Wall clock time and date at job start Tue Mar 31 2020 20:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47480 * 2 1 4 4 C 1.42896 * 114.00216 * 177.27181 * 3 2 1 5 5 H 1.09002 * 109.47303 * 30.18054 * 4 3 2 6 6 C 1.53002 * 109.47083 * 150.17512 * 4 3 2 7 7 C 1.52998 * 109.47412 * 294.75040 * 6 4 3 8 8 C 1.50697 * 109.46952 * 270.17846 * 4 3 2 9 9 O 1.21281 * 120.00431 * 0.02562 * 8 4 3 10 10 N 1.34779 * 119.99971 * 179.97438 * 8 4 3 11 11 C 1.46494 * 120.00099 * 179.97438 * 10 8 4 12 12 C 1.50705 * 109.47110 * 179.97438 * 11 10 8 13 13 C 1.35350 * 126.74679 * 94.71579 * 12 11 10 14 14 N 1.35313 * 106.17246 * 179.85356 * 13 12 11 15 15 C 1.46505 * 125.87008 * 180.18844 * 14 13 12 16 16 C 1.53953 * 113.73950 * 14.03252 * 15 14 13 17 17 N 1.47811 * 86.03619 * 222.08631 * 16 15 14 18 18 C 1.36933 * 134.46007 * 204.64564 * 17 16 15 19 19 H 1.07994 * 120.00815 * 179.87077 * 18 17 16 20 20 C 1.38818 * 119.99518 * 359.86368 * 18 17 16 21 21 N 1.31612 * 120.00401 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47223 * 120.00028 * 22 20 18 25 25 H 1.48501 * 109.47294 * 240.00468 * 22 20 18 26 26 C 1.47582 * 91.05059 * 24.54839 * 17 16 15 27 27 N 1.28714 * 108.26666 * 0.41435 * 14 13 12 28 28 N 1.28634 * 110.17513 * 359.73791 * 27 14 13 29 29 H 1.09000 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47613 * 59.99613 * 1 2 3 31 31 H 1.09008 * 109.46816 * 299.99476 * 1 2 3 32 32 H 1.08999 * 109.47613 * 120.00387 * 2 1 3 33 33 H 1.09002 * 109.46474 * 240.00308 * 2 1 3 34 34 H 1.09004 * 109.47049 * 54.75044 * 6 4 3 35 35 H 1.08999 * 109.46966 * 174.74563 * 6 4 3 36 36 H 1.08998 * 109.47168 * 304.51746 * 7 6 4 37 37 H 1.09000 * 109.46944 * 64.51567 * 7 6 4 38 38 H 1.08999 * 109.46774 * 184.51422 * 7 6 4 39 39 H 0.97000 * 120.00016 * 0.02562 * 10 8 4 40 40 H 1.08997 * 109.47415 * 299.99992 * 11 10 8 41 41 H 1.09000 * 109.47239 * 60.00497 * 11 10 8 42 42 H 1.07998 * 126.91773 * 0.02562 * 13 12 11 43 43 H 1.08996 * 112.94758 * 145.62651 * 15 14 13 44 44 H 1.09004 * 113.76810 * 336.35099 * 16 15 14 45 45 H 1.09000 * 113.76725 * 107.74605 * 16 15 14 46 46 H 0.96994 * 120.00583 * 179.97438 * 21 20 18 47 47 H 1.08996 * 113.77369 * 221.14496 * 26 17 16 48 48 H 1.09006 * 113.86703 * 89.76911 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4295 1.4605 0.0621 5 1 3.8843 0.5957 -0.4209 6 6 3.8714 2.7369 -0.6565 7 6 3.5446 2.6224 -2.1468 8 6 3.8663 1.5185 1.5032 9 8 3.0404 1.4673 2.3899 10 7 5.1750 1.6262 1.8069 11 6 5.5996 1.6831 3.2078 12 6 7.1006 1.8012 3.2734 13 6 7.8192 2.9433 3.3794 14 7 9.1193 2.5694 3.4068 15 6 10.2694 3.4701 3.5178 16 6 9.8968 4.9011 3.9462 17 7 10.8679 5.3494 2.9260 18 6 11.6196 6.4802 2.7488 19 1 12.2747 6.5649 1.8944 20 6 11.5393 7.5179 3.6674 21 7 10.7412 7.4147 4.7088 22 14 12.5651 9.0603 3.4261 23 1 13.3739 8.9282 2.1876 24 1 11.6682 10.2379 3.3077 25 1 13.4685 9.2412 4.5908 26 6 10.7041 4.0885 2.1768 27 7 9.1723 1.2867 3.3136 28 7 7.9850 0.7984 3.2325 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 3.3449 3.5927 -0.2339 35 1 4.9454 2.8722 -0.5294 36 1 4.0060 1.7217 -2.5518 37 1 2.4639 2.5677 -2.2786 38 1 3.9309 3.4961 -2.6716 39 1 5.8357 1.6667 1.0979 40 1 5.1453 2.5484 3.6904 41 1 5.2844 0.7741 3.7202 42 1 7.4326 3.9502 3.4341 43 1 11.0917 3.0408 4.0901 44 1 8.8656 5.1728 3.7205 45 1 10.1880 5.1436 4.9682 46 1 10.6854 8.1396 5.3509 47 1 11.6386 3.6835 1.7886 48 1 9.9111 4.1193 1.4296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107140402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:21 Heat of formation + Delta-G solvation = 66.346465 kcal Electronic energy + Delta-G solvation = -28827.742159 eV Core-core repulsion = 24729.146696 eV Total energy + Delta-G solvation = -4098.595463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.11732 -40.24778 -38.42165 -37.86555 -35.27945 -34.24724 -33.39972 -32.01295 -31.28949 -31.10163 -28.22872 -27.91842 -25.99344 -25.26173 -24.41638 -23.14657 -22.36110 -21.97255 -21.16554 -20.59569 -19.66708 -18.08810 -17.44288 -17.30058 -16.73606 -16.25035 -15.71961 -15.52706 -15.22296 -15.11873 -14.86539 -14.53555 -14.38999 -14.11909 -14.01823 -13.44276 -13.14720 -12.96534 -12.75672 -12.70156 -12.37053 -12.23332 -12.14673 -12.08780 -11.88239 -11.63388 -11.45927 -11.38487 -11.21630 -11.07080 -11.01382 -10.98257 -10.63875 -10.55254 -10.23860 -9.93485 -9.65057 -9.53002 -9.22338 -9.12575 -9.04653 -7.29585 -6.08162 -3.43668 1.76901 2.35601 2.43699 2.59893 3.11468 3.23691 3.29639 3.32010 3.47428 4.18665 4.30834 4.42093 4.54169 4.59939 4.67717 4.70390 4.80741 4.88948 4.91749 4.96873 5.10917 5.11996 5.16585 5.17621 5.36799 5.37153 5.42931 5.48194 5.57061 5.64851 5.67308 5.71311 5.75914 5.87214 5.95595 6.00917 6.06719 6.11620 6.20827 6.25794 6.49629 6.76052 6.78474 6.98687 7.12967 7.32877 7.64344 8.04507 8.69145 8.72109 9.38407 10.15491 11.09123 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.002165 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.989325 B =12931.192676 C =13852.574119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.077 3.923 5 H 0.087 0.913 6 C -0.118 4.118 7 C -0.149 4.149 8 C 0.490 3.510 9 O -0.527 6.527 10 N -0.721 5.721 11 C 0.215 3.785 12 C -0.063 4.063 13 C -0.014 4.014 14 N -0.264 5.264 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.120 3.880 27 N -0.088 5.088 28 N -0.268 5.268 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.402 0.598 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.191 0.809 43 H 0.132 0.868 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 -12.096 -9.867 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.015 3.985 5 H 0.105 0.895 6 C -0.156 4.156 7 C -0.206 4.206 8 C 0.275 3.725 9 O -0.402 6.402 10 N -0.376 5.376 11 C 0.090 3.910 12 C -0.202 4.202 13 C -0.168 4.168 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.199 4.199 21 N -0.564 5.564 22 Si 0.749 3.251 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.208 0.792 43 H 0.150 0.850 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.671 -12.871 -9.182 20.901 hybrid contribution 0.494 1.712 -0.241 1.798 sum -13.177 -11.159 -9.423 19.671 Atomic orbital electron populations 1.21706 0.93482 1.02196 1.03209 1.22573 0.95970 0.83545 1.00049 1.87993 1.18355 1.26784 1.94027 1.22066 0.83885 1.00729 0.91796 0.89533 1.21617 1.01531 0.96111 0.96304 1.21719 1.02504 1.01872 0.94517 1.21405 0.82246 0.76507 0.92295 1.90718 1.51850 1.48507 1.49137 1.46123 1.07595 1.75077 1.08774 1.19279 0.85566 1.03546 0.82608 1.21717 0.96752 0.89834 1.11909 1.23513 0.84041 1.02018 1.07237 1.47921 1.07840 1.06388 1.43553 1.25302 0.85987 0.88829 1.02390 1.22751 0.93662 0.82358 0.97557 1.45674 1.46877 1.15537 1.24407 1.19047 1.17402 0.91428 1.08048 0.89421 1.24859 0.99398 0.98644 0.96972 1.69761 1.39943 1.33228 1.13505 0.85946 0.79236 0.82289 0.77652 1.20198 1.21415 1.21360 1.22927 0.99062 0.86660 0.92064 1.78274 1.17406 0.91628 1.19450 1.75017 0.94979 1.26812 1.16629 0.91150 0.91964 0.91553 0.92955 0.93426 0.90155 0.90012 0.92748 0.91819 0.92086 0.76347 0.89575 0.89812 0.79199 0.85024 0.94080 0.89015 0.93112 0.91971 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.49 6.40 37.16 0.24 0.73 16 3 O -0.35 -3.87 9.16 -55.14 -0.50 -4.37 16 4 C 0.08 0.72 2.52 -27.88 -0.07 0.65 16 5 H 0.09 0.63 7.82 -51.93 -0.41 0.22 16 6 C -0.12 -0.93 5.59 -26.73 -0.15 -1.08 16 7 C -0.15 -1.02 9.76 37.16 0.36 -0.65 16 8 C 0.49 5.81 7.18 -10.99 -0.08 5.73 16 9 O -0.53 -8.28 16.47 -14.35 -0.24 -8.51 16 10 N -0.72 -7.62 5.41 -61.48 -0.33 -7.95 16 11 C 0.21 2.54 6.23 -5.19 -0.03 2.51 16 12 C -0.06 -0.87 6.62 -82.78 -0.55 -1.41 16 13 C -0.01 -0.20 10.72 -17.05 -0.18 -0.38 16 14 N -0.26 -4.20 3.54 -56.29 -0.20 -4.39 16 15 C 0.08 1.29 5.14 -70.14 -0.36 0.93 16 16 C 0.16 3.29 6.90 -2.84 -0.02 3.27 16 17 N -0.60 -13.55 3.70 -177.87 -0.66 -14.21 16 18 C -0.23 -5.90 10.70 -15.06 -0.16 -6.06 16 19 H 0.09 2.15 7.83 -52.49 -0.41 1.74 16 20 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 21 N -0.92 -24.86 11.39 55.49 0.63 -24.22 16 22 Si 0.92 20.51 29.55 -169.99 -5.02 15.48 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.12 2.16 8.74 -2.97 -0.03 2.14 16 27 N -0.09 -1.50 13.17 60.35 0.79 -0.71 16 28 N -0.27 -4.33 12.41 33.29 0.41 -3.92 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.55 7.42 -51.93 -0.39 0.17 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.40 3.62 7.82 -40.82 -0.32 3.30 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.19 2.37 6.73 -52.49 -0.35 2.02 16 43 H 0.13 2.15 8.14 -51.93 -0.42 1.73 16 44 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 45 H 0.09 2.07 7.16 -51.93 -0.37 1.69 16 46 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -31.28 401.59 -7.42 -38.70 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.62 Total: 2.57 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.74 Total: 5.48 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.65 Total: -55.40 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.74 Total: -12.88 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.28 -7.42 -38.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107140402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.049 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds