Wall clock time and date at job start Tue Mar 31 2020 20:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46790 * 2 1 4 4 C 1.53003 * 109.47048 * 119.99393 * 2 1 3 5 5 C 1.52999 * 109.46824 * 65.00208 * 4 2 1 6 6 N 1.46506 * 109.46805 * 179.97438 * 5 4 2 7 7 C 1.34814 * 126.58877 * 125.00002 * 6 5 4 8 8 C 1.36595 * 106.83464 * 179.97438 * 7 6 5 9 9 C 1.47526 * 125.76875 * 179.97438 * 8 7 6 10 10 O 1.21594 * 120.00014 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99718 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99842 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.88465 * 37.42204 * 12 11 9 14 14 C 1.54911 * 111.00185 * 273.54633 * 12 11 9 15 15 N 1.47429 * 104.83029 * 204.87822 * 14 12 11 16 16 C 1.36933 * 125.64488 * 204.09243 * 15 14 12 17 17 H 1.07992 * 120.00550 * 9.69564 * 16 15 14 18 18 C 1.38817 * 119.99719 * 189.69235 * 16 15 14 19 19 N 1.31620 * 120.00119 * 209.16582 * 18 16 15 20 20 Si 1.86802 * 119.99832 * 29.16967 * 18 16 15 21 21 H 1.48503 * 109.46877 * 275.35104 * 20 18 16 22 22 H 1.48501 * 109.47185 * 155.35304 * 20 18 16 23 23 H 1.48496 * 109.47348 * 35.35086 * 20 18 16 24 24 C 1.47021 * 108.70372 * 24.35416 * 15 14 12 25 25 C 1.54332 * 107.26555 * 358.58677 * 24 15 14 26 26 H 1.09003 * 110.51893 * 96.44990 * 25 24 15 27 27 O 1.42898 * 111.00436 * 219.59720 * 25 24 15 28 28 N 1.34403 * 108.46166 * 0.24220 * 8 7 6 29 29 N 1.28760 * 109.51783 * 359.58750 * 28 8 7 30 30 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47117 * 300.00710 * 1 2 3 32 32 H 1.09004 * 109.47125 * 60.00317 * 1 2 3 33 33 H 1.08997 * 109.47406 * 239.99981 * 2 1 3 34 34 H 1.09001 * 109.46944 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46554 * 299.99151 * 3 2 1 36 36 H 1.08995 * 109.47547 * 59.99470 * 3 2 1 37 37 H 1.08996 * 109.47115 * 305.00201 * 4 2 1 38 38 H 1.09002 * 109.46985 * 185.00104 * 4 2 1 39 39 H 1.08996 * 109.47280 * 60.00094 * 5 4 2 40 40 H 1.09002 * 109.47255 * 299.99730 * 5 4 2 41 41 H 1.07998 * 126.58297 * 359.94590 * 7 6 5 42 42 H 0.97001 * 120.00259 * 359.97438 * 11 9 8 43 43 H 1.08996 * 110.36894 * 86.03789 * 14 12 11 44 44 H 1.08997 * 110.45834 * 323.76350 * 14 12 11 45 45 H 0.96999 * 119.99811 * 4.90321 * 19 18 16 46 46 H 1.09004 * 109.88168 * 118.12755 * 24 15 14 47 47 H 1.08999 * 109.88416 * 239.29853 * 24 15 14 48 48 H 0.96699 * 114.00220 * 293.78383 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1953 1.1881 6 7 2.1241 -2.8860 2.3841 7 6 1.3873 -3.6053 3.2543 8 6 2.2450 -4.0666 4.2121 9 6 1.8754 -4.9023 5.3703 10 8 0.7181 -5.2378 5.5333 11 7 2.8205 -5.2931 6.2482 12 6 2.4536 -6.1235 7.3980 13 1 1.6857 -6.8475 7.1253 14 6 1.9931 -5.2484 8.5905 15 7 2.2466 -6.0746 9.7849 16 6 1.6074 -5.9528 10.9898 17 1 0.7422 -5.3128 11.0799 18 6 2.0717 -6.6519 12.0955 19 7 1.2335 -7.0190 13.0416 20 14 3.8861 -7.0718 12.2408 21 1 4.1645 -8.3275 11.4985 22 1 4.2390 -7.2539 13.6717 23 1 4.6971 -5.9678 11.6676 24 6 3.3037 -7.0467 9.4701 25 6 3.6990 -6.8314 7.9939 26 1 4.5777 -6.1902 7.9232 27 8 3.9326 -8.0798 7.3389 28 7 3.4815 -3.6255 3.9243 29 7 3.4481 -2.9264 2.8435 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9565 0.8899 37 1 1.6054 -0.2616 2.1370 38 1 3.1263 -0.6442 1.2952 39 1 2.0699 -2.6549 0.3005 40 1 0.5489 -2.2723 1.1422 41 1 0.3231 -3.7824 3.2040 42 1 3.7436 -5.0251 6.1183 43 1 0.9307 -5.0202 8.5056 44 1 2.5756 -4.3282 8.6351 45 1 0.2820 -6.8642 12.9334 46 1 4.1661 -6.8784 10.1151 47 1 2.9277 -8.0605 9.6072 48 1 4.7004 -8.5624 7.6745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077665894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:53 Heat of formation + Delta-G solvation = 33.010147 kcal Electronic energy + Delta-G solvation = -28771.988259 eV Core-core repulsion = 24671.947225 eV Total energy + Delta-G solvation = -4100.041034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.42808 -39.62059 -38.07682 -37.73448 -35.32017 -34.69087 -34.08666 -32.02201 -31.27630 -29.96809 -28.56225 -27.78986 -27.65448 -25.10204 -24.41323 -23.17832 -22.13652 -21.00582 -20.79780 -20.50720 -20.12208 -18.35543 -17.49890 -17.09543 -16.55161 -16.40196 -16.19152 -15.87349 -15.14850 -15.01518 -14.72281 -14.58893 -14.33528 -14.19422 -13.77865 -13.72960 -13.48209 -12.93484 -12.85064 -12.78470 -12.63689 -12.49924 -12.44502 -12.11258 -11.83505 -11.65296 -11.63132 -11.57079 -11.30068 -11.18558 -11.12697 -10.60925 -10.59301 -10.44231 -10.15135 -9.86307 -9.50512 -9.47512 -9.21149 -8.92916 -8.43197 -7.11339 -6.36589 -3.18145 0.90671 1.58858 1.71135 3.13825 3.30911 3.40752 3.51445 3.69232 3.79889 4.00090 4.09444 4.23043 4.31012 4.35311 4.52380 4.59183 4.62615 4.63357 4.75829 4.85776 4.96450 5.01147 5.07854 5.16600 5.20259 5.25479 5.29600 5.32156 5.36538 5.38266 5.46535 5.55233 5.61449 5.70140 5.73724 5.86789 5.88184 6.06879 6.27185 6.40692 6.54314 6.62427 6.76547 7.50759 7.66488 7.79223 7.82779 8.25924 8.33935 9.01463 9.56115 10.21237 11.12578 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.002026 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.464705 B =13814.815590 C =14187.869000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.130 4.130 5 C 0.120 3.880 6 N -0.361 5.361 7 C 0.093 3.907 8 C -0.096 4.096 9 C 0.605 3.395 10 O -0.535 6.535 11 N -0.699 5.699 12 C 0.142 3.858 13 H 0.109 0.891 14 C 0.128 3.872 15 N -0.602 5.602 16 C -0.332 4.332 17 H 0.081 0.919 18 C -0.013 4.013 19 N -0.910 5.910 20 Si 1.052 2.948 21 H -0.293 1.293 22 H -0.297 1.297 23 H -0.293 1.293 24 C 0.093 3.907 25 C 0.086 3.914 26 H 0.069 0.931 27 O -0.558 6.558 28 N -0.205 5.205 29 N -0.065 5.065 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.205 0.795 42 H 0.406 0.594 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.265 0.735 46 H 0.032 0.968 47 H 0.055 0.945 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 12.327 -29.580 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.146 5.146 7 C -0.064 4.064 8 C -0.235 4.235 9 C 0.388 3.612 10 O -0.410 6.410 11 N -0.349 5.349 12 C 0.037 3.963 13 H 0.127 0.873 14 C 0.001 3.999 15 N -0.330 5.330 16 C -0.459 4.459 17 H 0.099 0.901 18 C -0.215 4.215 19 N -0.549 5.549 20 Si 0.885 3.115 21 H -0.221 1.221 22 H -0.225 1.225 23 H -0.221 1.221 24 C -0.033 4.033 25 C 0.026 3.974 26 H 0.087 0.913 27 O -0.362 6.362 28 N -0.079 5.079 29 N -0.045 5.045 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.221 0.779 42 H 0.241 0.759 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.749 12.063 -28.981 31.614 hybrid contribution -1.137 0.503 -0.682 1.418 sum 2.612 12.566 -29.663 32.321 Atomic orbital electron populations 1.21972 0.94887 1.01926 1.02464 1.21068 0.96070 0.96754 0.97328 1.21827 1.01287 0.95304 1.02134 1.21987 1.03159 0.92204 0.99450 1.22203 1.00712 0.93295 0.83903 1.50545 1.07915 1.35742 1.20433 1.23394 1.00024 0.93251 0.89744 1.21512 0.89886 1.10209 1.01940 1.16710 0.85218 0.78835 0.80401 1.90835 1.18467 1.56566 1.75166 1.45638 1.11473 1.52429 1.25397 1.22245 0.96644 0.92453 0.84991 0.87343 1.21895 0.99778 0.92906 0.85312 1.44609 1.43129 1.35761 1.09542 1.20045 1.10074 1.30002 0.85737 0.90131 1.25759 1.05921 0.96901 0.92883 1.70881 1.04027 1.42392 1.37627 0.84001 0.77274 0.75610 0.74608 1.22130 1.22488 1.22132 1.22297 0.92707 0.95812 0.92450 1.23041 0.96668 0.85299 0.92424 0.91296 1.86516 1.52994 1.33970 1.62763 1.74643 1.20276 1.06044 1.06891 1.81948 0.95645 1.19358 1.07567 0.92511 0.92281 0.92219 0.90624 0.92372 0.92319 0.92453 0.90803 0.89875 0.88359 0.87546 0.77853 0.75850 0.92347 0.95389 0.92470 0.95065 0.92710 0.77446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.46 8.95 37.16 0.33 -0.13 16 2 C -0.09 -0.31 2.92 -90.61 -0.26 -0.57 16 3 C -0.15 -0.56 9.19 37.16 0.34 -0.22 16 4 C -0.13 -0.60 4.89 -26.73 -0.13 -0.73 16 5 C 0.12 0.54 6.29 -4.04 -0.03 0.51 16 6 N -0.36 -3.15 3.69 -61.06 -0.23 -3.38 16 7 C 0.09 0.91 11.27 -16.84 -0.19 0.72 16 8 C -0.10 -1.26 6.99 -83.55 -0.58 -1.85 16 9 C 0.60 9.59 7.82 -12.47 -0.10 9.49 16 10 O -0.53 -9.92 16.61 5.28 0.09 -9.83 16 11 N -0.70 -10.92 5.23 -52.76 -0.28 -11.20 16 12 C 0.14 2.61 3.04 -65.78 -0.20 2.41 16 13 H 0.11 2.22 7.73 -51.93 -0.40 1.82 16 14 C 0.13 2.74 6.93 -2.53 -0.02 2.73 16 15 N -0.60 -15.13 3.29 -170.07 -0.56 -15.69 16 16 C -0.33 -9.66 10.41 -15.06 -0.16 -9.82 16 17 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 18 C -0.01 -0.40 5.41 -17.43 -0.09 -0.49 16 19 N -0.91 -28.58 13.70 55.49 0.76 -27.82 16 20 Si 1.05 26.47 24.71 -169.99 -4.20 22.27 16 21 H -0.29 -6.87 6.70 56.52 0.38 -6.49 16 22 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 23 H -0.29 -7.05 6.84 56.52 0.39 -6.66 16 24 C 0.09 2.04 4.73 -3.06 -0.01 2.03 16 25 C 0.09 1.49 3.94 -24.89 -0.10 1.39 16 26 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 27 O -0.56 -8.78 13.40 -35.23 -0.47 -9.25 16 28 N -0.20 -2.75 12.04 32.85 0.40 -2.36 16 29 N -0.06 -0.77 13.65 60.35 0.82 0.05 16 30 H 0.06 0.12 6.56 -51.93 -0.34 -0.22 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.11 0.24 6.51 -51.93 -0.34 -0.10 16 41 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.41 5.58 8.20 -40.82 -0.33 5.24 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 46 H 0.03 0.71 3.91 -51.93 -0.20 0.50 16 47 H 0.06 1.28 7.78 -51.93 -0.40 0.87 16 48 H 0.38 4.22 9.12 45.56 0.42 4.64 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -36.44 391.95 -5.67 -42.11 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.71 Total: 3.71 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.20 Total: 5.47 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.92 Total: -60.38 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.38 Total: -19.09 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -4.20 Total: 22.27 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.44 -5.67 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077665894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.120 kcal (2) G-P(sol) polarization free energy of solvation -36.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds