Wall clock time and date at job start Tue Mar 31 2020 20:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47179 * 2 1 4 4 C 1.53004 * 109.47149 * 239.99785 * 2 1 3 5 5 O 1.42904 * 109.47053 * 120.00038 * 2 1 3 6 6 C 1.42897 * 113.99960 * 60.00158 * 5 2 1 7 7 C 1.50700 * 109.47187 * 180.02562 * 6 5 2 8 8 O 1.21279 * 119.99887 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00040 * 180.02562 * 7 6 5 10 10 C 1.47066 * 136.05579 * 180.02562 * 9 7 6 11 11 C 1.53504 * 88.04678 * 207.05024 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.35316 * 125.86841 * 84.71602 * 12 11 10 14 14 C 1.35353 * 106.17181 * 179.90219 * 13 12 11 15 15 C 1.50700 * 126.74884 * 180.12613 * 14 13 12 16 16 N 1.46504 * 109.47174 * 95.24274 * 15 14 13 17 17 C 1.36933 * 120.00208 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99671 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00131 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47046 * 90.00106 * 21 19 17 23 23 H 1.48498 * 109.47160 * 209.99765 * 21 19 17 24 24 H 1.48493 * 109.47258 * 330.00201 * 21 19 17 25 25 N 1.33768 * 106.49641 * 0.35251 * 14 13 12 26 26 N 1.28630 * 108.88712 * 359.77204 * 25 14 13 27 27 C 1.47064 * 136.05760 * 359.93929 * 9 7 6 28 28 H 1.08997 * 109.47221 * 299.99889 * 1 2 3 29 29 H 1.09005 * 109.46971 * 60.00060 * 1 2 3 30 30 H 1.08999 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47208 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47193 * 300.00264 * 3 2 1 33 33 H 1.08997 * 109.47182 * 60.00449 * 3 2 1 34 34 H 1.08999 * 109.47413 * 300.00140 * 4 2 1 35 35 H 1.08998 * 109.46682 * 60.00067 * 4 2 1 36 36 H 1.09002 * 109.47138 * 179.97438 * 4 2 1 37 37 H 1.08999 * 109.47338 * 59.99904 * 6 5 2 38 38 H 1.09004 * 109.47249 * 299.99869 * 6 5 2 39 39 H 1.09002 * 113.46793 * 321.85996 * 10 9 7 40 40 H 1.08999 * 113.46805 * 92.24363 * 10 9 7 41 41 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 42 42 H 1.07997 * 126.91482 * 0.02562 * 13 12 11 43 43 H 1.08996 * 109.47190 * 215.24593 * 15 14 13 44 44 H 1.08998 * 109.47264 * 335.24837 * 15 14 13 45 45 H 0.97003 * 119.99825 * 0.02562 * 16 15 14 46 46 H 0.97001 * 120.00186 * 180.02562 * 20 19 17 47 47 H 1.08999 * 113.47096 * 267.69948 * 27 9 7 48 48 H 1.09005 * 113.46966 * 38.08340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0064 -0.6737 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 2.1410 -2.6444 2.5258 8 8 2.8310 -1.9779 3.2677 9 7 1.8726 -3.9300 2.8287 10 6 2.2137 -4.8539 3.9209 11 6 2.0507 -6.0095 2.9237 12 7 1.3819 -7.1900 3.4763 13 6 0.0444 -7.3790 3.5554 14 6 -0.1316 -8.5939 4.1256 15 6 -1.4460 -9.2657 4.4290 16 7 -1.7980 -10.1687 3.3303 17 6 -2.9586 -10.8933 3.3848 18 1 -3.6146 -10.7990 4.2375 19 6 -3.2919 -11.7493 2.3440 20 7 -2.4921 -11.8647 1.3051 21 14 -4.8755 -12.7373 2.4180 22 1 -5.9757 -11.9562 1.7978 23 1 -4.6976 -14.0136 1.6800 24 1 -5.2121 -13.0275 3.8348 25 7 1.0907 -9.0787 4.3714 26 7 1.9655 -8.2231 3.9750 27 6 1.1084 -5.0256 2.2135 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2493 35 1 1.6767 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2495 37 1 1.9492 -2.5916 0.4007 38 1 0.4958 -2.0778 1.2907 39 1 3.2339 -4.7364 4.2862 40 1 1.4773 -4.8670 4.7244 41 1 2.9548 -6.2467 2.3628 42 1 -0.7275 -6.6985 3.2275 43 1 -1.3577 -9.8359 5.3538 44 1 -2.2231 -8.5097 4.5411 45 1 -1.2086 -10.2537 2.5646 46 1 -2.7252 -12.4625 0.5776 47 1 0.0774 -5.0850 2.5622 48 1 1.1879 -5.0535 1.1267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105219574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:49 Heat of formation + Delta-G solvation = 56.251735 kcal Electronic energy + Delta-G solvation = -28457.175295 eV Core-core repulsion = 24358.142092 eV Total energy + Delta-G solvation = -4099.033203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.32363 -41.67189 -40.18242 -38.92017 -36.77857 -34.83193 -34.42838 -33.57575 -31.61135 -31.25392 -28.95055 -28.29664 -27.88469 -27.76555 -26.97575 -24.94976 -24.69043 -22.40267 -21.89315 -21.00214 -20.25973 -19.38591 -18.80199 -18.31149 -17.66298 -17.21416 -17.09225 -16.91749 -16.57999 -16.09825 -15.76875 -15.43551 -15.28617 -15.19557 -14.93956 -14.60094 -14.30896 -14.28350 -14.10119 -13.89748 -13.84026 -13.33921 -13.14229 -13.00885 -12.88102 -12.78319 -12.75310 -12.66025 -12.54368 -12.36801 -12.23826 -12.06937 -11.89022 -11.78632 -11.61302 -11.06471 -10.98263 -10.91845 -10.62881 -10.21699 -10.07201 -8.97824 -7.90238 -5.19865 0.57637 0.93258 1.29319 1.47704 1.53979 1.55019 1.63455 1.70554 2.61945 2.64537 2.69642 3.17131 3.40030 3.45365 3.54585 3.69773 3.88357 3.90025 3.96443 4.06160 4.11464 4.11742 4.18713 4.20117 4.27085 4.35679 4.37941 4.48294 4.53640 4.65737 4.66684 4.67734 4.81563 4.81597 4.90410 4.94623 4.94933 5.15627 5.17370 5.21344 5.32784 5.36349 5.55077 5.64607 6.14198 6.29863 6.34466 6.88111 7.37130 7.52571 8.08920 8.34306 9.33500 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.001986 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.296919 B =14098.139169 C =15502.434504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.098 3.902 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.387 6.387 6 C 0.048 3.952 7 C 0.549 3.451 8 O -0.567 6.567 9 N -0.642 5.642 10 C 0.100 3.900 11 C 0.105 3.895 12 N -0.275 5.275 13 C -0.014 4.014 14 C -0.036 4.036 15 C 0.234 3.766 16 N -0.738 5.738 17 C -0.241 4.241 18 H 0.084 0.916 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.976 3.024 22 H -0.282 1.282 23 H -0.300 1.300 24 H -0.270 1.270 25 N -0.297 5.297 26 N -0.108 5.108 27 C 0.103 3.897 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.164 0.836 42 H 0.234 0.766 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.372 0.628 46 H 0.250 0.750 47 H 0.124 0.876 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.874 27.900 -5.937 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.059 3.941 3 C -0.197 4.197 4 C -0.236 4.236 5 O -0.306 6.306 6 C -0.031 4.031 7 C 0.340 3.660 8 O -0.444 6.444 9 N -0.379 5.379 10 C -0.024 4.024 11 C 0.003 3.997 12 N -0.069 5.069 13 C -0.166 4.166 14 C -0.174 4.174 15 C 0.106 3.894 16 N -0.381 5.381 17 C -0.373 4.373 18 H 0.102 0.898 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.805 3.195 22 H -0.209 1.209 23 H -0.227 1.227 24 H -0.195 1.195 25 N -0.163 5.163 26 N -0.087 5.087 27 C -0.020 4.020 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.181 0.819 42 H 0.250 0.750 43 H 0.044 0.956 44 H 0.084 0.916 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.142 0.858 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.642 27.921 -5.041 29.659 hybrid contribution -1.298 -0.543 -0.443 1.475 sum 7.344 27.378 -5.483 28.871 Atomic orbital electron populations 1.22456 0.94272 1.03404 1.03520 1.21841 0.94274 0.93393 0.84573 1.21802 1.01610 0.93057 1.03183 1.22454 1.01900 1.01589 0.97682 1.88058 1.74982 1.22631 1.44966 1.22240 1.01059 0.85037 0.94727 1.20411 0.79562 0.78488 0.87551 1.90748 1.40151 1.60268 1.53227 1.49073 1.52861 1.09418 1.26573 1.23409 1.04121 0.83007 0.91878 1.23753 0.99576 0.79102 0.97311 1.47257 1.05483 1.14699 1.39456 1.23790 0.86894 1.00384 1.05483 1.22301 0.94884 0.95130 1.05101 1.18990 0.87764 0.91829 0.90789 1.42497 1.24308 1.50150 1.21138 1.19680 0.97835 1.16766 1.03007 0.89833 1.25597 1.02251 1.02101 0.96967 1.69839 1.39639 1.42586 1.10133 0.85096 0.79264 0.77485 0.77622 1.20906 1.22737 1.19452 1.75066 0.99802 1.22453 1.19024 1.78219 1.22316 0.93430 1.14691 1.23723 0.96936 0.78691 1.02641 0.92477 0.89661 0.91124 0.92600 0.88787 0.92642 0.91101 0.89676 0.92416 0.87275 0.87425 0.88934 0.88206 0.81877 0.75006 0.95567 0.91612 0.79706 0.94119 0.85814 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 8.25 71.98 0.59 -0.80 16 2 C 0.10 1.08 1.14 -10.79 -0.01 1.07 16 3 C -0.14 -1.49 8.84 71.98 0.64 -0.85 16 4 C -0.18 -1.36 8.25 71.98 0.59 -0.76 16 5 O -0.39 -6.92 9.52 -129.94 -1.24 -8.16 16 6 C 0.05 0.58 5.44 71.24 0.39 0.97 16 7 C 0.55 10.27 8.15 87.66 0.71 10.98 16 8 O -0.57 -16.86 17.27 16.01 0.28 -16.58 16 9 N -0.64 -8.27 3.69 -857.64 -3.17 -11.44 16 10 C 0.10 1.37 8.42 83.18 0.70 2.07 16 11 C 0.10 1.32 5.34 45.50 0.24 1.57 16 12 N -0.27 -6.13 3.56 -326.21 -1.16 -7.29 16 13 C -0.01 -0.34 10.72 83.49 0.89 0.56 16 14 C -0.04 -1.24 6.62 41.60 0.28 -0.96 16 15 C 0.23 9.19 6.82 85.63 0.58 9.77 16 16 N -0.74 -37.16 5.59 -347.18 -1.94 -39.11 16 17 C -0.24 -13.15 9.99 84.03 0.84 -12.32 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 19 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 20 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 21 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 N -0.30 -11.52 12.41 -48.60 -0.60 -12.12 16 26 N -0.11 -3.49 13.16 37.02 0.49 -3.00 16 27 C 0.10 0.67 7.77 83.23 0.65 1.32 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.07 0.40 6.54 -2.39 -0.02 0.38 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.38 6.54 -2.39 -0.02 0.36 16 35 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 0.74 6.42 -2.39 -0.02 0.73 16 38 H 0.11 0.78 6.42 -2.39 -0.02 0.76 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.23 3.15 6.78 -2.91 -0.02 3.13 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.37 20.47 7.66 -92.71 -0.71 19.76 16 46 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 47 H 0.12 0.45 6.38 -2.39 -0.02 0.43 16 48 H 0.14 0.14 8.14 -2.38 -0.02 0.12 16 Total: -1.00 -84.57 399.11 2.80 -81.77 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.27 Total: 18.80 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 7.57 Total: 8.71 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -6.10 Total: -131.84 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.96 Total: -24.74 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -84.57 2.80 -81.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105219574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.023 kcal (2) G-P(sol) polarization free energy of solvation -84.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds