6.26 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -1.88 Total: 10.59 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.20 Total: -67.21 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.29 -8.20 -46.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037868375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.968 kcal (2) G-P(sol) polarization free energy of solvation -38.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds