Wall clock time and date at job start Tue Mar 31 2020 20:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46988 * 2 1 4 4 H 1.09006 * 109.52279 * 305.07691 * 3 2 1 5 5 C 1.53191 * 109.50443 * 65.16155 * 3 2 1 6 6 N 1.46924 * 108.77817 * 174.58846 * 5 3 2 7 7 C 1.34766 * 120.63242 * 126.37005 * 6 5 3 8 8 O 1.21280 * 120.00139 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99940 * 180.02562 * 7 6 5 10 10 N 1.46508 * 109.47098 * 179.97438 * 9 7 6 11 11 N 1.40166 * 126.34892 * 269.69118 * 10 9 7 12 12 C 1.29404 * 108.13652 * 179.88052 * 11 10 9 13 13 N 1.37354 * 108.82988 * 0.37672 * 12 11 10 14 14 C 1.46503 * 125.83554 * 179.73025 * 13 12 11 15 15 C 1.34819 * 108.33856 * 359.76030 * 13 12 11 16 16 O 1.21806 * 126.30493 * 179.97438 * 15 13 12 17 17 C 1.46929 * 118.73409 * 306.38734 * 6 5 3 18 18 C 1.53196 * 108.77486 * 53.61317 * 17 6 5 19 19 C 1.53035 * 109.30995 * 305.36045 * 18 17 6 20 20 H 1.08999 * 109.46561 * 301.34510 * 19 18 17 21 21 N 1.46502 * 109.45725 * 181.38520 * 19 18 17 22 22 C 1.36946 * 119.99958 * 85.00396 * 21 19 18 23 23 H 1.07999 * 119.99714 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99861 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99424 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00145 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47183 * 90.00307 * 26 24 22 28 28 H 1.48505 * 109.47064 * 209.99757 * 26 24 22 29 29 H 1.48496 * 109.47366 * 329.99962 * 26 24 22 30 30 H 1.09005 * 109.46717 * 300.00339 * 1 2 3 31 31 H 1.08996 * 109.46908 * 60.00285 * 1 2 3 32 32 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46824 * 239.99087 * 2 1 3 34 34 H 1.09008 * 109.46606 * 119.99537 * 2 1 3 35 35 H 1.08999 * 109.58565 * 294.37491 * 5 3 2 36 36 H 1.08999 * 109.58540 * 54.79657 * 5 3 2 37 37 H 1.08994 * 109.47226 * 299.99850 * 9 7 6 38 38 H 1.09001 * 109.47128 * 60.00162 * 9 7 6 39 39 H 1.08000 * 125.58636 * 180.14090 * 12 11 10 40 40 H 1.09001 * 109.47379 * 270.03497 * 14 13 12 41 41 H 1.09004 * 109.46666 * 30.02735 * 14 13 12 42 42 H 1.08991 * 109.47269 * 150.02640 * 14 13 12 43 43 H 1.08998 * 109.59209 * 293.82131 * 17 6 5 44 44 H 1.09003 * 109.58217 * 173.39412 * 17 6 5 45 45 H 1.09001 * 109.49651 * 65.31212 * 18 17 6 46 46 H 1.09001 * 109.49244 * 185.40784 * 18 17 6 47 47 H 0.96999 * 120.00216 * 265.00129 * 21 19 18 48 48 H 0.97001 * 119.99799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6386 2.1269 1.3104 6 7 2.2451 3.4645 1.3505 7 6 1.4858 4.5565 1.5670 8 8 0.2898 4.4407 1.7315 9 6 2.1227 5.9218 1.6047 10 7 1.0933 6.9344 1.8526 11 7 0.3509 7.6195 0.8810 12 6 -0.4578 8.4274 1.4874 13 7 -0.2705 8.3075 2.8429 14 6 -0.9891 9.0554 3.8775 15 6 0.6881 7.3844 3.0586 16 8 1.1108 7.0233 4.1424 17 6 3.6953 3.5888 1.1497 18 6 4.0737 2.8880 -0.1590 19 6 3.5653 1.4450 -0.1257 20 1 4.0008 0.9260 0.7281 21 7 3.9542 0.7619 -1.3620 22 6 5.1918 0.1849 -1.4653 23 1 5.8813 0.2337 -0.6354 24 6 5.5601 -0.4628 -2.6365 25 7 6.7498 -1.0170 -2.7358 26 14 4.3673 -0.5479 -4.0715 27 1 4.5686 0.6301 -4.9531 28 1 4.6110 -1.7921 -4.8447 29 1 2.9740 -0.5493 -3.5577 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5533 2.2162 1.3585 36 1 1.9965 1.5378 2.1548 37 1 2.8647 5.9547 2.4025 38 1 2.6073 6.1232 0.6493 39 1 -1.1618 9.0904 1.0066 40 1 -0.4509 9.9768 4.0998 41 1 -1.9908 9.2966 3.5218 42 1 -1.0604 8.4493 4.7806 43 1 4.2210 3.1190 1.9810 44 1 3.9671 4.6428 1.0916 45 1 3.6193 3.4146 -0.9982 46 1 5.1578 2.8893 -0.2720 47 1 3.3350 0.7183 -2.1075 48 1 7.0073 -1.4692 -3.5544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037868375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:43 Heat of formation + Delta-G solvation = 5.526312 kcal Electronic energy + Delta-G solvation = -30125.962161 eV Core-core repulsion = 26024.729338 eV Total energy + Delta-G solvation = -4101.232823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.42609 -41.39014 -39.29398 -38.42751 -36.36262 -36.23871 -35.38618 -33.61923 -32.94060 -31.52435 -30.55601 -29.23583 -27.84001 -26.43017 -25.19176 -24.26432 -23.58404 -22.43959 -22.20869 -21.39473 -20.48172 -19.47766 -18.78608 -18.44259 -17.55772 -17.18690 -17.08275 -16.72714 -16.61782 -16.24280 -16.03712 -15.58732 -15.26598 -15.11826 -14.72967 -14.64939 -14.58409 -14.32850 -14.19095 -13.97077 -13.57611 -13.48879 -13.38357 -13.26079 -13.11869 -12.92032 -12.89820 -12.69635 -12.59035 -12.17904 -12.02892 -11.85674 -11.65889 -11.59656 -11.55568 -11.42859 -11.14557 -10.92662 -10.71196 -9.76130 -9.66232 -9.25737 -7.98726 -5.30396 0.64878 1.08351 1.39050 1.40071 1.42090 1.47579 1.53497 1.92940 2.28031 2.50236 3.30638 3.33697 3.43360 3.53824 3.72320 3.92703 3.97099 4.05380 4.08489 4.09138 4.20332 4.29636 4.36360 4.39145 4.43930 4.53230 4.58422 4.65028 4.75736 4.78617 4.79538 4.81952 4.88274 4.96066 4.99400 5.02219 5.14591 5.22592 5.31191 5.42635 5.48101 5.60643 5.67689 5.81987 6.25404 6.26816 6.60037 6.89351 6.99350 7.11520 7.88437 8.06660 9.22783 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.002607 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.575978 B =10739.045503 C =11108.665185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.095 4.095 4 H 0.063 0.937 5 C 0.126 3.874 6 N -0.602 5.602 7 C 0.498 3.502 8 O -0.577 6.577 9 C 0.141 3.859 10 N -0.446 5.446 11 N -0.313 5.313 12 C 0.279 3.721 13 N -0.559 5.559 14 C 0.092 3.908 15 C 0.632 3.368 16 O -0.599 6.599 17 C 0.109 3.891 18 C -0.144 4.144 19 C 0.181 3.819 20 H 0.048 0.952 21 N -0.747 5.747 22 C -0.215 4.215 23 H 0.062 0.938 24 C -0.063 4.063 25 N -0.984 5.984 26 Si 0.946 3.054 27 H -0.282 1.282 28 H -0.301 1.301 29 H -0.255 1.255 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.289 0.711 40 H 0.091 0.909 41 H 0.130 0.870 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.362 0.638 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.668 22.886 10.543 30.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.115 4.115 4 H 0.081 0.919 5 C 0.003 3.997 6 N -0.334 5.334 7 C 0.286 3.714 8 O -0.456 6.456 9 C 0.016 3.984 10 N -0.265 5.265 11 N -0.134 5.134 12 C -0.019 4.019 13 N -0.287 5.287 14 C -0.048 4.048 15 C 0.331 3.669 16 O -0.476 6.476 17 C -0.013 4.013 18 C -0.185 4.185 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.389 5.389 22 C -0.346 4.346 23 H 0.080 0.920 24 C -0.254 4.254 25 N -0.635 5.635 26 Si 0.775 3.225 27 H -0.208 1.208 28 H -0.228 1.228 29 H -0.179 1.179 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.157 0.843 38 H 0.169 0.831 39 H 0.304 0.696 40 H 0.109 0.891 41 H 0.148 0.852 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.131 0.869 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.195 0.805 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.428 22.119 10.573 30.079 hybrid contribution -0.259 -0.582 -0.525 0.826 sum -17.687 21.537 10.047 29.624 Atomic orbital electron populations 1.21788 0.94869 1.02014 1.01750 1.21424 0.96111 0.95211 1.02282 1.21673 0.95618 0.96588 0.97577 0.91886 1.21623 0.99210 0.81769 0.97078 1.48198 1.09212 1.06178 1.69817 1.21324 0.86954 0.87291 0.75876 1.90668 1.16599 1.86888 1.51460 1.21474 0.87405 0.81627 1.07873 1.48392 1.37038 1.37162 1.03901 1.77021 1.09829 1.10644 1.15903 1.27117 0.97724 0.97171 0.79903 1.46132 1.35516 1.37532 1.09481 1.22174 0.98135 0.95614 0.88893 1.17043 0.82756 0.82322 0.84783 1.91023 1.64347 1.66392 1.25877 1.22029 0.78116 1.03190 0.97979 1.22459 1.01749 0.97141 0.97120 1.20401 0.92305 0.91612 0.88358 0.93353 1.42782 1.14902 1.66517 1.14693 1.18998 0.91244 1.25422 0.98979 0.91970 1.25376 0.98155 1.01169 1.00749 1.69866 1.21681 1.43771 1.28205 0.85541 0.80096 0.76702 0.80207 1.20843 1.22801 1.17928 0.92193 0.93192 0.91974 0.92914 0.91688 0.89821 0.90345 0.84268 0.83051 0.69571 0.89096 0.85199 0.91329 0.89489 0.86875 0.92210 0.91141 0.80492 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.68 71.98 0.70 -2.97 16 2 C -0.11 -3.32 5.31 30.59 0.16 -3.16 16 3 C -0.09 -2.81 1.92 -10.72 -0.02 -2.83 16 4 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 5 C 0.13 3.40 5.33 86.36 0.46 3.86 16 6 N -0.60 -15.23 2.97 -818.91 -2.43 -17.66 16 7 C 0.50 13.90 7.77 87.66 0.68 14.58 16 8 O -0.58 -20.80 15.84 -3.03 -0.05 -20.84 16 9 C 0.14 3.03 5.21 85.63 0.45 3.48 16 10 N -0.45 -11.03 3.11 -481.76 -1.50 -12.53 16 11 N -0.31 -6.37 12.53 -59.42 -0.74 -7.11 16 12 C 0.28 3.13 12.66 179.82 2.28 5.41 16 13 N -0.56 -8.88 3.14 -683.69 -2.15 -11.03 16 14 C 0.09 0.63 11.05 127.77 1.41 2.04 16 15 C 0.63 16.80 8.60 178.99 1.54 18.34 16 16 O -0.60 -20.34 17.71 -4.69 -0.08 -20.42 16 17 C 0.11 2.31 6.34 86.36 0.55 2.86 16 18 C -0.14 -4.16 5.66 30.67 0.17 -3.99 16 19 C 0.18 6.24 2.19 45.02 0.10 6.34 16 20 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 21 N -0.75 -32.70 4.13 -322.81 -1.33 -34.03 16 22 C -0.22 -11.64 10.41 84.03 0.87 -10.77 16 23 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 24 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 25 N -0.98 -62.05 13.97 21.65 0.30 -61.75 16 26 Si 0.95 45.12 27.73 68.60 1.90 47.03 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 29 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 30 H 0.06 1.40 6.70 -2.38 -0.02 1.39 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.84 7.22 -2.39 -0.02 1.82 16 34 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.08 2.44 5.73 -2.39 -0.01 2.43 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.14 2.50 7.91 -2.39 -0.02 2.48 16 38 H 0.15 2.39 7.69 -2.39 -0.02 2.37 16 39 H 0.29 -0.75 8.06 -2.91 -0.02 -0.78 16 40 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.13 -0.19 8.14 -2.38 -0.02 -0.21 16 42 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.11 1.63 5.93 -2.39 -0.01 1.62 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.36 15.75 5.38 -92.71 -0.50 15.25 16 48 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -87.85 388.07 4.14 -83.70 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.42 Total: 24.62 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: 9.81 Total: 30.02 kcal Atomic # 7 Polarization: -136.25 SS G_CDS: -7.86 Total: -144.11 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -0.13 Total: -41.27 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.03 kcal Total: -87.85 4.14 -83.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037868375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.227 kcal (2) G-P(sol) polarization free energy of solvation -87.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds