Wall clock time and date at job start Tue Mar 31 2020 20:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 H 1.08997 * 109.87233 * 54.20846 * 3 2 1 5 5 C 1.54425 * 110.00906 * 293.12504 * 3 2 1 6 6 H 1.09000 * 110.72234 * 336.65735 * 5 3 2 7 7 N 1.46498 * 110.76687 * 99.96199 * 5 3 2 8 8 C 1.34769 * 120.00475 * 199.94496 * 7 5 3 9 9 O 1.21280 * 119.99959 * 359.97438 * 8 7 5 10 10 C 1.50705 * 120.00152 * 180.02562 * 8 7 5 11 11 N 1.46491 * 109.47035 * 179.97438 * 10 8 7 12 12 N 1.40170 * 126.35574 * 269.68733 * 11 10 8 13 13 C 1.29396 * 108.14695 * 179.81956 * 12 11 10 14 14 C 1.50700 * 125.58817 * 180.13851 * 13 12 11 15 15 N 1.37359 * 108.82836 * 0.44302 * 13 12 11 16 16 C 1.46493 * 125.83657 * 179.74848 * 15 13 12 17 17 C 1.34822 * 108.33373 * 359.71620 * 15 13 12 18 18 O 1.21815 * 126.30304 * 179.97438 * 17 15 13 19 19 C 1.55160 * 102.89542 * 218.32047 * 5 3 2 20 20 C 1.54912 * 101.61626 * 35.49904 * 19 5 3 21 21 N 1.47026 * 109.88211 * 175.22674 * 3 2 1 22 22 C 1.36935 * 125.64807 * 298.47984 * 21 3 2 23 23 H 1.07994 * 120.00083 * 347.93778 * 22 21 3 24 24 C 1.38816 * 119.99783 * 167.94757 * 22 21 3 25 25 N 1.31619 * 119.99929 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99733 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47495 * 59.99349 * 26 24 22 28 28 H 1.48500 * 109.46985 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.47202 * 299.99476 * 26 24 22 30 30 H 1.09001 * 109.47136 * 185.44192 * 1 2 3 31 31 H 1.09005 * 109.47340 * 305.43781 * 1 2 3 32 32 H 1.09002 * 109.47523 * 65.43796 * 1 2 3 33 33 H 1.08998 * 109.46799 * 240.00365 * 2 1 3 34 34 H 1.08993 * 109.47356 * 120.00231 * 2 1 3 35 35 H 0.97010 * 119.99437 * 19.94156 * 7 5 3 36 36 H 1.09001 * 109.46789 * 299.99352 * 10 8 7 37 37 H 1.09001 * 109.46992 * 59.99833 * 10 8 7 38 38 H 1.08997 * 109.47033 * 270.35673 * 14 13 12 39 39 H 1.08994 * 109.47242 * 30.35901 * 14 13 12 40 40 H 1.08998 * 109.47037 * 150.35538 * 14 13 12 41 41 H 1.09002 * 109.47732 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.47502 * 299.98853 * 16 15 13 43 43 H 1.08999 * 109.47214 * 59.98521 * 16 15 13 44 44 H 1.08991 * 111.00325 * 277.40363 * 19 5 3 45 45 H 1.09005 * 111.00459 * 153.58744 * 19 5 3 46 46 H 1.08998 * 110.36899 * 81.80489 * 20 19 5 47 47 H 1.09002 * 110.36613 * 204.02698 * 20 19 5 48 48 H 0.96999 * 119.99519 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5982 1.9916 0.8315 5 6 1.6788 2.1306 -1.3344 6 1 1.5271 1.3913 -2.1209 7 7 0.4917 2.9750 -1.1789 8 6 -0.2239 3.3378 -2.2617 9 8 0.1151 2.9656 -3.3651 10 6 -1.4446 4.2068 -2.1017 11 7 -2.0407 4.4584 -3.4160 12 7 -1.7419 5.5264 -4.2732 13 6 -2.4673 5.4039 -5.3377 14 6 -2.4568 6.3399 -6.5187 15 7 -3.2537 4.2847 -5.2119 16 6 -4.2200 3.7999 -6.2003 17 6 -2.9836 3.7081 -4.0235 18 8 -3.4967 2.6963 -3.5796 19 6 2.9329 2.9955 -1.6286 20 6 4.0691 2.0909 -1.0896 21 7 3.5056 1.4547 0.1151 22 6 4.2277 0.9580 1.1672 23 1 3.7280 0.6892 2.0861 24 6 5.6021 0.8002 1.0528 25 7 6.2111 1.1275 -0.0672 26 14 6.5870 0.1220 2.4878 27 1 6.0966 -1.2382 2.8260 28 1 8.0223 0.0514 2.1136 29 1 6.4250 1.0134 3.6646 30 1 -0.3633 -1.0230 0.0975 31 1 -0.3634 0.5959 0.8373 32 1 -0.3634 0.4272 -0.9347 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.2208 3.2729 -0.2963 36 1 -2.1698 3.7008 -1.4643 37 1 -1.1587 5.1545 -1.6454 38 1 -3.1892 7.1316 -6.3613 39 1 -1.4648 6.7786 -6.6257 40 1 -2.7087 5.7864 -7.4232 41 1 -4.6956 2.8921 -5.8289 42 1 -4.9787 4.5636 -6.3718 43 1 -3.7049 3.5831 -7.1361 44 1 2.8932 3.9390 -1.0843 45 1 3.0459 3.1687 -2.6989 46 1 4.3351 1.3350 -1.8286 47 1 4.9414 2.6911 -0.8309 48 1 7.1715 1.0176 -0.1470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087813821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:26 Heat of formation + Delta-G solvation = 36.821183 kcal Electronic energy + Delta-G solvation = -30037.918680 eV Core-core repulsion = 25938.042905 eV Total energy + Delta-G solvation = -4099.875775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.60939 -39.71804 -37.75856 -37.45778 -35.51335 -34.02742 -32.77296 -32.50751 -31.74427 -30.61730 -28.96036 -27.64447 -27.05330 -25.98923 -24.29691 -22.43568 -21.83936 -21.24511 -20.61256 -20.13854 -19.55805 -17.63191 -17.53862 -16.83044 -16.46893 -16.25956 -15.92456 -15.52009 -14.94176 -14.74261 -14.23789 -14.18691 -13.95905 -13.88649 -13.77637 -13.56904 -13.15972 -13.13783 -12.94692 -12.67972 -12.48361 -12.11708 -12.01617 -11.94641 -11.88665 -11.62064 -11.11406 -10.87308 -10.82541 -10.60030 -10.58599 -10.42234 -10.40497 -10.23674 -10.09802 -9.75862 -9.62909 -9.57899 -8.66596 -8.61480 -8.56167 -6.81980 -5.73117 -3.09737 1.50068 1.72658 2.52627 2.70046 2.77927 3.37111 3.40803 3.45095 3.46017 4.09688 4.31929 4.48296 4.64727 4.75860 4.79266 4.84846 4.94793 4.98712 5.15079 5.28705 5.31134 5.37279 5.39441 5.53610 5.56353 5.63759 5.77864 5.82524 5.88025 5.89789 6.08867 6.25354 6.31103 6.32419 6.43648 6.49554 6.58597 6.70504 6.75221 6.96432 7.15409 7.45728 7.53798 7.59863 7.67713 7.80570 7.89618 8.27185 8.36351 9.19093 9.80137 10.47261 11.37860 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025035 B = 0.002449 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.177538 B =11428.812389 C =12090.641493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.036 0.964 5 C 0.140 3.860 6 H 0.091 0.909 7 N -0.710 5.710 8 C 0.496 3.504 9 O -0.528 6.528 10 C 0.142 3.858 11 N -0.435 5.435 12 N -0.270 5.270 13 C 0.273 3.727 14 C -0.074 4.074 15 N -0.558 5.558 16 C 0.096 3.904 17 C 0.654 3.346 18 O -0.553 6.553 19 C -0.155 4.155 20 C 0.173 3.827 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.918 5.918 26 Si 0.911 3.089 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.079 0.921 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.150 11.562 -10.980 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.053 0.947 5 C 0.036 3.964 6 H 0.109 0.891 7 N -0.362 5.362 8 C 0.279 3.721 9 O -0.403 6.403 10 C 0.017 3.983 11 N -0.254 5.254 12 N -0.092 5.092 13 C -0.006 4.006 14 C -0.133 4.133 15 N -0.288 5.288 16 C -0.046 4.046 17 C 0.354 3.646 18 O -0.426 6.426 19 C -0.195 4.195 20 C 0.048 3.952 21 N -0.319 5.319 22 C -0.355 4.355 23 H 0.093 0.907 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.742 3.258 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.233 0.767 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.098 0.902 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.287 11.033 -10.870 25.524 hybrid contribution 0.000 -0.844 0.815 1.173 sum -20.287 10.189 -10.056 24.829 Atomic orbital electron populations 1.21771 0.97154 1.00609 1.00944 1.22019 0.93652 0.99136 1.02378 1.21078 0.87215 0.93393 0.92938 0.94652 1.22119 0.83191 0.92320 0.98803 0.89149 1.45979 1.28757 1.52426 1.09018 1.20753 0.84627 0.81402 0.85296 1.90727 1.69677 1.54688 1.25256 1.21249 0.94931 1.01956 0.80213 1.48149 1.37002 1.22766 1.17485 1.76984 1.21964 1.09588 1.00706 1.24165 0.90222 0.89139 0.97046 1.20409 1.05639 0.96347 0.90915 1.45778 1.38814 1.25315 1.18848 1.21811 0.90796 1.01518 0.90450 1.16618 0.82349 0.84064 0.81602 1.91082 1.58581 1.23574 1.69409 1.23416 0.96621 0.99074 1.00366 1.21481 0.93218 0.93103 0.87444 1.44449 0.98459 1.69011 1.19960 1.18908 0.89347 1.35996 0.91277 0.90669 1.24875 0.96898 1.01157 0.97244 1.69918 1.08925 1.52826 1.24797 0.86215 0.79185 0.78985 0.81442 1.21128 1.21620 1.21141 0.93657 0.93376 0.93327 0.92481 0.91632 0.76708 0.85864 0.85743 0.88826 0.88218 0.89407 0.88695 0.90371 0.90364 0.91993 0.92001 0.95737 0.90245 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.65 37.16 0.36 -1.92 16 2 C -0.13 -2.51 5.43 -26.73 -0.15 -2.66 16 3 C 0.16 3.24 2.91 -66.90 -0.19 3.04 16 4 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 5 C 0.14 2.59 2.00 -66.04 -0.13 2.45 16 6 H 0.09 1.86 7.35 -51.93 -0.38 1.48 16 7 N -0.71 -10.36 4.99 -51.98 -0.26 -10.62 16 8 C 0.50 7.71 7.90 -10.99 -0.09 7.62 16 9 O -0.53 -10.66 16.16 5.56 0.09 -10.57 16 10 C 0.14 1.68 6.87 -5.20 -0.04 1.65 16 11 N -0.43 -6.11 3.11 -66.31 -0.21 -6.31 16 12 N -0.27 -3.43 12.53 32.97 0.41 -3.02 16 13 C 0.27 2.63 7.98 -154.16 -1.23 1.40 16 14 C -0.07 -0.30 10.20 36.01 0.37 0.06 16 15 N -0.56 -6.01 3.14 -125.41 -0.39 -6.41 16 16 C 0.10 0.59 10.65 59.84 0.64 1.23 16 17 C 0.65 9.76 8.61 -86.72 -0.75 9.01 16 18 O -0.55 -9.84 17.48 5.09 0.09 -9.75 16 19 C -0.16 -3.11 6.76 -24.58 -0.17 -3.28 16 20 C 0.17 4.23 5.46 -2.53 -0.01 4.22 16 21 N -0.59 -14.77 3.13 -162.51 -0.51 -15.28 16 22 C -0.23 -6.16 9.72 -15.06 -0.15 -6.31 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C 0.00 -0.14 5.47 -17.43 -0.10 -0.23 16 25 N -0.92 -26.79 10.48 55.49 0.58 -26.20 16 26 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.77 7.47 -51.93 -0.39 0.39 16 33 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 34 H 0.06 1.33 7.85 -51.93 -0.41 0.92 16 35 H 0.40 4.57 8.32 -40.82 -0.34 4.23 16 36 H 0.12 1.21 8.11 -51.93 -0.42 0.79 16 37 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.19 7.85 -51.93 -0.41 -0.22 16 41 H 0.09 0.69 7.73 -51.93 -0.40 0.29 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.02 0.66 8.11 -51.93 -0.42 0.24 16 47 H 0.08 2.15 6.74 -51.93 -0.35 1.80 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -38.21 396.19 -8.56 -46.77 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.69 Total: 2.21 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: -1.63 Total: 16.29 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.37 Total: -67.83 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.18 Total: -20.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.21 -8.56 -46.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087813821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.593 kcal (2) G-P(sol) polarization free energy of solvation -38.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds