Wall clock time and date at job start Tue Mar 31 2020 20:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47039 * 2 1 4 4 N 1.46501 * 109.47204 * 240.00272 * 2 1 3 5 5 C 1.34814 * 126.59599 * 84.70907 * 4 2 1 6 6 C 1.36588 * 106.83926 * 179.90450 * 5 4 2 7 7 C 1.47528 * 125.77000 * 180.16558 * 6 5 4 8 8 O 1.21585 * 120.00256 * 0.25694 * 7 6 5 9 9 N 1.34781 * 119.99669 * 180.25211 * 7 6 5 10 10 C 1.46500 * 119.99567 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46772 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47102 * 304.99834 * 11 10 9 13 13 C 1.54805 * 109.46864 * 185.00757 * 11 10 9 14 14 N 1.45120 * 109.54225 * 172.10984 * 13 11 10 15 15 C 1.36940 * 118.75584 * 269.29313 * 14 13 11 16 16 H 1.08006 * 119.99861 * 139.40307 * 15 14 13 17 17 C 1.38807 * 120.00064 * 319.39806 * 15 14 13 18 18 N 1.31624 * 119.99779 * 156.47571 * 17 15 14 19 19 Si 1.86798 * 120.00298 * 336.48108 * 17 15 14 20 20 H 1.48496 * 109.47475 * 95.51745 * 19 17 15 21 21 H 1.48502 * 109.47407 * 215.52261 * 19 17 15 22 22 H 1.48501 * 109.46723 * 335.52026 * 19 17 15 23 23 C 1.47509 * 122.48790 * 89.28552 * 14 13 11 24 24 C 1.53570 * 111.02551 * 318.38176 * 23 14 13 25 25 C 1.51540 * 109.58296 * 320.01600 * 24 23 14 26 26 O 1.38016 * 109.47140 * 64.99955 * 11 10 9 27 27 N 1.34402 * 108.45961 * 0.36704 * 6 5 4 28 28 N 1.28763 * 109.52309 * 359.76892 * 27 6 5 29 29 H 1.09000 * 109.47208 * 59.99677 * 1 2 3 30 30 H 1.08998 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47542 * 300.00234 * 1 2 3 32 32 H 1.09001 * 109.47479 * 119.99592 * 2 1 3 33 33 H 1.09000 * 109.47384 * 300.00215 * 3 2 1 34 34 H 1.09002 * 109.46823 * 59.99898 * 3 2 1 35 35 H 1.08998 * 109.47385 * 180.02562 * 3 2 1 36 36 H 1.08003 * 126.57971 * 0.02562 * 5 4 2 37 37 H 0.96996 * 120.00456 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.47463 * 299.99785 * 10 9 7 39 39 H 1.08996 * 109.47447 * 60.00546 * 10 9 7 40 40 H 1.09006 * 109.46363 * 292.12993 * 13 11 10 41 41 H 1.09008 * 109.46218 * 52.08856 * 13 11 10 42 42 H 0.97006 * 119.99287 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.16691 * 197.97802 * 23 14 13 44 44 H 1.09003 * 109.11920 * 78.74811 * 23 14 13 45 45 H 1.09007 * 109.45503 * 199.98824 * 24 23 14 46 46 H 1.09002 * 109.45495 * 80.04881 * 24 23 14 47 47 H 1.09002 * 109.59013 * 331.62078 * 25 24 23 48 48 H 1.08997 * 109.59237 * 211.18568 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1921 -0.1526 -2.4201 6 6 2.6628 -1.1491 -3.2270 7 6 2.9997 -1.0140 -4.6570 8 8 2.8689 0.0589 -5.2137 9 7 3.4525 -2.0801 -5.3462 10 6 3.7875 -1.9459 -6.7661 11 6 4.2726 -3.2931 -7.3051 12 1 5.1017 -3.6513 -6.6950 13 6 4.7456 -3.1229 -8.7693 14 7 5.3767 -4.3490 -9.2212 15 6 6.7273 -4.4967 -9.0499 16 1 7.1311 -5.4484 -8.7374 17 6 7.5773 -3.4232 -9.2780 18 7 8.7595 -3.3857 -8.7005 19 14 7.0434 -2.0319 -10.4042 20 1 6.4660 -0.9311 -9.5917 21 1 8.2187 -1.5266 -11.1582 22 1 6.0209 -2.5319 -11.3581 23 6 4.6184 -5.4424 -9.8580 24 6 3.2807 -5.6757 -9.1408 25 6 3.4792 -5.5537 -7.6434 26 8 3.2389 -4.2064 -7.2586 27 7 2.7631 -2.2745 -2.4992 28 7 2.3891 -2.0395 -1.2897 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.9984 0.8704 -2.7069 37 1 3.5565 -2.9362 -4.9022 38 1 2.9031 -1.6306 -7.3198 39 1 4.5750 -1.2018 -6.8848 40 1 3.8880 -2.9005 -9.4045 41 1 5.4619 -2.3032 -8.8266 42 1 9.3533 -2.6353 -8.8597 43 1 5.2095 -6.3573 -9.8198 44 1 4.4259 -5.1840 -10.8993 45 1 2.9109 -6.6734 -9.3777 46 1 2.5562 -4.9320 -9.4727 47 1 4.5018 -5.8302 -7.3865 48 1 2.7799 -6.2114 -7.1272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073840821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:46 Heat of formation + Delta-G solvation = 40.926894 kcal Electronic energy + Delta-G solvation = -29672.209154 eV Core-core repulsion = 25572.511416 eV Total energy + Delta-G solvation = -4099.697738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.39711 -39.50555 -38.70085 -36.84965 -35.31801 -34.63562 -32.59803 -31.80365 -31.53983 -30.91924 -28.75660 -28.01172 -26.14515 -25.45503 -24.25838 -23.45079 -22.42488 -21.13160 -21.00578 -20.37476 -19.62963 -18.24865 -16.97046 -16.49631 -16.32458 -16.18820 -15.89500 -15.68288 -15.25430 -14.82925 -14.71135 -14.56362 -14.50575 -13.79156 -13.76913 -13.42812 -13.20461 -13.16238 -12.95921 -12.61478 -12.42826 -12.40361 -12.29737 -12.13978 -11.97453 -11.81543 -11.55831 -11.36572 -11.11850 -10.76003 -10.58905 -10.48015 -10.38281 -10.06237 -9.99777 -9.71462 -9.67036 -9.44920 -8.90881 -8.79714 -8.50469 -6.81611 -6.05634 -3.49520 0.97471 1.66642 1.74847 3.27300 3.30953 3.37339 3.45763 3.52121 3.83956 4.07244 4.15120 4.16820 4.34887 4.48875 4.57862 4.75024 4.82142 4.88714 4.90724 5.00218 5.02321 5.21156 5.26231 5.42192 5.46784 5.47235 5.53251 5.62854 5.68502 5.74389 5.91885 6.02787 6.04614 6.11358 6.16182 6.22595 6.40286 6.42078 6.53406 6.59934 6.70274 6.79214 6.82467 7.60126 7.88806 8.03483 8.17757 8.32178 8.36702 8.97139 9.66212 10.04740 11.09282 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.002611 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.768646 B =10720.750817 C =11518.961385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.170 4.170 4 N -0.358 5.358 5 C 0.092 3.908 6 C -0.096 4.096 7 C 0.600 3.400 8 O -0.547 6.547 9 N -0.700 5.700 10 C 0.131 3.869 11 C 0.071 3.929 12 H 0.065 0.935 13 C 0.119 3.881 14 N -0.604 5.604 15 C -0.281 4.281 16 H 0.077 0.923 17 C 0.042 3.958 18 N -0.893 5.893 19 Si 0.872 3.128 20 H -0.282 1.282 21 H -0.299 1.299 22 H -0.269 1.269 23 C 0.144 3.856 24 C -0.168 4.168 25 C 0.086 3.914 26 O -0.393 6.393 27 N -0.202 5.202 28 N -0.067 5.067 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.201 0.799 37 H 0.411 0.589 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.264 0.736 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.047 7.007 16.535 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.228 4.228 4 N -0.144 5.144 5 C -0.065 4.065 6 C -0.235 4.235 7 C 0.384 3.616 8 O -0.424 6.424 9 N -0.350 5.350 10 C 0.007 3.993 11 C 0.009 3.991 12 H 0.083 0.917 13 C -0.009 4.009 14 N -0.326 5.326 15 C -0.410 4.410 16 H 0.094 0.906 17 C -0.160 4.160 18 N -0.533 5.533 19 Si 0.701 3.299 20 H -0.210 1.210 21 H -0.227 1.227 22 H -0.194 1.194 23 C 0.019 3.981 24 C -0.207 4.207 25 C 0.010 3.990 26 O -0.313 6.313 27 N -0.076 5.076 28 N -0.047 5.047 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.218 0.782 37 H 0.247 0.753 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.987 6.553 16.939 24.868 hybrid contribution 0.066 1.326 -0.973 1.646 sum -16.921 7.879 15.967 24.562 Atomic orbital electron populations 1.22262 0.92511 1.03889 1.03822 1.21630 0.95649 0.93434 0.85055 1.22274 1.02802 0.93311 1.04381 1.50753 1.44713 1.09862 1.09045 1.23239 0.97621 1.01107 0.84529 1.21530 1.14104 0.90643 0.97269 1.16757 0.77323 0.84279 0.83236 1.90793 1.55067 1.27024 1.69510 1.45759 1.64965 1.12834 1.11437 1.21509 1.01196 0.97017 0.79568 1.22515 0.89594 0.87550 0.99442 0.91715 1.21834 0.96391 0.90529 0.92105 1.44013 1.05159 1.15645 1.67812 1.18794 0.80331 0.99765 1.42104 0.90565 1.25532 0.94932 0.98200 0.97325 1.69895 1.10135 1.31779 1.41511 0.86996 0.77615 0.82495 0.82759 1.20974 1.22681 1.19352 1.21259 0.90955 0.91999 0.93853 1.22567 0.99485 1.01265 0.97334 1.22001 1.01298 0.81932 0.93778 1.86091 1.38436 1.19323 1.87416 1.74663 1.10920 1.23271 0.98697 1.81991 1.18468 0.91714 1.12515 0.91418 0.91184 0.89704 0.86790 0.91006 0.89297 0.91009 0.78178 0.75287 0.90755 0.89836 0.93585 0.91999 0.92588 0.92280 0.96159 0.91587 0.91685 0.91860 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 9.52 37.16 0.35 -0.32 16 2 C 0.14 0.74 3.96 -67.93 -0.27 0.47 16 3 C -0.17 -0.56 8.85 37.16 0.33 -0.23 16 4 N -0.36 -3.38 3.54 -54.56 -0.19 -3.57 16 5 C 0.09 0.96 10.40 -16.84 -0.18 0.78 16 6 C -0.10 -1.34 6.99 -83.55 -0.58 -1.92 16 7 C 0.60 9.70 7.82 -12.47 -0.10 9.60 16 8 O -0.55 -9.92 16.86 5.29 0.09 -9.83 16 9 N -0.70 -11.40 5.49 -61.35 -0.34 -11.74 16 10 C 0.13 2.29 5.34 -4.04 -0.02 2.27 16 11 C 0.07 1.35 2.68 -25.78 -0.07 1.28 16 12 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 13 C 0.12 2.58 3.93 -3.83 -0.02 2.56 16 14 N -0.60 -14.00 1.75 -172.02 -0.30 -14.30 16 15 C -0.28 -7.65 9.69 -15.06 -0.15 -7.80 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 17 C 0.04 1.18 5.22 -17.43 -0.09 1.09 16 18 N -0.89 -26.78 13.97 55.49 0.78 -26.00 16 19 Si 0.87 21.99 25.27 -169.99 -4.29 17.69 16 20 H -0.28 -6.89 6.70 56.52 0.38 -6.51 16 21 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.14 2.83 6.30 -3.19 -0.02 2.81 16 24 C -0.17 -2.71 5.78 -27.17 -0.16 -2.86 16 25 C 0.09 1.44 6.37 36.42 0.23 1.67 16 26 O -0.39 -7.10 9.38 -26.54 -0.25 -7.35 16 27 N -0.20 -2.95 12.04 32.85 0.40 -2.55 16 28 N -0.07 -0.87 13.78 60.35 0.83 -0.04 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.22 7.23 -51.93 -0.38 -0.15 16 34 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.20 1.50 7.35 -52.48 -0.39 1.12 16 37 H 0.41 6.46 8.14 -40.82 -0.33 6.13 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 41 H 0.06 1.46 3.65 -51.92 -0.19 1.27 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.07 8.01 -51.93 -0.42 0.65 16 47 H 0.06 1.18 7.40 -51.93 -0.38 0.80 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -33.54 387.71 -5.74 -39.28 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.57 Total: 3.17 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.73 Total: 9.40 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 1.17 Total: -58.20 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.16 Total: -17.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.29 Total: 17.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.54 -5.74 -39.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073840821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.208 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds