Wall clock time and date at job start Tue Mar 31 2020 20:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99541 * 2 1 4 4 H 1.09001 * 109.47046 * 16.42902 * 3 2 1 5 5 C 1.50704 * 109.46674 * 136.42659 * 3 2 1 6 6 O 1.21279 * 120.00218 * 4.99521 * 5 3 2 7 7 N 1.34781 * 119.99778 * 184.73005 * 5 3 2 8 8 C 1.47429 * 125.64731 * 359.95855 * 7 5 3 9 9 C 1.55127 * 104.71891 * 155.82131 * 8 7 5 10 10 H 1.09003 * 110.90786 * 155.27533 * 9 8 7 11 11 N 1.46494 * 111.23035 * 279.17927 * 9 8 7 12 12 C 1.36938 * 119.99904 * 267.21094 * 11 9 8 13 13 H 1.08000 * 120.00160 * 359.97438 * 12 11 9 14 14 C 1.38814 * 120.00161 * 179.97438 * 12 11 9 15 15 N 1.31622 * 119.99541 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00153 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47130 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46913 * 120.00537 * 16 14 12 19 19 H 1.48497 * 109.47127 * 240.00124 * 16 14 12 20 20 C 1.55160 * 101.48751 * 37.29837 * 9 8 7 21 21 H 1.08996 * 110.71877 * 82.69196 * 20 9 8 22 22 N 1.46496 * 110.87453 * 205.89556 * 20 9 8 23 23 C 1.35316 * 125.86582 * 80.06423 * 22 20 9 24 24 C 1.35352 * 106.17169 * 180.02562 * 23 22 20 25 25 N 1.33775 * 106.49949 * 359.97438 * 24 23 22 26 26 N 1.28634 * 108.88313 * 359.73773 * 25 24 23 27 27 C 1.47020 * 125.64694 * 180.27770 * 7 5 3 28 28 C 1.52994 * 109.47338 * 256.42391 * 3 2 1 29 29 C 1.52994 * 109.47216 * 304.38906 * 28 3 2 30 30 C 1.52999 * 109.47223 * 64.39009 * 28 3 2 31 31 H 1.09001 * 109.46774 * 295.21707 * 1 2 3 32 32 H 1.08997 * 109.47454 * 55.22678 * 1 2 3 33 33 H 1.09005 * 109.46744 * 175.22316 * 1 2 3 34 34 H 1.09000 * 110.36782 * 274.75215 * 8 7 5 35 35 H 1.08997 * 110.36354 * 37.07647 * 8 7 5 36 36 H 0.97000 * 120.00203 * 87.20095 * 11 9 8 37 37 H 0.97000 * 119.99594 * 179.97438 * 15 14 12 38 38 H 1.07998 * 126.91236 * 359.97438 * 23 22 20 39 39 H 1.08004 * 126.75086 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.87796 * 300.43048 * 27 7 5 41 41 H 1.08997 * 109.88526 * 61.44379 * 27 7 5 42 42 H 1.08997 * 109.47137 * 184.38737 * 28 3 2 43 43 H 1.08997 * 109.47206 * 59.99873 * 29 28 3 44 44 H 1.09003 * 109.47366 * 179.97438 * 29 28 3 45 45 H 1.09006 * 109.47528 * 299.99770 * 29 28 3 46 46 H 1.09002 * 109.47676 * 176.83445 * 30 28 3 47 47 H 1.08997 * 109.47094 * 296.83300 * 30 28 3 48 48 H 1.09001 * 109.47075 * 56.83310 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2574 2.0383 0.2907 5 6 3.1549 1.3457 0.9794 6 8 3.5027 0.3323 1.5476 7 7 3.7955 2.5069 1.2198 8 6 3.4825 3.8059 0.5969 9 6 4.0137 4.8626 1.6006 10 1 4.2385 5.8015 1.0945 11 7 3.0669 5.0747 2.6982 12 6 2.1306 6.0702 2.6120 13 1 2.0904 6.6993 1.7350 14 6 1.2330 6.2709 3.6518 15 7 1.2818 5.5039 4.7203 16 14 -0.0438 7.6294 3.5344 17 1 0.1102 8.3431 2.2413 18 1 -1.4038 7.0385 3.6144 19 1 0.1469 8.5859 4.6541 20 6 5.3112 4.1807 2.1095 21 1 6.1344 4.3520 1.4158 22 7 5.6590 4.6556 3.4510 23 6 5.1068 4.2298 4.6106 24 6 5.7169 4.9274 5.5971 25 7 6.6011 5.7348 5.0006 26 7 6.5464 5.5454 3.7295 27 6 4.9265 2.6865 2.1419 28 6 2.5269 1.6338 -1.4021 29 6 3.5021 0.5450 -1.8541 30 6 1.3496 1.7005 -2.3769 31 1 -0.3633 0.4378 0.9298 32 1 -0.3634 0.5861 -0.8441 33 1 -0.3633 -1.0242 -0.0856 34 1 3.9927 3.8997 -0.3618 35 1 2.4058 3.9145 0.4667 36 1 3.1031 4.5099 3.4860 37 1 0.6548 5.6444 5.4470 38 1 4.3342 3.4841 4.7257 39 1 5.5277 4.8473 6.6574 40 1 4.6304 2.4018 3.1515 41 1 5.7699 2.0771 1.8173 42 1 3.0390 2.5958 -1.3846 43 1 2.9900 -0.4170 -1.8716 44 1 3.8700 0.7786 -2.8533 45 1 4.3410 0.4975 -1.1597 46 1 1.7108 1.9895 -3.3639 47 1 0.8717 0.7228 -2.4369 48 1 0.6273 2.4369 -2.0245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070267838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:49 Heat of formation + Delta-G solvation = 26.285124 kcal Electronic energy + Delta-G solvation = -31484.640765 eV Core-core repulsion = 27384.308112 eV Total energy + Delta-G solvation = -4100.332653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.17714 -41.59353 -39.72186 -38.42409 -35.95405 -35.59150 -34.93329 -32.95009 -31.98217 -31.02938 -29.48661 -29.00651 -28.02141 -26.83424 -25.90332 -25.03610 -23.52845 -23.04999 -21.54338 -21.48382 -20.66691 -19.37391 -18.86217 -17.97578 -17.86183 -17.27033 -17.01548 -16.60587 -16.53127 -16.32952 -16.02618 -15.47856 -15.32955 -15.10705 -14.84108 -14.70472 -14.63633 -14.21085 -13.96475 -13.71773 -13.49393 -13.31694 -13.17549 -12.95866 -12.91901 -12.77748 -12.70546 -12.51706 -12.44267 -12.25451 -12.10461 -12.00918 -11.90784 -11.84211 -11.58869 -11.23586 -11.06276 -10.86296 -10.39116 -10.20830 -9.82283 -9.07451 -7.98463 -5.28082 0.71599 1.22156 1.45234 1.48609 1.49536 1.55509 1.69227 1.83899 2.51408 2.85745 3.02679 3.25716 3.44031 3.56964 3.62069 3.65825 3.70412 3.86078 3.87194 4.04791 4.17849 4.21090 4.31879 4.38926 4.44586 4.48473 4.49906 4.52598 4.59476 4.66159 4.78936 4.79720 4.83634 4.85026 4.90270 4.96419 5.02003 5.14014 5.17455 5.29456 5.39179 5.44424 5.51725 5.72955 6.02186 6.20948 6.36390 7.04716 7.30397 7.57316 7.96387 8.19278 9.23544 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009536 B = 0.004774 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.407365 B = 5864.190207 C = 7641.458595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.379 6.379 3 C 0.084 3.916 4 H 0.092 0.908 5 C 0.526 3.474 6 O -0.572 6.572 7 N -0.600 5.600 8 C 0.078 3.922 9 C 0.151 3.849 10 H 0.101 0.899 11 N -0.719 5.719 12 C -0.241 4.241 13 H 0.085 0.915 14 C -0.061 4.061 15 N -0.957 5.957 16 Si 0.961 3.039 17 H -0.262 1.262 18 H -0.296 1.296 19 H -0.305 1.305 20 C 0.120 3.880 21 H 0.165 0.835 22 N -0.261 5.261 23 C -0.023 4.023 24 C -0.060 4.060 25 N -0.304 5.304 26 N -0.106 5.106 27 C 0.109 3.891 28 C -0.105 4.105 29 C -0.136 4.136 30 C -0.145 4.145 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.377 0.623 37 H 0.249 0.751 38 H 0.185 0.815 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 -7.647 -15.039 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.296 6.296 3 C 0.022 3.978 4 H 0.109 0.891 5 C 0.316 3.684 6 O -0.451 6.451 7 N -0.335 5.335 8 C -0.047 4.047 9 C 0.039 3.961 10 H 0.119 0.881 11 N -0.359 5.359 12 C -0.372 4.372 13 H 0.103 0.897 14 C -0.255 4.255 15 N -0.606 5.606 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.223 1.223 19 H -0.233 1.233 20 C 0.016 3.984 21 H 0.183 0.817 22 N -0.054 5.054 23 C -0.174 4.174 24 C -0.217 4.217 25 N -0.170 5.170 26 N -0.085 5.085 27 C -0.015 4.015 28 C -0.124 4.124 29 C -0.194 4.194 30 C -0.202 4.202 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.211 0.789 37 H 0.058 0.942 38 H 0.202 0.798 39 H 0.222 0.778 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.097 0.903 47 H 0.077 0.923 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.323 -7.293 -15.397 17.358 hybrid contribution -2.073 -0.123 1.605 2.625 sum 1.250 -7.415 -13.792 15.709 Atomic orbital electron populations 1.23164 0.79317 1.04344 1.00810 1.87952 1.21233 1.25657 1.94802 1.22043 0.93631 0.87000 0.95086 0.89052 1.20781 0.83646 0.81425 0.82579 1.90672 1.67169 1.34590 1.52642 1.48165 1.33040 1.08942 1.43348 1.23588 1.02999 0.80752 0.97405 1.22082 0.86813 0.97419 0.89796 0.88108 1.42465 1.36207 1.38586 1.18683 1.19575 1.07353 1.08353 1.01966 0.89675 1.25410 1.01981 1.01385 0.96697 1.69777 1.40204 1.42282 1.08351 0.85258 0.79010 0.79109 0.77431 1.18635 1.22347 1.23258 1.23311 1.01529 0.93882 0.79675 0.81715 1.47080 1.24401 1.25762 1.08182 1.23508 1.03010 1.05461 0.85451 1.23828 0.98047 0.97563 1.02312 1.74940 1.21591 1.21467 0.98953 1.78064 1.11045 1.08587 1.10798 1.22024 0.90653 0.93645 0.95205 1.21622 0.98393 1.00792 0.91558 1.21672 0.97856 0.98587 1.01247 1.21868 0.96889 1.02267 0.99185 0.94774 0.91402 0.87876 0.86540 0.89781 0.78891 0.94171 0.79788 0.77824 0.92182 0.88281 0.88098 0.92924 0.90408 0.94779 0.90317 0.92288 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.34 113.37 1.17 1.57 16 2 O -0.38 -10.39 8.74 -129.99 -1.14 -11.53 16 3 C 0.08 2.12 1.72 29.85 0.05 2.17 16 4 H 0.09 2.28 7.16 -2.39 -0.02 2.26 16 5 C 0.53 16.48 6.19 87.66 0.54 17.02 16 6 O -0.57 -22.68 16.83 15.96 0.27 -22.41 16 7 N -0.60 -16.19 3.32 -811.34 -2.70 -18.89 16 8 C 0.08 1.79 5.06 86.93 0.44 2.23 16 9 C 0.15 4.44 3.58 46.46 0.17 4.61 16 10 H 0.10 2.81 8.09 -2.39 -0.02 2.79 16 11 N -0.72 -29.82 4.73 -316.02 -1.49 -31.31 16 12 C -0.24 -11.51 9.96 84.03 0.84 -10.67 16 13 H 0.09 3.82 7.83 -2.91 -0.02 3.80 16 14 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 15 N -0.96 -53.67 13.06 21.65 0.28 -53.39 16 16 Si 0.96 42.94 29.55 68.60 2.03 44.97 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 20 C 0.12 3.11 3.84 46.18 0.18 3.29 16 21 H 0.17 3.12 8.14 -2.39 -0.02 3.10 16 22 N -0.26 -8.67 3.14 -321.54 -1.01 -9.68 16 23 C -0.02 -0.80 8.50 83.49 0.71 -0.09 16 24 C -0.06 -2.16 12.05 83.73 1.01 -1.15 16 25 N -0.30 -11.97 12.41 -58.25 -0.72 -12.70 16 26 N -0.11 -3.97 13.16 37.02 0.49 -3.48 16 27 C 0.11 2.89 6.47 86.73 0.56 3.45 16 28 C -0.10 -1.90 2.66 -10.80 -0.03 -1.93 16 29 C -0.14 -2.64 8.81 71.98 0.63 -2.00 16 30 C -0.15 -2.04 8.13 71.98 0.59 -1.45 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.06 6.31 -2.39 -0.02 1.05 16 33 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.12 1.70 7.10 -2.39 -0.02 1.69 16 35 H 0.08 2.14 7.34 -2.39 -0.02 2.12 16 36 H 0.38 17.19 5.30 -92.71 -0.49 16.70 16 37 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 38 H 0.19 6.38 6.49 -2.91 -0.02 6.36 16 39 H 0.20 6.06 8.06 -2.91 -0.02 6.03 16 40 H 0.06 1.86 6.02 -2.38 -0.01 1.85 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.10 1.54 5.44 -2.39 -0.01 1.53 16 43 H 0.05 1.15 7.57 -2.39 -0.02 1.13 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.03 0.78 7.36 -2.38 -0.02 0.76 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.87 6.76 -2.39 -0.02 0.85 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -71.60 381.22 3.82 -67.77 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.49 Total: 36.32 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 7.33 Total: 14.32 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -5.15 Total: -129.44 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.87 Total: -33.94 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.60 3.82 -67.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070267838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.057 kcal (2) G-P(sol) polarization free energy of solvation -71.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds