Wall clock time and date at job start Tue Mar 31 2020 20:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 119.99735 * 2 1 4 4 O 1.21597 * 119.99622 * 185.39624 * 3 2 1 5 5 C 1.47522 * 120.00512 * 5.39170 * 3 2 1 6 6 C 1.36595 * 125.77276 * 186.01797 * 5 3 2 7 7 N 1.34814 * 106.84010 * 179.90181 * 6 5 3 8 8 C 1.46502 * 126.59474 * 180.13551 * 7 6 5 9 9 C 1.53000 * 109.47073 * 75.29240 * 8 7 6 10 10 C 1.53001 * 109.46881 * 195.29559 * 8 7 6 11 11 C 1.53001 * 109.46885 * 315.29295 * 8 7 6 12 12 N 1.40205 * 106.80777 * 0.35999 * 7 6 5 13 13 N 1.28762 * 108.37320 * 359.76905 * 12 7 6 14 14 C 1.46499 * 119.99608 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.88134 * 183.87983 * 14 2 1 16 16 C 1.54903 * 111.00810 * 307.80224 * 14 2 1 17 17 N 1.47736 * 104.84593 * 155.17074 * 16 14 2 18 18 C 1.36942 * 125.82487 * 155.82893 * 17 16 14 19 19 H 1.07993 * 119.99907 * 359.93127 * 18 17 16 20 20 C 1.38818 * 119.99855 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00207 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99795 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46711 * 120.00143 * 22 20 18 25 25 H 1.48496 * 109.47215 * 240.00204 * 22 20 18 26 26 C 1.47026 * 108.52591 * 335.75160 * 17 16 14 27 27 C 1.54316 * 107.40423 * 1.17989 * 26 17 16 28 28 H 1.09001 * 110.72381 * 263.57880 * 27 26 17 29 29 O 1.42896 * 110.72413 * 140.48067 * 27 26 17 30 30 H 1.09003 * 109.46702 * 275.37372 * 1 2 3 31 31 H 1.09001 * 109.47215 * 35.37016 * 1 2 3 32 32 H 1.08995 * 109.47498 * 155.37385 * 1 2 3 33 33 H 1.07996 * 126.57850 * 0.04945 * 6 5 3 34 34 H 1.09003 * 109.46960 * 60.00473 * 9 8 7 35 35 H 1.09002 * 109.46853 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.46932 * 299.99783 * 9 8 7 37 37 H 1.08992 * 109.47192 * 59.99583 * 10 8 7 38 38 H 1.08998 * 109.46603 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.46947 * 299.99737 * 10 8 7 40 40 H 1.08996 * 109.47254 * 60.00405 * 11 8 7 41 41 H 1.09002 * 109.46899 * 180.02562 * 11 8 7 42 42 H 1.09005 * 109.46984 * 300.00005 * 11 8 7 43 43 H 1.09000 * 110.36772 * 273.92974 * 16 14 2 44 44 H 1.08999 * 110.36966 * 36.13348 * 16 14 2 45 45 H 0.96990 * 120.00246 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.88202 * 241.68426 * 26 17 16 47 47 H 1.09002 * 109.87973 * 120.68038 * 26 17 16 48 48 H 0.96703 * 114.00087 * 61.44846 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3508 1.1695 -0.0990 5 6 1.4062 2.4420 0.1200 6 6 1.9526 3.6897 0.0175 7 7 0.9467 4.5715 0.1852 8 6 1.0518 6.0324 0.1546 9 6 1.2089 6.5022 -1.2930 10 6 -0.2136 6.6474 0.7560 11 6 2.2697 6.4733 0.9690 12 7 -0.2184 3.8216 0.3997 13 7 0.0892 2.5720 0.3546 14 6 2.1974 -1.2688 -0.0006 15 1 3.2717 -1.0973 0.0684 16 6 1.7075 -2.1933 1.1416 17 7 2.0289 -3.5613 0.6855 18 6 2.2211 -4.6508 1.4925 19 1 2.1419 -4.5493 2.5648 20 6 2.5188 -5.8856 0.9324 21 7 2.6168 -6.0090 -0.3744 22 14 2.7818 -7.3716 2.0332 23 1 2.6179 -6.9706 3.4537 24 1 1.7845 -8.4193 1.6970 25 1 4.1512 -7.9064 1.8242 26 6 2.1063 -3.5581 -0.7827 27 6 1.8483 -2.1120 -1.2554 28 1 0.8032 -1.9781 -1.5347 29 8 2.7081 -1.7755 -2.3460 30 1 -0.3633 0.0962 1.0232 31 1 -0.3634 0.8380 -0.5949 32 1 -0.3634 -0.9341 -0.4282 33 1 2.9907 3.9246 -0.1653 34 1 0.3412 6.1882 -1.8731 35 1 1.2866 7.5892 -1.3157 36 1 2.1104 6.0641 -1.7213 37 1 -0.3255 6.3127 1.7872 38 1 -0.1351 7.7343 0.7336 39 1 -1.0812 6.3333 0.1759 40 1 3.1712 6.0352 0.5406 41 1 2.3477 7.5603 0.9466 42 1 2.1578 6.1385 2.0003 43 1 2.2390 -1.9684 2.0662 44 1 0.6329 -2.0812 1.2859 45 1 2.8244 -6.8718 -0.7658 46 1 1.3481 -4.2238 -1.1953 47 1 3.0969 -3.8816 -1.1024 48 1 2.5829 -2.3271 -3.1303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047405839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:02 Heat of formation + Delta-G solvation = 57.395345 kcal Electronic energy + Delta-G solvation = -30036.929094 eV Core-core repulsion = 25937.945481 eV Total energy + Delta-G solvation = -4098.983613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.42196 -39.62730 -37.89281 -37.51720 -35.13383 -34.67745 -32.27916 -31.87032 -30.85400 -28.52296 -28.09203 -28.00090 -27.25102 -26.50415 -24.64027 -23.91194 -23.05106 -20.89433 -20.38271 -20.15463 -18.90613 -17.47624 -17.01689 -16.86750 -16.33389 -16.11483 -15.84685 -15.11164 -14.89554 -14.72879 -14.59894 -14.24240 -13.97334 -13.90663 -13.21999 -13.05688 -12.98761 -12.83115 -12.78651 -12.62854 -12.49862 -12.38627 -12.30264 -12.15398 -11.95693 -11.91358 -11.55182 -11.29794 -11.17486 -10.97867 -10.84060 -10.76724 -10.47425 -10.09689 -9.89440 -9.83443 -9.75494 -9.36041 -9.21397 -8.67358 -8.23670 -6.88185 -5.73280 -3.08099 1.02890 1.72745 1.76408 3.15524 3.40516 3.41540 3.46429 3.48797 3.79183 4.05862 4.11636 4.17975 4.46777 4.53100 4.75228 4.77053 4.84505 4.90339 5.00532 5.02232 5.05698 5.17313 5.21659 5.32643 5.39438 5.46970 5.47310 5.51616 5.53837 5.62695 5.72313 5.74974 5.91380 5.94930 6.12751 6.19086 6.20724 6.25712 6.56305 6.68654 6.96203 7.39902 7.51121 7.62642 7.77213 7.86938 8.19705 8.27161 8.37155 9.17451 9.77363 10.41364 11.38262 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.002357 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.492093 B =11875.538141 C =12125.803461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.585 5.585 3 C 0.601 3.399 4 O -0.538 6.538 5 C -0.092 4.092 6 C 0.091 3.909 7 N -0.352 5.352 8 C 0.170 3.830 9 C -0.161 4.161 10 C -0.148 4.148 11 C -0.163 4.163 12 N -0.070 5.070 13 N -0.202 5.202 14 C 0.135 3.865 15 H 0.115 0.885 16 C 0.131 3.869 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.152 3.848 27 C 0.065 3.935 28 H 0.057 0.943 29 O -0.560 6.560 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.200 0.800 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.029 0.971 45 H 0.253 0.747 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.816 27.452 -1.891 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.316 5.316 3 C 0.386 3.614 4 O -0.414 6.414 5 C -0.231 4.231 6 C -0.066 4.066 7 N -0.139 5.139 8 C 0.087 3.913 9 C -0.219 4.219 10 C -0.206 4.206 11 C -0.222 4.222 12 N -0.050 5.050 13 N -0.076 5.076 14 C 0.031 3.969 15 H 0.133 0.867 16 C 0.004 3.996 17 N -0.327 5.327 18 C -0.355 4.355 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.026 3.974 27 C 0.004 3.996 28 H 0.074 0.926 29 O -0.365 6.365 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.217 0.783 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.434 27.768 -1.262 28.322 hybrid contribution 0.889 -1.239 -0.107 1.528 sum -4.545 26.529 -1.369 26.950 Atomic orbital electron populations 1.21949 0.78702 1.02776 1.02582 1.47516 1.07465 1.05247 1.71338 1.16784 0.86025 0.81734 0.76825 1.90802 1.12956 1.86620 1.51009 1.21497 0.90786 0.94878 1.15931 1.23213 0.96398 0.88783 0.98163 1.50790 1.07040 1.07967 1.48090 1.21075 0.98879 0.73340 0.97989 1.22288 1.03586 1.02723 0.93331 1.21986 0.95557 1.00881 1.02149 1.22306 0.96054 1.03223 1.00584 1.81943 1.05138 0.96036 1.21839 1.74846 1.12450 1.09953 1.10310 1.22424 0.98373 0.81045 0.95042 0.86688 1.21833 0.97656 0.85369 0.94713 1.44315 1.83293 1.03266 1.01859 1.19120 1.41164 0.85737 0.89465 0.90075 1.24826 1.01776 0.97765 0.96077 1.69944 1.54985 1.23478 1.08612 0.85993 0.77438 0.82622 0.79397 1.20433 1.21740 1.21693 1.21852 1.01900 0.89165 0.84438 1.23572 0.92160 0.97221 0.86608 0.92555 1.86499 1.63362 1.61261 1.25366 0.92057 0.90183 0.91105 0.78342 0.91209 0.89689 0.91315 0.91215 0.90212 0.90614 0.91060 0.89444 0.91096 0.93313 0.95294 0.93709 0.93449 0.92153 0.78030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 7.85 59.85 0.47 1.70 16 2 N -0.59 -10.26 2.91 -172.71 -0.50 -10.76 16 3 C 0.60 10.55 7.66 -12.48 -0.10 10.45 16 4 O -0.54 -10.85 16.27 5.28 0.09 -10.77 16 5 C -0.09 -1.32 6.62 -83.55 -0.55 -1.87 16 6 C 0.09 1.00 10.43 -16.84 -0.18 0.83 16 7 N -0.35 -3.40 3.44 -48.35 -0.17 -3.57 16 8 C 0.17 0.99 1.25 -131.82 -0.16 0.82 16 9 C -0.16 -0.73 8.74 37.16 0.32 -0.40 16 10 C -0.15 -0.76 8.11 37.16 0.30 -0.46 16 11 C -0.16 -0.68 8.30 37.16 0.31 -0.37 16 12 N -0.07 -0.88 12.91 60.35 0.78 -0.10 16 13 N -0.20 -2.85 9.06 32.85 0.30 -2.56 16 14 C 0.14 2.74 3.16 -65.78 -0.21 2.53 16 15 H 0.12 2.63 7.04 -51.93 -0.37 2.27 16 16 C 0.13 2.84 6.81 -2.36 -0.02 2.82 16 17 N -0.60 -15.54 3.41 -169.82 -0.58 -16.11 16 18 C -0.23 -6.36 10.29 -15.05 -0.15 -6.52 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -27.05 10.31 55.49 0.57 -26.47 16 22 Si 0.92 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.15 3.72 5.14 -3.07 -0.02 3.71 16 27 C 0.06 1.31 3.87 -24.90 -0.10 1.21 16 28 H 0.06 1.05 6.47 -51.93 -0.34 0.71 16 29 O -0.56 -10.90 13.39 -35.23 -0.47 -11.37 16 30 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.08 1.13 5.92 -51.93 -0.31 0.82 16 32 H 0.07 1.03 6.38 -51.93 -0.33 0.70 16 33 H 0.20 1.68 7.62 -52.49 -0.40 1.28 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 40 H 0.07 0.28 7.43 -51.93 -0.39 -0.10 16 41 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.60 6.96 -51.93 -0.36 0.24 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 47 H 0.06 1.66 7.28 -51.93 -0.38 1.28 16 48 H 0.37 5.67 9.11 45.56 0.42 6.09 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -35.14 385.47 -5.98 -41.12 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.61 Total: 3.47 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: -0.17 Total: 14.12 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.40 Total: -59.57 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.39 Total: -22.14 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.14 -5.98 -41.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047405839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.515 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds