Wall clock time and date at job start Tue Mar 31 2020 20:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46931 * 2 1 4 4 C 1.52999 * 109.47141 * 240.00150 * 2 1 3 5 5 N 1.46495 * 109.47445 * 119.99771 * 2 1 3 6 6 C 1.34593 * 125.74430 * 74.99812 * 5 2 1 7 7 N 1.30867 * 107.62246 * 179.75638 * 6 5 2 8 8 C 1.34548 * 107.27257 * 0.24588 * 7 6 5 9 9 C 1.47869 * 126.05072 * 179.97438 * 8 7 6 10 10 O 1.21556 * 120.00086 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00009 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00131 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46240 * 34.97476 * 12 11 9 14 14 C 1.53044 * 109.46405 * 275.00372 * 12 11 9 15 15 C 1.53190 * 109.31437 * 178.61381 * 14 12 11 16 16 N 1.46921 * 108.77433 * 54.63521 * 15 14 12 17 17 C 1.36944 * 120.62884 * 126.36872 * 16 15 14 18 18 H 1.07997 * 119.99893 * 207.68209 * 17 16 15 19 19 C 1.38811 * 119.99925 * 27.68272 * 17 16 15 20 20 N 1.31615 * 120.00169 * 17.37100 * 19 17 16 21 21 Si 1.86804 * 120.00046 * 197.37028 * 19 17 16 22 22 H 1.48508 * 109.46830 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46851 * 119.99745 * 21 19 17 24 24 H 1.48495 * 109.47249 * 240.00149 * 21 19 17 25 25 C 1.46925 * 118.74275 * 306.38671 * 16 15 14 26 26 C 1.53039 * 109.46214 * 154.93557 * 12 11 9 27 27 H 1.09001 * 109.49993 * 61.43664 * 26 12 11 28 28 O 1.42906 * 109.49716 * 301.33520 * 26 12 11 29 29 N 1.28847 * 125.75421 * 255.18856 * 5 2 1 30 30 H 1.08998 * 109.47228 * 299.99971 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99887 * 1 2 3 32 32 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46852 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46899 * 299.99632 * 3 2 1 35 35 H 1.08998 * 109.47141 * 59.99976 * 3 2 1 36 36 H 1.09000 * 109.47202 * 299.99784 * 4 2 1 37 37 H 1.08997 * 109.46983 * 59.99682 * 4 2 1 38 38 H 1.09002 * 109.47086 * 179.97438 * 4 2 1 39 39 H 1.08000 * 126.18651 * 0.02562 * 6 5 2 40 40 H 0.97002 * 120.00016 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.49099 * 298.57039 * 14 12 11 42 42 H 1.08997 * 109.49681 * 58.62696 * 14 12 11 43 43 H 1.09001 * 109.58006 * 174.42389 * 15 14 12 44 44 H 1.08994 * 109.58507 * 294.84441 * 15 14 12 45 45 H 0.97005 * 120.00200 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58770 * 173.39505 * 25 16 15 47 47 H 1.08995 * 109.58659 * 293.68332 * 25 16 15 48 48 H 0.96698 * 114.00364 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6905 1.1961 6 6 2.0139 -2.0221 1.3922 7 7 2.5327 -2.2506 2.5717 8 6 2.8524 -1.0576 3.1055 9 6 3.4666 -0.8342 4.4319 10 8 3.7097 0.2963 4.8065 11 7 3.7570 -1.8841 5.2255 12 6 4.3651 -1.6628 6.5398 13 1 3.9722 -0.7422 6.9714 14 6 5.8833 -1.5464 6.3862 15 6 6.5124 -1.2806 7.7574 16 7 6.0789 -2.3314 8.6883 17 6 6.9980 -3.0579 9.3974 18 1 6.7646 -4.0645 9.7115 19 6 8.2296 -2.5005 9.7125 20 7 8.3987 -1.1970 9.6449 21 14 9.6471 -3.6004 10.2326 22 1 9.2018 -5.0171 10.2278 23 1 10.7768 -3.4339 9.2833 24 1 10.0895 -3.2246 11.5994 25 6 4.6407 -2.5883 8.8436 26 6 4.0326 -2.8395 7.4601 27 1 4.4467 -3.7569 7.0418 28 8 2.6141 -2.9663 7.5786 29 7 2.5214 -0.1254 2.2391 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 1.6520 -2.7674 0.6994 40 1 3.5634 -2.7864 4.9264 41 1 6.2799 -2.4760 5.9779 42 1 6.1187 -0.7232 5.7117 43 1 7.5988 -1.2952 7.6700 44 1 6.1866 -0.3082 8.1266 45 1 9.2594 -0.8075 9.8647 46 1 4.4921 -3.4659 9.4728 47 1 4.1626 -1.7236 9.3037 48 1 2.3305 -3.6942 8.1485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090568291.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:48 Heat of formation + Delta-G solvation = 28.164632 kcal Electronic energy + Delta-G solvation = -29757.601010 eV Core-core repulsion = 25657.349859 eV Total energy + Delta-G solvation = -4100.251151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.62330 -39.55901 -37.96109 -37.48093 -35.34028 -34.28743 -32.80738 -31.88069 -31.12946 -29.88446 -28.51124 -28.11662 -27.96927 -25.64545 -24.14883 -23.17748 -22.31011 -21.71642 -20.37373 -20.17797 -19.48367 -17.91956 -17.07631 -16.72933 -16.65199 -16.39572 -15.94671 -15.14318 -14.77852 -14.73424 -14.68414 -14.14377 -14.03723 -13.85600 -13.47521 -13.30116 -13.14527 -13.02124 -12.86427 -12.70860 -12.38990 -12.25162 -12.21630 -12.02610 -11.85645 -11.51956 -11.50767 -11.07670 -10.85974 -10.62969 -10.53816 -10.49467 -10.26890 -10.21308 -10.01456 -9.88066 -9.67402 -9.62216 -9.42550 -8.68756 -8.40616 -6.73354 -5.81124 -3.24879 1.39305 1.91499 2.06020 3.22227 3.37128 3.44700 3.46738 3.56653 3.82059 4.04978 4.08306 4.18401 4.41663 4.51015 4.58028 4.77539 4.82069 4.96220 5.00429 5.09650 5.15008 5.24073 5.35011 5.35550 5.37114 5.53006 5.53421 5.62894 5.74386 5.83370 5.92994 6.04068 6.16458 6.22293 6.36625 6.38849 6.53730 6.58088 6.72961 6.83021 6.91691 7.34304 7.64931 7.70132 7.77227 7.99651 8.03553 8.41530 8.46588 9.17004 9.79599 10.35526 11.27456 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.002312 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.095216 B =12110.139034 C =12496.137371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.295 5.295 6 C 0.185 3.815 7 N -0.483 5.483 8 C 0.146 3.854 9 C 0.612 3.388 10 O -0.522 6.522 11 N -0.693 5.693 12 C 0.164 3.836 13 H 0.090 0.910 14 C -0.148 4.148 15 C 0.171 3.829 16 N -0.589 5.589 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.121 3.879 26 C 0.081 3.919 27 H 0.058 0.942 28 O -0.570 6.570 29 N -0.249 5.249 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.220 0.780 40 H 0.406 0.594 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.025 0.975 45 H 0.255 0.745 46 H 0.060 0.940 47 H 0.030 0.970 48 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 -1.423 -23.201 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.092 5.092 6 C -0.110 4.110 7 N -0.208 5.208 8 C -0.134 4.134 9 C 0.393 3.607 10 O -0.395 6.395 11 N -0.344 5.344 12 C 0.061 3.939 13 H 0.108 0.892 14 C -0.188 4.188 15 C 0.045 3.955 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.542 5.542 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.006 4.006 26 C 0.020 3.980 27 H 0.076 0.924 28 O -0.374 6.374 29 N -0.087 5.087 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.236 0.764 40 H 0.241 0.759 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.917 0.388 -22.965 27.945 hybrid contribution 0.487 -1.629 0.128 1.705 sum -15.430 -1.241 -22.837 27.589 Atomic orbital electron populations 1.22265 0.91778 1.03604 1.04143 1.21148 0.95282 0.94396 0.80691 1.22002 1.02681 0.92217 1.03782 1.22259 1.02772 1.01112 0.95653 1.47777 1.41761 1.06234 1.13396 1.26284 1.01927 0.86466 0.96335 1.71285 1.16345 1.26098 1.07070 1.23910 1.05856 0.85469 0.98184 1.16283 0.78203 0.85237 0.81007 1.90831 1.53131 1.22511 1.72999 1.45788 1.61759 1.09062 1.17766 1.21090 0.93856 0.98852 0.80139 0.89196 1.22630 0.92789 1.01551 1.01825 1.20840 1.00387 0.90137 0.84132 1.44061 0.99061 1.41547 1.46585 1.19200 0.94877 0.94686 1.29887 0.91475 1.25069 0.99700 0.95311 0.99439 1.70048 1.23609 1.08860 1.51731 0.86215 0.82577 0.80085 0.77818 1.20229 1.21490 1.21685 1.21531 0.86980 0.99457 0.92675 1.22770 0.80237 0.97073 0.97942 0.92410 1.86497 1.22332 1.56493 1.72089 1.74305 1.13554 1.25427 0.95395 0.91196 0.89610 0.91356 0.91201 0.90351 0.90451 0.91136 0.89345 0.91094 0.76373 0.75932 0.92169 0.91825 0.88796 0.95705 0.93508 0.92112 0.95232 0.78014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 8.72 37.16 0.32 -0.39 16 2 C 0.17 1.03 1.23 -131.82 -0.16 0.87 16 3 C -0.15 -1.01 8.05 37.16 0.30 -0.71 16 4 C -0.16 -0.56 8.28 37.16 0.31 -0.25 16 5 N -0.29 -3.02 3.17 -49.84 -0.16 -3.18 16 6 C 0.19 1.79 11.71 -90.48 -1.06 0.73 16 7 N -0.48 -6.60 11.09 -12.36 -0.14 -6.74 16 8 C 0.15 2.38 7.96 -156.36 -1.24 1.13 16 9 C 0.61 11.53 7.80 -12.32 -0.10 11.43 16 10 O -0.52 -11.52 16.75 5.32 0.09 -11.44 16 11 N -0.69 -12.12 4.91 -54.70 -0.27 -12.39 16 12 C 0.16 3.17 2.12 -67.89 -0.14 3.03 16 13 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 14 C -0.15 -3.05 5.65 -26.61 -0.15 -3.20 16 15 C 0.17 4.20 5.31 -3.71 -0.02 4.18 16 16 N -0.59 -14.68 2.99 -172.33 -0.52 -15.19 16 17 C -0.26 -6.95 9.59 -15.06 -0.14 -7.10 16 18 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 19 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 20 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 21 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.12 2.52 6.14 -3.71 -0.02 2.50 16 26 C 0.08 1.45 3.14 -26.61 -0.08 1.36 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 O -0.57 -9.09 13.16 -35.23 -0.46 -9.56 16 29 N -0.25 -3.70 11.09 32.07 0.36 -3.35 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.67 8.02 -51.93 -0.42 0.26 16 36 H 0.07 0.15 7.34 -51.93 -0.38 -0.23 16 37 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.22 1.00 7.53 -52.49 -0.39 0.61 16 40 H 0.41 6.41 8.31 -40.82 -0.34 6.07 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.09 2.54 6.04 -51.93 -0.31 2.23 16 44 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.37 4.29 9.08 45.56 0.41 4.70 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -35.60 391.60 -8.75 -44.34 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.86 Total: 7.01 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: -2.28 Total: 13.61 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.10 Total: -66.38 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.37 Total: -20.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.60 -8.75 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090568291.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.506 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds