Wall clock time and date at job start Tue Mar 31 2020 20:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99932 * 2 1 4 4 H 1.08997 * 110.92147 * 26.09667 * 3 2 1 5 5 C 1.54914 * 111.00646 * 262.19398 * 3 2 1 6 6 N 1.47425 * 104.83224 * 204.91541 * 5 3 2 7 7 C 1.36935 * 125.64423 * 204.15896 * 6 5 3 8 8 H 1.07999 * 119.99579 * 179.97438 * 7 6 5 9 9 C 1.38810 * 120.00231 * 359.96802 * 7 6 5 10 10 N 1.31620 * 120.00076 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00113 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47023 * 89.99559 * 11 9 7 13 13 H 1.48497 * 109.47220 * 209.99971 * 11 9 7 14 14 H 1.48499 * 109.47036 * 330.00050 * 11 9 7 15 15 C 1.47018 * 108.70281 * 24.13393 * 6 5 3 16 16 C 1.54326 * 107.27514 * 358.93315 * 15 6 5 17 17 H 1.08997 * 110.71548 * 96.35260 * 16 15 6 18 18 N 1.46499 * 110.72299 * 219.44888 * 16 15 6 19 19 C 1.34777 * 119.99665 * 273.82488 * 18 16 15 20 20 O 1.21553 * 120.00289 * 359.72074 * 19 18 16 21 21 C 1.47869 * 119.99621 * 179.72373 * 19 18 16 22 22 N 1.34550 * 126.04955 * 0.02562 * 21 19 18 23 23 C 1.30871 * 107.26982 * 179.97438 * 22 21 19 24 24 N 1.34587 * 107.62663 * 0.02562 * 23 22 21 25 25 C 1.46498 * 125.75167 * 180.02562 * 24 23 22 26 26 C 1.53002 * 109.47070 * 74.99609 * 25 24 23 27 27 C 1.52992 * 109.47241 * 194.99778 * 25 24 23 28 28 C 1.52996 * 109.46946 * 314.99912 * 25 24 23 29 29 N 1.28851 * 108.49917 * 359.73086 * 24 23 22 30 30 H 1.08999 * 109.47199 * 300.00047 * 1 2 3 31 31 H 1.08998 * 109.47231 * 60.00432 * 1 2 3 32 32 H 1.09003 * 109.47012 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.36394 * 86.07278 * 5 3 2 34 34 H 1.08994 * 110.36325 * 323.75653 * 5 3 2 35 35 H 0.97000 * 119.99859 * 180.02562 * 10 9 7 36 36 H 1.09007 * 109.87577 * 239.51773 * 15 6 5 37 37 H 1.08995 * 110.01627 * 118.42884 * 15 6 5 38 38 H 0.97001 * 119.99790 * 93.54201 * 18 16 15 39 39 H 1.08002 * 126.18622 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.46841 * 60.00227 * 26 25 24 41 41 H 1.09004 * 109.47035 * 179.97438 * 26 25 24 42 42 H 1.08994 * 109.47075 * 300.00483 * 26 25 24 43 43 H 1.09005 * 109.47507 * 60.00107 * 27 25 24 44 44 H 1.09004 * 109.47265 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.47251 * 300.00128 * 27 25 24 46 46 H 1.09001 * 109.47529 * 60.00082 * 28 25 24 47 47 H 1.09003 * 109.47324 * 179.97438 * 28 25 24 48 48 H 1.09003 * 109.47383 * 299.99757 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0329 0.4479 5 6 2.4155 1.7328 -1.4328 6 7 3.4909 2.7229 -1.2413 7 6 3.8421 3.7019 -2.1319 8 1 4.6478 4.3817 -1.8971 9 6 3.1626 3.8206 -3.3365 10 7 2.1811 2.9919 -3.6229 11 14 3.6413 5.1566 -4.5512 12 1 4.6818 4.6366 -5.4744 13 1 2.4468 5.5668 -5.3322 14 1 4.1762 6.3286 -3.8126 15 6 4.1232 2.4854 0.0645 16 6 3.3823 1.3033 0.7243 17 1 3.9135 0.3681 0.5472 18 7 3.2107 1.5357 2.1605 19 6 4.1878 1.1873 3.0210 20 8 5.2093 0.6757 2.6059 21 6 4.0171 1.4275 4.4700 22 7 2.9424 1.9823 5.0595 23 6 3.1800 2.0180 6.3459 24 7 4.3995 1.4866 6.5500 25 6 5.0591 1.3313 7.8489 26 6 4.4193 0.1683 8.6099 27 6 6.5464 1.0438 7.6345 28 6 4.9002 2.6195 8.6588 29 7 4.8867 1.1317 5.4112 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.5685 2.1872 -1.9469 34 1 2.7852 0.8749 -1.9942 35 1 1.7065 3.0746 -4.4649 36 1 4.0315 3.3749 0.6880 37 1 5.1753 2.2346 -0.0705 38 1 2.3956 1.9440 2.4917 39 1 2.5175 2.4047 7.1062 40 1 4.5325 -0.7495 8.0329 41 1 4.9104 0.0525 9.5762 42 1 3.3597 0.3731 8.7626 43 1 7.0022 1.8723 7.0923 44 1 7.0372 0.9287 8.6009 45 1 6.6596 0.1260 7.0575 46 1 3.8406 2.8244 8.8116 47 1 5.3905 2.5039 9.6254 48 1 5.3559 3.4481 8.1166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082132656.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:03 Heat of formation + Delta-G solvation = 21.906526 kcal Electronic energy + Delta-G solvation = -29678.545980 eV Core-core repulsion = 25578.023457 eV Total energy + Delta-G solvation = -4100.522523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.55292 -41.09136 -39.59445 -38.21273 -37.53456 -35.75743 -33.93696 -33.43647 -32.07675 -30.60432 -29.02744 -28.43909 -28.38576 -27.52015 -26.51990 -25.18884 -24.01602 -22.51113 -22.08495 -21.38136 -21.08620 -19.38847 -18.71462 -18.08216 -17.61187 -17.51304 -17.17883 -16.79784 -16.06404 -16.01630 -15.78321 -15.64586 -15.32862 -15.08079 -15.00932 -14.86028 -14.57886 -13.96568 -13.80613 -13.74987 -13.29608 -13.23346 -13.19667 -13.06500 -13.01655 -12.75752 -12.73553 -12.56948 -12.38466 -12.35571 -12.04787 -11.99273 -11.91158 -11.62837 -11.52919 -11.48356 -11.42168 -10.80144 -10.67748 -10.54821 -10.20082 -8.98106 -7.80701 -5.28161 0.28523 1.09067 1.12739 1.47483 1.50105 1.58754 1.89033 2.20861 2.44887 2.72639 3.01960 3.25338 3.30424 3.54635 3.67078 3.71268 3.78401 3.82063 3.89852 3.93820 4.02718 4.32035 4.45038 4.55691 4.59597 4.61112 4.61292 4.66625 4.69996 4.78852 4.80496 4.81459 4.84572 4.88251 4.91569 5.11436 5.17350 5.23332 5.25213 5.33888 5.37316 5.44222 5.67428 5.69371 6.18075 6.27463 6.30166 6.89392 7.04516 7.07851 7.68139 8.31147 9.21120 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.002496 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.545333 B =11214.082041 C =12102.821487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.079 3.921 4 H 0.090 0.910 5 C 0.149 3.851 6 N -0.618 5.618 7 C -0.244 4.244 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.986 3.014 12 H -0.288 1.288 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.132 3.868 16 C 0.153 3.847 17 H 0.086 0.914 18 N -0.681 5.681 19 C 0.613 3.387 20 O -0.560 6.560 21 C 0.116 3.884 22 N -0.502 5.502 23 C 0.203 3.797 24 N -0.286 5.286 25 C 0.156 3.844 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.156 4.156 29 N -0.270 5.270 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.091 0.909 34 H -0.007 1.007 35 H 0.251 0.749 36 H 0.038 0.962 37 H 0.020 0.980 38 H 0.419 0.581 39 H 0.274 0.726 40 H 0.045 0.955 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.111 0.889 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.114 0.886 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -2.510 31.577 31.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C 0.020 3.980 4 H 0.108 0.892 5 C 0.023 3.977 6 N -0.345 5.345 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.813 3.187 12 H -0.215 1.215 13 H -0.214 1.214 14 H -0.194 1.194 15 C 0.006 3.994 16 C 0.047 3.953 17 H 0.104 0.896 18 N -0.332 5.332 19 C 0.397 3.603 20 O -0.436 6.436 21 C -0.162 4.162 22 N -0.229 5.229 23 C -0.091 4.091 24 N -0.083 5.083 25 C 0.076 3.924 26 C -0.213 4.213 27 C -0.208 4.208 28 C -0.214 4.214 29 N -0.111 5.111 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.011 0.989 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.256 0.744 39 H 0.289 0.711 40 H 0.064 0.936 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.129 0.871 45 H 0.069 0.931 46 H 0.111 0.889 47 H 0.133 0.867 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.011 -3.167 30.787 30.966 hybrid contribution -0.095 0.800 -0.992 1.277 sum -1.106 -2.367 29.795 29.910 Atomic orbital electron populations 1.23003 0.79172 1.03993 1.00784 1.87836 1.21878 1.26668 1.94958 1.23605 0.92810 0.85041 0.96576 0.89203 1.22059 0.93310 0.90332 0.92036 1.44543 1.38092 1.35282 1.16631 1.19448 1.14201 1.06699 0.96890 0.90034 1.25669 0.98605 1.01655 0.99509 1.69984 1.25382 1.40013 1.24228 0.84977 0.76806 0.78479 0.78413 1.21522 1.21398 1.19363 1.21640 0.95238 0.95362 0.87201 1.21807 0.96702 0.98258 0.78551 0.89641 1.45441 1.20201 1.62082 1.05506 1.16626 0.82979 0.77728 0.82968 1.90797 1.29414 1.44838 1.78561 1.23241 0.91071 1.06890 0.95026 1.71218 1.25066 1.20220 1.06347 1.27247 0.88557 0.98390 0.94911 1.48228 1.13849 1.39565 1.06628 1.21686 0.94074 1.00346 0.76276 1.22289 1.02685 0.95076 1.01276 1.22027 0.92403 1.02151 1.04181 1.22310 1.05355 0.92890 1.00804 1.74224 1.25202 1.19248 0.92429 0.92256 0.94260 0.87756 0.89163 0.98912 0.93937 0.94409 0.96221 0.74367 0.71065 0.93585 0.86768 0.89765 0.93181 0.87080 0.93090 0.88916 0.86705 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.85 113.37 1.23 1.97 16 2 O -0.40 -15.01 10.51 -148.98 -1.57 -16.58 16 3 C 0.08 3.23 3.15 31.99 0.10 3.33 16 4 H 0.09 3.30 7.69 -2.39 -0.02 3.28 16 5 C 0.15 7.71 5.62 86.86 0.49 8.20 16 6 N -0.62 -33.81 3.39 -691.99 -2.35 -36.16 16 7 C -0.24 -14.18 10.27 84.03 0.86 -13.32 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 9 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 10 N -0.95 -56.71 10.09 21.65 0.22 -56.49 16 11 Si 0.99 46.30 29.55 68.60 2.03 48.32 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 C 0.13 6.27 6.99 86.73 0.61 6.88 16 16 C 0.15 6.35 2.97 46.18 0.14 6.48 16 17 H 0.09 3.90 7.70 -2.39 -0.02 3.88 16 18 N -0.68 -24.20 5.13 -439.75 -2.25 -26.45 16 19 C 0.61 23.49 7.83 86.79 0.68 24.16 16 20 O -0.56 -25.62 16.81 -3.88 -0.07 -25.68 16 21 C 0.12 3.74 7.96 137.13 1.09 4.83 16 22 N -0.50 -12.73 11.09 -193.03 -2.14 -14.87 16 23 C 0.20 3.23 11.71 180.30 2.11 5.34 16 24 N -0.29 -5.24 3.16 -311.60 -0.99 -6.23 16 25 C 0.16 1.47 1.22 3.60 0.00 1.47 16 26 C -0.16 -0.81 8.72 71.98 0.63 -0.19 16 27 C -0.15 -1.83 8.05 71.98 0.58 -1.25 16 28 C -0.16 -0.43 8.28 71.98 0.60 0.17 16 29 N -0.27 -7.93 11.09 -52.44 -0.58 -8.51 16 30 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 2.41 8.14 -2.39 -0.02 2.40 16 33 H 0.09 5.11 5.87 -2.39 -0.01 5.10 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.04 1.74 8.03 -2.38 -0.02 1.72 16 37 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.42 12.85 8.23 -92.71 -0.76 12.09 16 39 H 0.27 0.91 7.53 -2.91 -0.02 0.89 16 40 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.08 0.20 8.14 -2.39 -0.02 0.19 16 43 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.05 0.89 8.02 -2.39 -0.02 0.87 16 46 H 0.09 -0.12 7.34 -2.39 -0.02 -0.14 16 47 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -82.92 395.50 2.09 -80.83 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.20 Total: 16.79 kcal Atomic # 6 Polarization: 35.43 SS G_CDS: 9.58 Total: 45.01 kcal Atomic # 7 Polarization: -140.60 SS G_CDS: -8.09 Total: -148.70 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.63 Total: -42.26 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -82.92 2.09 -80.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082132656.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.738 kcal (2) G-P(sol) polarization free energy of solvation -82.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds