Wall clock time and date at job start Tue Mar 31 2020 20:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47201 * 2 1 4 4 C 1.42910 * 113.99777 * 184.82802 * 3 2 1 5 5 H 1.08997 * 109.46843 * 329.39992 * 4 3 2 6 6 C 1.52995 * 109.47116 * 209.39867 * 4 3 2 7 7 C 1.52996 * 109.47104 * 65.28982 * 6 4 3 8 8 C 1.50699 * 109.47031 * 89.39816 * 4 3 2 9 9 O 1.21290 * 119.99676 * 4.99938 * 8 4 3 10 10 N 1.34776 * 120.00248 * 185.00280 * 8 4 3 11 11 C 1.47577 * 134.49713 * 180.02562 * 10 8 4 12 12 C 1.53943 * 86.11756 * 155.35503 * 11 10 8 13 13 N 1.46500 * 113.73878 * 137.95204 * 12 11 10 14 14 C 1.35310 * 125.86762 * 275.32238 * 13 12 11 15 15 C 1.35357 * 106.17329 * 180.12225 * 14 13 12 16 16 C 1.50699 * 126.74856 * 179.85748 * 15 14 13 17 17 N 1.46504 * 109.47547 * 94.71108 * 16 15 14 18 18 C 1.36934 * 120.00177 * 179.72476 * 17 16 15 19 19 H 1.08000 * 120.00139 * 0.26769 * 18 17 16 20 20 C 1.38815 * 119.99804 * 180.27245 * 18 17 16 21 21 N 1.31615 * 119.99845 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00209 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47245 * 89.99827 * 22 20 18 24 24 H 1.48494 * 109.47075 * 210.00205 * 22 20 18 25 25 H 1.48501 * 109.46991 * 329.99685 * 22 20 18 26 26 N 1.33763 * 106.49508 * 359.59063 * 15 14 13 27 27 N 1.28632 * 108.88873 * 0.26098 * 26 15 14 28 28 C 1.47585 * 134.48773 * 359.97438 * 10 8 4 29 29 H 1.09005 * 109.46733 * 300.00415 * 1 2 3 30 30 H 1.09009 * 109.46723 * 59.99436 * 1 2 3 31 31 H 1.08999 * 109.47277 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46737 * 239.99936 * 2 1 3 33 33 H 1.08998 * 109.46414 * 120.00203 * 2 1 3 34 34 H 1.08997 * 109.47113 * 185.29359 * 6 4 3 35 35 H 1.09005 * 109.47126 * 305.29115 * 6 4 3 36 36 H 1.09001 * 109.47258 * 174.89585 * 7 6 4 37 37 H 1.09004 * 109.47351 * 294.88862 * 7 6 4 38 38 H 1.08993 * 109.47385 * 54.89503 * 7 6 4 39 39 H 1.09005 * 113.76523 * 41.04940 * 11 10 8 40 40 H 1.08997 * 113.86754 * 269.67263 * 11 10 8 41 41 H 1.09003 * 113.74316 * 269.15359 * 12 11 10 42 42 H 1.08000 * 126.91809 * 359.97367 * 14 13 12 43 43 H 1.09000 * 109.47498 * 334.70491 * 16 15 14 44 44 H 1.09001 * 109.46849 * 214.70421 * 16 15 14 45 45 H 0.96999 * 119.99598 * 359.97438 * 17 16 15 46 46 H 0.96998 * 120.00449 * 180.02562 * 21 20 18 47 47 H 1.09003 * 113.76239 * 90.34738 * 28 10 8 48 48 H 1.08996 * 113.77009 * 318.94994 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4267 1.4615 -0.1099 5 1 3.8978 0.5945 0.3532 6 6 3.8922 2.7346 0.5995 7 6 3.6172 2.6123 2.0995 8 6 3.8143 1.5267 -1.5647 9 8 2.9552 1.5714 -2.4197 10 7 5.1155 1.5353 -1.9157 11 6 5.8400 1.5910 -3.2002 12 6 7.0089 2.1874 -2.3954 13 7 8.3193 1.6538 -2.7750 14 6 8.8768 0.5132 -2.3070 15 6 10.0810 0.4048 -2.9154 16 6 11.0909 -0.6977 -2.7261 17 7 10.9052 -1.7138 -3.7650 18 6 11.7181 -2.8152 -3.7985 19 1 12.4933 -2.9371 -3.0565 20 6 11.5457 -3.7752 -4.7863 21 7 12.3274 -4.8336 -4.8189 22 14 10.2045 -3.5648 -6.0693 23 1 10.7465 -2.8209 -7.2347 24 1 9.7292 -4.9002 -6.5120 25 1 9.0715 -2.8062 -5.4812 26 7 10.1958 1.4656 -3.7221 27 7 9.1356 2.1862 -3.6159 28 6 6.3882 1.4936 -1.1697 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.9612 2.8714 0.4360 35 1 3.3509 3.5921 0.1996 36 1 4.0300 3.4785 2.6165 37 1 2.5414 2.5667 2.2692 38 1 4.0841 1.7046 2.4817 39 1 5.4041 2.2832 -3.9207 40 1 6.0554 0.6119 -3.6279 41 1 6.9932 3.2759 -2.3397 42 1 8.4483 -0.1716 -1.5902 43 1 10.9533 -1.1519 -1.7448 44 1 12.0971 -0.2848 -2.7976 45 1 10.2087 -1.6045 -4.4312 46 1 12.2072 -5.5043 -5.5093 47 1 6.7643 0.4849 -0.9987 48 1 6.3901 2.1080 -0.2694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105178621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:47 Heat of formation + Delta-G solvation = 78.486467 kcal Electronic energy + Delta-G solvation = -29048.981450 eV Core-core repulsion = 24950.912417 eV Total energy + Delta-G solvation = -4098.069033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.32020 -41.08957 -39.27551 -37.60022 -35.26855 -34.59690 -33.59521 -31.96869 -31.30971 -30.42121 -30.03805 -27.62248 -26.91033 -26.13633 -24.16635 -23.27783 -22.53721 -22.40749 -21.26429 -20.85496 -19.79223 -18.42478 -17.94917 -17.61735 -17.37955 -16.46900 -16.32362 -15.79254 -15.36436 -15.10799 -14.84738 -14.58758 -14.55796 -14.08763 -14.06320 -14.01807 -13.47049 -13.16911 -13.08804 -12.87754 -12.87255 -12.74440 -12.64474 -12.35669 -12.23801 -11.96034 -11.83704 -11.64121 -11.59758 -11.32652 -11.15946 -10.93093 -10.87566 -10.63698 -10.20492 -10.08356 -9.76924 -9.61876 -9.44642 -9.11788 -8.93025 -7.26868 -5.78458 -3.14514 1.51824 1.70537 1.96022 2.40712 2.66625 3.06904 3.29172 3.37211 3.42475 3.46214 3.53292 3.99473 4.07594 4.24532 4.27745 4.42506 4.49674 4.58845 4.62001 4.63121 4.71225 4.75208 4.80910 4.93881 4.95062 4.99493 5.04586 5.14295 5.18150 5.25140 5.28150 5.38638 5.49801 5.50103 5.50208 5.61368 5.68467 5.71508 5.72968 6.16840 6.48992 6.49339 6.53090 6.61488 6.91659 7.54411 7.95542 8.40090 8.59693 9.17858 9.90431 10.09978 11.39562 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013099 B = 0.002433 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.031075 B =11506.750115 C =12481.909940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.082 3.918 5 H 0.089 0.911 6 C -0.118 4.118 7 C -0.149 4.149 8 C 0.519 3.481 9 O -0.513 6.513 10 N -0.643 5.643 11 C 0.103 3.897 12 C 0.114 3.886 13 N -0.295 5.295 14 C -0.046 4.046 15 C -0.006 4.006 16 C 0.237 3.763 17 N -0.750 5.750 18 C -0.245 4.245 19 H 0.094 0.906 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.251 5.251 27 N -0.088 5.088 28 C 0.094 3.906 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.147 0.853 42 H 0.190 0.810 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.106 0.894 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.705 15.927 16.659 31.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.021 3.979 5 H 0.106 0.894 6 C -0.156 4.156 7 C -0.207 4.207 8 C 0.308 3.692 9 O -0.386 6.386 10 N -0.383 5.383 11 C -0.020 4.020 12 C 0.010 3.990 13 N -0.089 5.089 14 C -0.196 4.196 15 C -0.144 4.144 16 C 0.108 3.892 17 N -0.396 5.396 18 C -0.374 4.374 19 H 0.112 0.888 20 C -0.188 4.188 21 N -0.580 5.580 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.207 1.207 26 N -0.118 5.118 27 N -0.066 5.066 28 C -0.030 4.030 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.165 0.835 42 H 0.207 0.793 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.123 0.877 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.156 17.126 15.380 31.949 hybrid contribution -1.041 -1.172 -0.408 1.619 sum -23.197 15.955 14.972 31.888 Atomic orbital electron populations 1.21718 0.93191 1.02453 1.03284 1.22622 0.96259 0.83201 1.00184 1.88017 1.18418 1.27169 1.93403 1.22011 0.84317 1.01020 0.90589 0.89367 1.21653 1.01369 0.95993 0.96575 1.21726 1.02873 1.02024 0.94042 1.21262 0.79810 0.75717 0.92400 1.90764 1.47673 1.47977 1.52162 1.49738 1.04046 1.74781 1.09726 1.23609 0.87072 1.02565 0.88776 1.23693 0.77463 1.01371 0.96481 1.47147 1.15059 1.17059 1.29678 1.23368 0.96681 0.92731 1.06831 1.22558 0.96591 0.97880 0.97343 1.18935 0.93131 0.84067 0.93050 1.42652 1.40675 1.23004 1.33248 1.19029 1.10807 0.95903 1.11670 0.88848 1.24633 0.98788 0.96770 0.98656 1.69691 1.40495 1.11644 1.36140 0.86559 0.82446 0.76774 0.82760 1.20916 1.21708 1.20673 1.75143 1.13941 1.04039 1.18687 1.78328 0.96997 1.21629 1.09676 1.23780 0.80755 1.02467 0.96023 0.91800 0.91553 0.90916 0.93105 0.93030 0.90081 0.90148 0.91956 0.91646 0.92543 0.87962 0.88348 0.83498 0.79274 0.93548 0.93341 0.80510 0.92992 0.87655 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.41 6.44 37.16 0.24 0.65 16 3 O -0.35 -3.25 9.17 -55.09 -0.51 -3.75 16 4 C 0.08 0.59 2.29 -27.89 -0.06 0.53 16 5 H 0.09 0.46 7.83 -51.93 -0.41 0.06 16 6 C -0.12 -0.60 5.59 -26.74 -0.15 -0.75 16 7 C -0.15 -0.63 9.76 37.16 0.36 -0.27 16 8 C 0.52 5.12 7.33 -10.99 -0.08 5.04 16 9 O -0.51 -7.38 17.24 -14.31 -0.25 -7.63 16 10 N -0.64 -4.86 3.58 -178.57 -0.64 -5.50 16 11 C 0.10 0.85 8.64 -2.98 -0.03 0.82 16 12 C 0.11 0.79 5.15 -70.17 -0.36 0.43 16 13 N -0.29 -3.34 3.54 -56.32 -0.20 -3.54 16 14 C -0.05 -0.56 10.72 -17.05 -0.18 -0.75 16 15 C -0.01 -0.10 6.62 -82.78 -0.55 -0.65 16 16 C 0.24 4.50 6.82 -5.19 -0.04 4.46 16 17 N -0.75 -17.86 5.40 -61.08 -0.33 -18.19 16 18 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 19 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 22 Si 0.88 22.50 27.74 -169.99 -4.71 17.79 16 23 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 26 N -0.25 -4.55 12.41 33.29 0.41 -4.14 16 27 N -0.09 -1.35 13.16 60.35 0.79 -0.56 16 28 C 0.09 0.43 7.60 -2.99 -0.02 0.41 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.44 8.11 -51.93 -0.42 0.02 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.26 5.52 -51.93 -0.29 -0.03 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 0.34 7.97 -51.93 -0.41 -0.07 16 38 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.15 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.19 1.60 6.72 -52.49 -0.35 1.25 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.36 8.74 5.52 -40.82 -0.23 8.51 16 46 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 47 H 0.11 0.42 6.31 -51.93 -0.33 0.09 16 48 H 0.11 0.21 6.03 -51.93 -0.31 -0.10 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -37.75 398.20 -6.80 -44.55 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.41 Total: 0.85 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.74 Total: 2.45 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.81 Total: -60.25 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.75 Total: -11.38 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.75 -6.80 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105178621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.037 kcal (2) G-P(sol) polarization free energy of solvation -37.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds