Wall clock time and date at job start Tue Mar 31 2020 20:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47399 * 2 1 4 4 C 1.52999 * 109.47634 * 120.00261 * 2 1 3 5 5 H 1.08998 * 109.46702 * 304.39622 * 4 2 1 6 6 O 1.42903 * 109.46683 * 64.39429 * 4 2 1 7 7 C 1.50700 * 109.47513 * 184.39464 * 4 2 1 8 8 O 1.21282 * 119.99817 * 275.23588 * 7 4 2 9 9 N 1.34774 * 119.99958 * 95.22839 * 7 4 2 10 10 C 1.47025 * 125.64962 * 355.83879 * 9 7 4 11 11 C 1.54317 * 107.27330 * 178.99202 * 10 9 7 12 12 C 1.55156 * 102.94253 * 337.80821 * 11 10 9 13 13 H 1.09003 * 111.00346 * 277.38919 * 12 11 10 14 14 N 1.46501 * 111.00480 * 153.57726 * 12 11 10 15 15 C 1.35312 * 125.87111 * 329.55856 * 14 12 11 16 16 C 1.35340 * 106.17916 * 180.02562 * 15 14 12 17 17 C 1.50701 * 126.75517 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47076 * 94.99493 * 17 16 15 19 19 C 1.36938 * 119.99666 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00520 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00027 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99830 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00339 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47105 * 59.99990 * 23 21 19 25 25 H 1.48502 * 109.47486 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46995 * 300.00014 * 23 21 19 27 27 N 1.33771 * 106.49585 * 0.02562 * 16 15 14 28 28 N 1.28632 * 108.88779 * 359.97438 * 27 16 15 29 29 C 1.47470 * 125.62959 * 175.85765 * 9 7 4 30 30 H 1.09000 * 109.47194 * 299.99405 * 1 2 3 31 31 H 1.08996 * 109.47529 * 59.99215 * 1 2 3 32 32 H 1.09004 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47194 * 240.00595 * 2 1 3 34 34 H 1.08997 * 109.47559 * 174.74292 * 3 2 1 35 35 H 1.09000 * 109.47157 * 294.75389 * 3 2 1 36 36 H 1.09005 * 109.46383 * 54.74059 * 3 2 1 37 37 H 0.96700 * 113.99995 * 60.00337 * 6 4 2 38 38 H 1.09000 * 109.88212 * 59.56986 * 10 9 7 39 39 H 1.09001 * 109.87937 * 298.40895 * 10 9 7 40 40 H 1.09000 * 110.72114 * 219.43980 * 11 10 9 41 41 H 1.09004 * 110.71845 * 96.16614 * 11 10 9 42 42 H 1.08000 * 126.90897 * 0.07601 * 15 14 12 43 43 H 1.09000 * 109.47269 * 214.99811 * 17 16 15 44 44 H 1.09008 * 109.47006 * 334.99779 * 17 16 15 45 45 H 0.96989 * 120.00290 * 0.02562 * 18 17 16 46 46 H 0.97001 * 119.99682 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.34799 * 85.23612 * 29 9 7 48 48 H 1.09000 * 110.40101 * 322.89983 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6138 -0.2550 2.1374 6 8 1.6499 -2.0951 1.1986 7 6 3.5431 -0.6277 1.3048 8 8 4.2234 -1.4298 0.7008 9 7 4.1314 0.3474 2.0256 10 6 3.4327 1.4315 2.7315 11 6 4.5070 2.2872 3.4351 12 6 5.7069 1.3107 3.5526 13 1 5.5983 0.6609 4.4210 14 7 6.9757 2.0415 3.6026 15 6 7.2288 3.2320 3.0115 16 6 8.5128 3.5367 3.3116 17 6 9.2710 4.7673 2.8851 18 7 9.1935 5.7793 3.9415 19 6 9.8119 6.9899 3.7766 20 1 10.3571 7.1985 2.8680 21 6 9.7389 7.9486 4.7778 22 7 9.0757 7.6938 5.8858 23 14 10.5818 9.6003 4.5526 24 1 10.0206 10.2839 3.3598 25 1 10.3559 10.4396 5.7567 26 1 12.0396 9.3903 4.3627 27 7 8.9766 2.5307 4.0614 28 7 8.0415 1.6609 4.2158 29 6 5.5825 0.5036 2.2363 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1259 1.4440 0.0942 35 1 1.7555 1.9285 -0.9332 36 1 1.6017 1.9828 0.8392 37 1 1.9941 -2.5737 0.4321 38 1 2.7496 1.0127 3.4706 39 1 2.8804 2.0429 2.0179 40 1 4.1657 2.5996 4.4220 41 1 4.7714 3.1515 2.8258 42 1 6.5437 3.8210 2.4198 43 1 10.3145 4.5075 2.7066 44 1 8.8336 5.1642 1.9689 45 1 8.7042 5.5918 4.7577 46 1 9.0250 8.3637 6.5856 47 1 6.0283 1.0560 1.4091 48 1 6.0582 -0.4714 2.3426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098666886.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:38 Heat of formation + Delta-G solvation = 7.105568 kcal Electronic energy + Delta-G solvation = -29311.820924 eV Core-core repulsion = 25210.656583 eV Total energy + Delta-G solvation = -4101.164341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.33598 -41.72590 -39.37770 -37.91701 -36.83230 -35.62370 -34.98037 -33.70472 -31.94511 -31.61541 -30.37922 -28.26011 -27.90720 -27.62232 -25.15591 -24.81767 -23.92048 -22.24642 -22.08485 -21.62323 -20.64264 -19.39612 -19.01997 -18.40505 -17.85461 -17.39072 -16.93567 -16.68470 -16.44536 -16.13308 -15.91711 -15.48135 -15.32127 -15.05097 -14.81441 -14.55568 -14.42239 -14.27951 -14.14461 -13.79603 -13.63072 -13.40012 -13.26915 -13.11827 -12.88886 -12.82957 -12.79970 -12.71003 -12.57852 -12.14535 -12.12074 -12.04642 -11.89203 -11.80785 -11.76366 -11.46189 -11.11777 -10.93189 -10.66798 -10.25534 -9.90229 -9.00512 -7.91728 -5.22006 0.53752 1.07471 1.32417 1.44151 1.52194 1.55179 1.61104 1.82607 2.60906 2.92322 3.12319 3.26284 3.34903 3.42498 3.48367 3.63640 3.66455 3.79742 3.85830 3.92194 4.03035 4.19375 4.23008 4.25764 4.28992 4.35208 4.46135 4.55458 4.55870 4.64162 4.77012 4.78715 4.86154 4.88304 4.94242 4.96802 5.02980 5.11636 5.18244 5.18375 5.33702 5.41833 5.52540 5.62804 6.17416 6.27914 6.47595 6.84238 7.35028 7.47900 8.05993 8.32146 9.31845 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020400 B = 0.002106 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.209356 B =13294.712395 C =14020.038048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.160 4.160 4 C 0.108 3.892 5 H 0.142 0.858 6 O -0.551 6.551 7 C 0.505 3.495 8 O -0.580 6.580 9 N -0.607 5.607 10 C 0.087 3.913 11 C -0.134 4.134 12 C 0.128 3.872 13 H 0.137 0.863 14 N -0.276 5.276 15 C -0.014 4.014 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.738 5.738 19 C -0.244 4.244 20 H 0.084 0.916 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.978 3.022 24 H -0.271 1.271 25 H -0.298 1.298 26 H -0.281 1.281 27 N -0.297 5.297 28 N -0.112 5.112 29 C 0.104 3.896 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.391 0.609 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.229 0.771 43 H 0.027 0.973 44 H 0.065 0.935 45 H 0.371 0.629 46 H 0.251 0.749 47 H 0.076 0.924 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.489 -15.340 -12.361 31.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.217 4.217 4 C 0.045 3.955 5 H 0.160 0.840 6 O -0.358 6.358 7 C 0.295 3.705 8 O -0.460 6.460 9 N -0.343 5.343 10 C -0.034 4.034 11 C -0.173 4.173 12 C 0.026 3.974 13 H 0.155 0.845 14 N -0.070 5.070 15 C -0.165 4.165 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.381 5.381 19 C -0.375 4.375 20 H 0.101 0.899 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.197 1.197 25 H -0.224 1.224 26 H -0.207 1.207 27 N -0.163 5.163 28 N -0.090 5.090 29 C -0.020 4.020 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.241 0.759 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.245 0.755 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.094 0.906 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.752 -16.700 -11.402 31.194 hybrid contribution 0.759 1.145 -0.608 1.502 sum -22.993 -15.555 -12.010 30.247 Atomic orbital electron populations 1.21750 0.92194 1.02575 1.03105 1.21703 0.98365 0.97254 0.96107 1.22127 1.00632 0.94759 1.04222 1.22155 0.86736 0.84330 1.02258 0.84016 1.86573 1.75292 1.21539 1.52368 1.21959 0.92639 0.78817 0.77075 1.90724 1.66770 1.42746 1.45739 1.48455 1.06482 1.28256 1.51061 1.22731 0.95386 0.87874 0.97454 1.23226 0.91450 0.97602 1.04988 1.22995 0.78627 0.95186 1.00619 0.84482 1.47323 1.11577 1.15145 1.32910 1.23698 0.98323 0.90111 1.04397 1.22302 0.94791 0.98171 1.02093 1.18975 0.95971 0.82623 0.91692 1.42483 1.63782 1.13159 1.18646 1.19646 1.25065 0.91297 1.01537 0.89860 1.25625 1.02344 1.02544 0.96374 1.69844 1.48247 1.35894 1.08234 0.85146 0.78251 0.79259 0.76680 1.19666 1.22401 1.20714 1.75049 1.22959 1.01951 1.16382 1.78212 0.90664 1.22120 1.18001 1.22318 0.83328 1.00687 0.95714 0.91062 0.91542 0.92446 0.91341 0.93378 0.91183 0.89353 0.75881 0.87454 0.86795 0.86156 0.87796 0.75487 0.95540 0.91770 0.79733 0.94062 0.90587 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.09 71.98 0.65 -0.12 16 2 C -0.11 -0.89 2.70 -10.79 -0.03 -0.92 16 3 C -0.16 -0.92 7.54 71.98 0.54 -0.38 16 4 C 0.11 1.11 2.66 29.85 0.08 1.19 16 5 H 0.14 0.78 6.90 -2.39 -0.02 0.76 16 6 O -0.55 -7.63 12.76 -132.85 -1.69 -9.32 16 7 C 0.51 8.34 5.83 87.66 0.51 8.85 16 8 O -0.58 -15.00 16.80 13.09 0.22 -14.78 16 9 N -0.61 -7.51 2.79 -811.69 -2.26 -9.77 16 10 C 0.09 0.39 5.68 86.73 0.49 0.88 16 11 C -0.13 -0.99 6.35 31.78 0.20 -0.79 16 12 C 0.13 1.94 4.10 46.38 0.19 2.13 16 13 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 14 N -0.28 -6.95 3.38 -320.59 -1.08 -8.03 16 15 C -0.01 -0.37 10.60 83.49 0.89 0.52 16 16 C -0.04 -1.30 6.61 41.59 0.28 -1.02 16 17 C 0.24 9.66 6.82 85.63 0.58 10.24 16 18 N -0.74 -38.19 5.59 -347.16 -1.94 -40.13 16 19 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 22 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 23 Si 0.98 45.78 29.55 68.60 2.03 47.80 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 N -0.30 -12.18 12.41 -48.61 -0.60 -12.78 16 28 N -0.11 -3.89 13.17 37.02 0.49 -3.40 16 29 C 0.10 1.71 6.59 86.85 0.57 2.29 16 30 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.42 7.81 -2.39 -0.02 0.40 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.42 5.90 -2.39 -0.01 0.41 16 35 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.09 0.11 6.63 -2.38 -0.02 0.09 16 37 H 0.39 4.46 8.65 -74.06 -0.64 3.82 16 38 H 0.11 0.04 7.65 -2.39 -0.02 0.02 16 39 H 0.11 0.10 4.63 -2.39 -0.01 0.09 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 0.70 6.31 -2.38 -0.02 0.69 16 42 H 0.23 3.93 6.91 -2.91 -0.02 3.91 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.37 20.98 7.66 -92.72 -0.71 20.27 16 46 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 47 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 Total: -1.00 -82.54 387.43 1.35 -81.19 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.35 Total: 22.65 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.27 Total: 6.21 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -5.12 Total: -133.76 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.48 Total: -24.10 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -82.54 1.35 -81.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098666886.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.298 kcal (2) G-P(sol) polarization free energy of solvation -82.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds