Wall clock time and date at job start Tue Mar 31 2020 20:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47322 * 2 1 4 4 C 1.53005 * 109.47116 * 175.06518 * 3 2 1 5 5 H 1.08994 * 109.46876 * 305.29292 * 4 3 2 6 6 O 1.42900 * 109.46793 * 65.29519 * 4 3 2 7 7 C 1.42906 * 113.99307 * 209.39462 * 6 4 3 8 8 C 1.50705 * 109.46729 * 185.29142 * 4 3 2 9 9 O 1.21280 * 119.99894 * 244.99913 * 8 4 3 10 10 N 1.34775 * 119.99873 * 65.00275 * 8 4 3 11 11 C 1.47579 * 134.49229 * 179.97438 * 10 8 4 12 12 C 1.53943 * 86.11735 * 155.35765 * 11 10 8 13 13 N 1.46498 * 113.73809 * 137.95386 * 12 11 10 14 14 C 1.35311 * 125.87069 * 275.32502 * 13 12 11 15 15 C 1.35345 * 106.17938 * 180.11987 * 14 13 12 16 16 C 1.50702 * 126.75304 * 179.85330 * 15 14 13 17 17 N 1.46500 * 109.47027 * 94.71234 * 16 15 14 18 18 C 1.36941 * 119.99783 * 179.72125 * 17 16 15 19 19 H 1.08003 * 119.99837 * 0.28131 * 18 17 16 20 20 C 1.38813 * 119.99843 * 180.27579 * 18 17 16 21 21 N 1.31615 * 120.00072 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99823 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47315 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47179 * 120.00145 * 22 20 18 25 25 H 1.48503 * 109.46974 * 239.99728 * 22 20 18 26 26 N 1.33768 * 106.49827 * 359.59325 * 15 14 13 27 27 N 1.28633 * 108.88309 * 0.25982 * 26 15 14 28 28 C 1.47577 * 134.49248 * 359.97438 * 10 8 4 29 29 H 1.09000 * 109.47164 * 60.00181 * 1 2 3 30 30 H 1.08998 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47200 * 300.00010 * 1 2 3 32 32 H 1.09000 * 109.47200 * 239.99990 * 2 1 3 33 33 H 1.09003 * 109.47288 * 120.00343 * 2 1 3 34 34 H 1.09002 * 109.46897 * 55.06555 * 3 2 1 35 35 H 1.08996 * 109.46959 * 295.06740 * 3 2 1 36 36 H 1.09000 * 109.46708 * 184.84242 * 7 6 4 37 37 H 1.08994 * 109.47116 * 304.84925 * 7 6 4 38 38 H 1.09000 * 109.46785 * 64.84948 * 7 6 4 39 39 H 1.09010 * 113.76831 * 41.05900 * 11 10 8 40 40 H 1.08997 * 113.77162 * 269.66250 * 11 10 8 41 41 H 1.09002 * 113.74169 * 269.15460 * 12 11 10 42 42 H 1.08003 * 126.91376 * 359.97266 * 14 13 12 43 43 H 1.08999 * 109.47173 * 334.70840 * 16 15 14 44 44 H 1.09008 * 109.47138 * 214.71222 * 16 15 14 45 45 H 0.96994 * 120.00397 * 0.02562 * 17 16 15 46 46 H 0.97001 * 120.00269 * 180.02562 * 21 20 18 47 47 H 1.09002 * 113.76969 * 90.34528 * 28 10 8 48 48 H 1.08996 * 113.77240 * 318.94273 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4442 0.1241 5 1 3.8583 0.8752 1.0062 6 8 4.1383 0.8468 -1.0406 7 6 5.3902 0.1991 -0.8051 8 6 4.0567 2.8628 0.2548 9 8 4.7495 3.3470 -0.6149 10 7 3.7264 3.5933 1.3382 11 6 4.0189 4.9686 1.7867 12 6 2.7223 4.8640 2.6099 13 7 2.8337 5.4236 3.9592 14 6 3.3093 4.7775 5.0488 15 6 3.2309 5.6582 6.0736 16 6 3.6380 5.4156 7.5041 17 7 5.0094 5.8887 7.7085 18 6 5.5957 5.7771 8.9410 19 1 5.0486 5.3363 9.7613 20 6 6.8931 6.2306 9.1361 21 7 7.5595 6.7682 8.1366 22 14 7.6930 6.0778 10.8172 23 1 6.7404 5.4425 11.7628 24 1 8.9151 5.2410 10.7097 25 1 8.0597 7.4278 11.3154 26 7 2.7264 6.7881 5.5657 27 7 2.5018 6.6166 4.3107 28 6 2.9271 3.3393 2.5525 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6063 1.9812 0.8425 35 1 1.7506 1.9302 -0.9308 36 1 5.8004 -0.1535 -1.7514 37 1 6.0841 0.9048 -0.3486 38 1 5.2406 -0.6481 -0.1358 39 1 3.9740 5.7098 0.9887 40 1 4.9199 5.0502 2.3946 41 1 1.8358 5.2098 2.0783 42 1 3.6754 3.7624 5.0926 43 1 3.5856 4.3487 7.7209 44 1 2.9645 5.9552 8.1701 45 1 5.5006 6.2849 6.9719 46 1 8.4663 7.0847 8.2728 47 1 3.5075 2.9423 3.3854 48 1 2.0106 2.7796 2.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105297089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:10 Heat of formation + Delta-G solvation = 46.506993 kcal Electronic energy + Delta-G solvation = -28983.563663 eV Core-core repulsion = 24884.107896 eV Total energy + Delta-G solvation = -4099.455767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.31461 -41.74324 -39.85499 -38.25034 -36.78924 -35.77219 -34.76379 -33.57680 -31.67179 -31.61835 -29.74054 -27.90452 -27.53822 -27.17558 -25.84698 -24.76122 -24.36464 -22.37361 -22.08123 -21.79579 -20.30582 -19.42239 -18.87535 -18.30288 -18.08548 -17.32242 -17.06978 -16.59486 -16.41385 -16.17218 -15.86853 -15.64200 -15.38294 -15.20149 -15.08067 -14.82993 -14.34035 -14.23799 -14.22062 -13.93512 -13.82513 -13.55025 -13.21144 -13.00119 -12.96103 -12.80185 -12.62799 -12.49157 -12.36525 -12.10941 -12.01987 -11.99781 -11.86320 -11.80702 -11.59388 -11.45770 -11.05649 -10.95575 -10.44552 -10.21232 -10.05975 -8.99753 -7.92228 -5.22029 0.57080 1.01186 1.28823 1.47357 1.51772 1.53689 1.62658 1.73924 2.60676 2.67326 2.73245 2.97011 3.36271 3.42427 3.55927 3.65493 3.77544 3.85231 3.95514 4.05885 4.11992 4.21539 4.25321 4.26493 4.32767 4.36165 4.38905 4.44898 4.50008 4.54550 4.65636 4.69089 4.77879 4.80749 4.90401 4.94425 5.02793 5.15744 5.21578 5.30212 5.37180 5.51938 5.53726 5.64457 5.94343 6.27840 6.31596 6.86625 7.34811 7.52759 8.07142 8.31683 9.31892 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.002236 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.047627 B =12519.356719 C =13153.871365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.110 4.110 4 C 0.082 3.918 5 H 0.117 0.883 6 O -0.378 6.378 7 C 0.024 3.976 8 C 0.516 3.484 9 O -0.572 6.572 10 N -0.638 5.638 11 C 0.094 3.906 12 C 0.112 3.888 13 N -0.277 5.277 14 C -0.015 4.015 15 C -0.035 4.035 16 C 0.234 3.766 17 N -0.740 5.740 18 C -0.238 4.238 19 H 0.086 0.914 20 C -0.080 4.080 21 N -0.974 5.974 22 Si 0.976 3.024 23 H -0.260 1.260 24 H -0.293 1.293 25 H -0.299 1.299 26 N -0.297 5.297 27 N -0.108 5.108 28 C 0.104 3.896 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.169 0.831 42 H 0.232 0.768 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.122 0.878 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 -19.785 -18.128 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.147 4.147 4 C 0.021 3.979 5 H 0.135 0.865 6 O -0.295 6.295 7 C -0.072 4.072 8 C 0.306 3.694 9 O -0.449 6.449 10 N -0.376 5.376 11 C -0.030 4.030 12 C 0.010 3.990 13 N -0.072 5.072 14 C -0.167 4.167 15 C -0.174 4.174 16 C 0.106 3.894 17 N -0.383 5.383 18 C -0.369 4.369 19 H 0.104 0.896 20 C -0.272 4.272 21 N -0.625 5.625 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.220 1.220 25 H -0.227 1.227 26 N -0.164 5.164 27 N -0.086 5.086 28 C -0.018 4.018 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.186 0.814 42 H 0.248 0.752 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.140 0.860 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.766 -18.379 -19.297 30.963 hybrid contribution 1.921 -0.052 0.824 2.091 sum -13.845 -18.431 -18.474 29.541 Atomic orbital electron populations 1.21778 0.94909 1.02220 1.02195 1.21452 0.96384 0.94727 1.02895 1.21799 0.88945 0.99859 1.04147 1.22290 0.96458 0.87791 0.91382 0.86548 1.87983 1.37005 1.71893 1.32650 1.23011 0.84423 0.96126 1.03633 1.21866 0.78918 0.89070 0.79524 1.90734 1.39736 1.73016 1.41448 1.49718 1.53027 1.15050 1.19777 1.23608 0.97083 0.85192 0.97162 1.24098 1.01702 0.95992 0.77196 1.47392 1.40460 1.09222 1.10083 1.23764 1.04798 1.03006 0.85090 1.22301 1.04963 0.91099 0.99001 1.19011 0.85393 0.98392 0.86577 1.42546 1.11605 1.73860 1.10256 1.19738 0.96064 1.31799 0.89320 0.89571 1.25626 0.98172 1.02134 1.01237 1.69857 1.11802 1.48385 1.32462 0.85024 0.78236 0.76630 0.79570 1.18353 1.22014 1.22689 1.75064 1.16125 1.24276 1.00948 1.78212 1.20816 1.01113 1.08469 1.24070 0.98221 0.92617 0.86859 0.93238 0.92257 0.91546 0.92339 0.90386 0.87629 0.91792 0.88491 0.95233 0.91149 0.88600 0.89625 0.81371 0.75160 0.91430 0.95379 0.79909 0.94205 0.85981 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 71.98 0.71 -0.15 16 2 C -0.12 -0.76 5.78 30.59 0.18 -0.58 16 3 C -0.11 -0.89 4.87 30.60 0.15 -0.75 16 4 C 0.08 1.05 2.29 29.85 0.07 1.12 16 5 H 0.12 0.83 7.83 -2.39 -0.02 0.81 16 6 O -0.38 -6.77 9.53 -129.99 -1.24 -8.01 16 7 C 0.02 0.33 10.79 113.37 1.22 1.55 16 8 C 0.52 10.04 7.33 87.66 0.64 10.68 16 9 O -0.57 -17.44 17.24 15.96 0.28 -17.16 16 10 N -0.64 -8.90 3.58 -837.20 -2.99 -11.89 16 11 C 0.09 1.57 8.63 86.48 0.75 2.32 16 12 C 0.11 1.38 5.15 46.75 0.24 1.62 16 13 N -0.28 -6.11 3.54 -332.04 -1.18 -7.29 16 14 C -0.02 -0.36 10.71 83.49 0.89 0.53 16 15 C -0.04 -1.22 6.61 41.60 0.28 -0.94 16 16 C 0.23 9.12 6.82 85.63 0.58 9.70 16 17 N -0.74 -37.60 5.59 -347.16 -1.94 -39.54 16 18 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 19 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 21 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 22 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 26 N -0.30 -11.49 12.41 -48.60 -0.60 -12.09 16 27 N -0.11 -3.44 13.17 37.02 0.49 -2.96 16 28 C 0.10 0.61 7.60 86.48 0.66 1.27 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.06 0.56 7.96 -2.39 -0.02 0.54 16 33 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.11 0.30 5.52 -2.39 -0.01 0.28 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.03 0.49 8.11 -2.39 -0.02 0.47 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.17 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.23 3.17 6.72 -2.91 -0.02 3.15 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.37 20.76 7.66 -92.71 -0.71 20.05 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.12 0.42 6.31 -2.39 -0.02 0.41 16 48 H 0.15 -0.21 6.03 -2.39 -0.01 -0.23 16 Total: -1.00 -85.55 400.95 3.06 -82.49 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.26 Total: 18.81 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 7.68 Total: 10.07 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -5.94 Total: -134.02 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.96 Total: -25.17 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -85.55 3.06 -82.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105297089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.995 kcal (2) G-P(sol) polarization free energy of solvation -85.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds