Wall clock time and date at job start Tue Mar 31 2020 20:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47322 * 2 1 4 4 C 1.53005 * 109.47116 * 175.06518 * 3 2 1 5 5 H 1.08994 * 109.46876 * 305.29292 * 4 3 2 6 6 O 1.42900 * 109.46793 * 65.29519 * 4 3 2 7 7 C 1.42906 * 113.99307 * 209.39462 * 6 4 3 8 8 C 1.50705 * 109.46729 * 185.29142 * 4 3 2 9 9 O 1.21280 * 119.99894 * 244.99913 * 8 4 3 10 10 N 1.34775 * 119.99873 * 65.00275 * 8 4 3 11 11 C 1.47579 * 134.49229 * 179.97438 * 10 8 4 12 12 C 1.53943 * 86.11735 * 155.35765 * 11 10 8 13 13 N 1.46498 * 113.73809 * 137.95386 * 12 11 10 14 14 C 1.35311 * 125.87069 * 275.32502 * 13 12 11 15 15 C 1.35345 * 106.17938 * 180.11987 * 14 13 12 16 16 C 1.50702 * 126.75304 * 179.85330 * 15 14 13 17 17 N 1.46500 * 109.47027 * 94.71234 * 16 15 14 18 18 C 1.36941 * 119.99783 * 179.72125 * 17 16 15 19 19 H 1.08003 * 119.99837 * 0.28131 * 18 17 16 20 20 C 1.38813 * 119.99843 * 180.27579 * 18 17 16 21 21 N 1.31615 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99823 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47315 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47179 * 120.00145 * 22 20 18 25 25 H 1.48503 * 109.46974 * 239.99728 * 22 20 18 26 26 N 1.33768 * 106.49827 * 359.59325 * 15 14 13 27 27 N 1.28633 * 108.88309 * 0.25982 * 26 15 14 28 28 C 1.47577 * 134.49248 * 359.97438 * 10 8 4 29 29 H 1.09000 * 109.47164 * 60.00181 * 1 2 3 30 30 H 1.08998 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47200 * 300.00010 * 1 2 3 32 32 H 1.09000 * 109.47200 * 239.99990 * 2 1 3 33 33 H 1.09003 * 109.47288 * 120.00343 * 2 1 3 34 34 H 1.09002 * 109.46897 * 55.06555 * 3 2 1 35 35 H 1.08996 * 109.46959 * 295.06740 * 3 2 1 36 36 H 1.09000 * 109.46708 * 184.84242 * 7 6 4 37 37 H 1.08994 * 109.47116 * 304.84925 * 7 6 4 38 38 H 1.09000 * 109.46785 * 64.84948 * 7 6 4 39 39 H 1.09010 * 113.76831 * 41.05900 * 11 10 8 40 40 H 1.08997 * 113.77162 * 269.66250 * 11 10 8 41 41 H 1.09002 * 113.74169 * 269.15460 * 12 11 10 42 42 H 1.08003 * 126.91376 * 359.97266 * 14 13 12 43 43 H 1.08999 * 109.47173 * 334.70840 * 16 15 14 44 44 H 1.09008 * 109.47138 * 214.71222 * 16 15 14 45 45 H 0.96994 * 120.00397 * 0.02562 * 17 16 15 46 46 H 0.97001 * 120.00269 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.76969 * 90.34528 * 28 10 8 48 48 H 1.08996 * 113.77240 * 318.94273 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4442 0.1241 5 1 3.8583 0.8752 1.0062 6 8 4.1383 0.8468 -1.0406 7 6 5.3902 0.1991 -0.8051 8 6 4.0567 2.8628 0.2548 9 8 4.7495 3.3470 -0.6149 10 7 3.7264 3.5933 1.3382 11 6 4.0189 4.9686 1.7867 12 6 2.7223 4.8640 2.6099 13 7 2.8337 5.4236 3.9592 14 6 3.3093 4.7775 5.0488 15 6 3.2309 5.6582 6.0736 16 6 3.6380 5.4156 7.5041 17 7 5.0094 5.8887 7.7085 18 6 5.5957 5.7771 8.9410 19 1 5.0486 5.3363 9.7613 20 6 6.8931 6.2306 9.1361 21 7 7.5595 6.7682 8.1366 22 14 7.6930 6.0778 10.8172 23 1 6.7404 5.4425 11.7628 24 1 8.9151 5.2410 10.7097 25 1 8.0597 7.4278 11.3154 26 7 2.7264 6.7881 5.5657 27 7 2.5018 6.6166 4.3107 28 6 2.9271 3.3393 2.5525 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6063 1.9812 0.8425 35 1 1.7506 1.9302 -0.9308 36 1 5.8004 -0.1535 -1.7514 37 1 6.0841 0.9048 -0.3486 38 1 5.2406 -0.6481 -0.1358 39 1 3.9740 5.7098 0.9887 40 1 4.9199 5.0502 2.3946 41 1 1.8358 5.2098 2.0783 42 1 3.6754 3.7624 5.0926 43 1 3.5856 4.3487 7.7209 44 1 2.9645 5.9552 8.1701 45 1 5.5006 6.2849 6.9719 46 1 8.4663 7.0847 8.2728 47 1 3.5075 2.9423 3.3854 48 1 2.0106 2.7796 2.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105297089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:11 Heat of formation + Delta-G solvation = 73.778876 kcal Electronic energy + Delta-G solvation = -28982.381065 eV Core-core repulsion = 24884.107896 eV Total energy + Delta-G solvation = -4098.273169 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.17673 -41.01365 -39.17102 -37.47824 -35.35269 -35.02010 -33.55739 -31.90181 -31.03281 -29.99289 -29.05992 -27.16468 -26.71472 -25.93590 -25.12241 -23.58529 -22.86081 -21.74740 -21.15787 -20.73818 -19.64391 -18.22882 -17.72022 -17.43424 -17.06596 -16.46800 -16.13625 -15.82117 -15.40973 -15.11025 -14.84225 -14.60097 -14.51586 -14.10346 -13.87496 -13.74606 -13.61579 -13.36793 -13.25299 -12.98060 -12.76947 -12.65740 -12.52824 -12.12161 -11.89447 -11.82740 -11.61765 -11.56482 -11.32799 -11.10755 -11.02190 -10.91631 -10.84748 -10.52588 -10.09433 -9.97958 -9.77999 -9.72116 -9.36107 -8.95147 -8.90205 -6.94817 -5.76570 -3.06505 1.65318 1.81070 2.02971 2.51348 2.82606 3.20715 3.39199 3.43741 3.49328 3.51791 3.60325 4.06418 4.15025 4.28939 4.30881 4.48260 4.58072 4.60662 4.63758 4.67422 4.75907 4.89441 4.96352 5.00942 5.06268 5.08357 5.13140 5.16958 5.27652 5.31129 5.31969 5.36642 5.41540 5.58488 5.61135 5.69413 5.73091 5.82623 6.13378 6.32540 6.49920 6.59124 6.63009 6.72723 6.99505 7.61101 7.69262 8.40475 8.74273 9.52483 10.07639 10.43234 11.46148 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.002236 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.047627 B =12519.356719 C =13153.871365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.081 3.919 5 H 0.089 0.911 6 O -0.355 6.355 7 C 0.027 3.973 8 C 0.520 3.480 9 O -0.513 6.513 10 N -0.643 5.643 11 C 0.103 3.897 12 C 0.114 3.886 13 N -0.295 5.295 14 C -0.047 4.047 15 C 0.000 4.000 16 C 0.232 3.768 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.250 5.250 27 N -0.089 5.089 28 C 0.094 3.906 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.146 0.854 42 H 0.188 0.812 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.106 0.894 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.826 -16.905 -18.885 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.153 4.153 4 C 0.019 3.981 5 H 0.107 0.893 6 O -0.271 6.271 7 C -0.069 4.069 8 C 0.308 3.692 9 O -0.387 6.387 10 N -0.382 5.382 11 C -0.020 4.020 12 C 0.010 3.990 13 N -0.090 5.090 14 C -0.197 4.197 15 C -0.137 4.137 16 C 0.103 3.897 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.092 0.908 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.117 5.117 27 N -0.068 5.068 28 C -0.030 4.030 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.164 0.836 42 H 0.205 0.795 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.124 0.876 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.022 -15.474 -20.074 28.966 hybrid contribution 1.477 -0.920 1.162 2.093 sum -12.545 -16.394 -18.912 27.996 Atomic orbital electron populations 1.21775 0.95331 1.01992 1.01991 1.21488 0.96118 0.95437 1.02825 1.21769 0.90443 0.99087 1.03962 1.22058 0.95488 0.89689 0.90877 0.89319 1.88008 1.36362 1.71667 1.31106 1.22903 0.85298 0.95921 1.02781 1.21207 0.79848 0.88084 0.80033 1.90762 1.36975 1.71682 1.39259 1.49734 1.53471 1.15641 1.19395 1.23632 0.96882 0.84352 0.97120 1.23664 1.01709 0.94038 0.79546 1.47111 1.42635 1.10438 1.08800 1.23306 1.07720 1.02248 0.86395 1.22496 1.02373 0.89912 0.98937 1.18968 0.88504 0.97440 0.84823 1.42316 1.09592 1.73794 1.11391 1.19267 0.96038 1.33562 0.88217 0.90805 1.24768 0.97171 1.01362 0.97628 1.69686 1.11727 1.46312 1.30242 0.86092 0.79162 0.77245 0.83515 1.20444 1.21924 1.21826 1.75134 1.14418 1.22668 0.99519 1.78314 1.19748 0.99285 1.09425 1.23781 0.96870 0.94468 0.87904 0.92560 0.92444 0.92616 0.90931 0.91881 0.90003 0.90114 0.88987 0.93587 0.93661 0.87982 0.88145 0.83619 0.79467 0.94420 0.94237 0.78117 0.93530 0.87647 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.15 0.37 -0.28 16 2 C -0.12 -0.58 5.78 -26.73 -0.15 -0.73 16 3 C -0.12 -0.64 4.87 -26.73 -0.13 -0.77 16 4 C 0.08 0.61 2.29 -27.88 -0.06 0.55 16 5 H 0.09 0.49 7.83 -51.93 -0.41 0.09 16 6 O -0.35 -3.35 9.53 -55.09 -0.52 -3.88 16 7 C 0.03 0.20 10.79 101.05 1.09 1.29 16 8 C 0.52 5.39 7.33 -10.98 -0.08 5.31 16 9 O -0.51 -7.67 17.24 -14.30 -0.25 -7.92 16 10 N -0.64 -5.27 3.58 -178.55 -0.64 -5.90 16 11 C 0.10 0.93 8.63 -2.98 -0.03 0.91 16 12 C 0.11 0.88 5.15 -70.15 -0.36 0.52 16 13 N -0.30 -3.62 3.54 -56.30 -0.20 -3.82 16 14 C -0.05 -0.62 10.71 -17.05 -0.18 -0.80 16 15 C 0.00 0.01 6.61 -82.78 -0.55 -0.54 16 16 C 0.23 4.64 6.82 -5.19 -0.04 4.61 16 17 N -0.73 -18.49 5.59 -61.08 -0.34 -18.83 16 18 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 N -0.25 -4.83 12.41 33.29 0.41 -4.42 16 27 N -0.09 -1.46 13.17 60.35 0.79 -0.67 16 28 C 0.09 0.50 7.60 -2.98 -0.02 0.47 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.41 7.96 -51.93 -0.41 0.00 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.31 5.52 -51.93 -0.29 0.03 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.19 1.79 6.72 -52.48 -0.35 1.44 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 45 H 0.39 10.63 7.66 -40.82 -0.31 10.31 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.11 0.50 6.31 -51.93 -0.33 0.17 16 48 H 0.11 0.28 6.03 -51.93 -0.31 -0.04 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -37.28 400.95 -6.85 -44.12 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.45 Total: 2.45 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.39 Total: 3.27 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.75 Total: -61.33 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.77 Total: -11.80 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.28 -6.85 -44.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105297089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.900 kcal (2) G-P(sol) polarization free energy of solvation -37.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds