Wall clock time and date at job start Tue Mar 31 2020 20:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46997 * 2 1 4 4 C 1.53002 * 109.47470 * 240.00120 * 2 1 3 5 5 O 1.42898 * 109.47230 * 119.99552 * 2 1 3 6 6 C 1.42900 * 113.99575 * 60.00316 * 5 2 1 7 7 C 1.50703 * 109.47361 * 180.02562 * 6 5 2 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53947 * 113.74330 * 14.03356 * 14 13 12 16 16 N 1.47807 * 86.03671 * 222.08595 * 15 14 13 17 17 C 1.36935 * 134.45249 * 204.64331 * 16 15 14 18 18 H 1.08003 * 120.00142 * 179.86840 * 17 16 15 19 19 C 1.38809 * 120.00476 * 359.86834 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47196 * 120.00235 * 21 19 17 24 24 H 1.48503 * 109.47010 * 239.99921 * 21 19 17 25 25 C 1.47576 * 91.05211 * 24.54811 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 1.09000 * 109.47263 * 300.00246 * 1 2 3 29 29 H 1.09001 * 109.46977 * 59.99978 * 1 2 3 30 30 H 1.08998 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46624 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47275 * 299.99839 * 3 2 1 33 33 H 1.09001 * 109.46905 * 60.00129 * 3 2 1 34 34 H 1.08998 * 109.46605 * 300.00073 * 4 2 1 35 35 H 1.09001 * 109.47101 * 59.99977 * 4 2 1 36 36 H 1.08993 * 109.47371 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.47421 * 59.99896 * 6 5 2 38 38 H 1.09002 * 109.47461 * 300.00159 * 6 5 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 40 40 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 41 41 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 42 42 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 43 43 H 1.09000 * 112.94374 * 145.62885 * 14 13 12 44 44 H 1.09002 * 113.76976 * 336.35198 * 15 14 13 45 45 H 1.08999 * 113.76656 * 107.74318 * 15 14 13 46 46 H 0.96996 * 120.00067 * 180.02562 * 20 19 17 47 47 H 1.09000 * 113.76645 * 221.14620 * 25 16 15 48 48 H 1.09000 * 113.87057 * 89.76846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6735 1.1668 6 6 1.5847 -2.0354 1.2645 7 6 2.1410 -2.6443 2.5258 8 8 2.8310 -1.9777 3.2677 9 7 1.8726 -3.9298 2.8288 10 6 2.4084 -4.5199 4.0580 11 6 1.9597 -5.9547 4.1635 12 6 2.6460 -7.0496 3.7606 13 7 1.8636 -8.1139 4.0539 14 6 2.1947 -9.5183 3.8008 15 6 3.6786 -9.7547 3.4661 16 7 3.1900 -10.6845 2.4262 17 6 3.7228 -11.7696 1.7830 18 1 3.1419 -12.2960 1.0401 19 6 5.0095 -12.1933 2.0859 20 7 5.7173 -11.5523 2.9918 21 14 5.7365 -13.6733 1.2080 22 1 4.7451 -14.2128 0.2432 23 1 6.9641 -13.2631 0.4799 24 1 6.0783 -14.7207 2.2036 25 6 1.8973 -9.9756 2.3613 26 7 0.7763 -7.6800 4.5890 27 7 0.8024 -6.3963 4.6685 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.9492 -2.5915 0.4008 38 1 0.4958 -2.0777 1.2907 39 1 1.3210 -4.4630 2.2352 40 1 3.4975 -4.4805 4.0352 41 1 2.0426 -3.9606 4.9191 42 1 3.6226 -7.0697 3.2999 43 1 1.8045 -10.1911 4.5644 44 1 4.1844 -8.8755 3.0668 45 1 4.2370 -10.2418 4.2655 46 1 6.6165 -11.8481 3.2032 47 1 1.0361 -10.6388 2.2800 48 1 1.8767 -9.1612 1.6370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107161898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:12 Heat of formation + Delta-G solvation = 73.043433 kcal Electronic energy + Delta-G solvation = -28476.380517 eV Core-core repulsion = 24378.075456 eV Total energy + Delta-G solvation = -4098.305061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.11133 -40.08812 -38.80294 -38.38804 -35.26729 -33.74924 -33.44945 -32.04443 -31.40413 -29.00904 -28.00072 -27.81557 -27.59044 -25.95554 -25.25154 -24.41089 -21.97814 -21.20691 -20.85139 -20.28701 -19.66192 -17.87349 -17.33526 -16.98826 -16.62542 -16.29052 -16.19801 -15.63462 -15.16792 -15.07217 -14.90539 -14.62173 -14.19388 -14.03332 -13.74821 -13.58597 -13.27314 -13.02403 -12.91421 -12.60601 -12.38460 -12.22596 -12.21710 -12.14764 -12.11692 -11.88004 -11.63240 -11.42026 -11.21516 -11.02631 -11.00576 -10.96203 -10.56122 -10.23986 -10.01281 -9.93394 -9.92109 -9.59526 -9.22071 -9.14461 -9.08450 -7.29612 -6.08265 -3.43816 1.76376 2.29568 2.48216 2.60255 2.91292 3.23513 3.29423 3.31843 3.76535 4.18603 4.31325 4.37847 4.43351 4.60103 4.65713 4.67738 4.70399 4.80643 4.87990 4.92255 5.10248 5.11749 5.16912 5.17151 5.32340 5.33568 5.36972 5.45816 5.46421 5.48979 5.57813 5.64527 5.72291 5.86352 5.88222 6.01007 6.06794 6.11984 6.20412 6.26149 6.49837 6.76163 6.81528 6.98948 7.12980 7.33483 7.64253 8.07084 8.69615 8.72051 9.38276 10.15396 11.09009 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.002003 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.099198 B =13972.730696 C =15052.522455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.350 6.350 6 C 0.039 3.961 7 C 0.516 3.484 8 O -0.521 6.521 9 N -0.723 5.723 10 C 0.217 3.783 11 C -0.063 4.063 12 C -0.014 4.014 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.163 3.837 16 N -0.598 5.598 17 C -0.232 4.232 18 H 0.088 0.912 19 C -0.001 4.001 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.120 3.880 26 N -0.088 5.088 27 N -0.267 5.267 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.403 0.597 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.191 0.809 43 H 0.132 0.868 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 19.255 -6.002 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.065 3.935 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.269 6.269 6 C -0.041 4.041 7 C 0.301 3.699 8 O -0.395 6.395 9 N -0.377 5.377 10 C 0.093 3.907 11 C -0.202 4.202 12 C -0.168 4.168 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.359 4.359 18 H 0.106 0.894 19 C -0.199 4.199 20 N -0.564 5.564 21 Si 0.749 3.251 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.007 4.007 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.237 0.763 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.208 0.792 43 H 0.150 0.850 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.161 19.143 -4.776 21.754 hybrid contribution 1.082 -1.154 -1.493 2.175 sum -8.079 17.990 -6.270 20.693 Atomic orbital electron populations 1.22463 0.95582 1.02645 1.03127 1.21603 0.93244 0.93477 0.85183 1.21743 1.02223 0.92913 1.02521 1.22465 1.02559 1.00984 0.97846 1.88102 1.74050 1.21757 1.42984 1.22211 0.99890 0.85499 0.96495 1.20207 0.80996 0.81576 0.87161 1.90739 1.37263 1.60741 1.50794 1.45923 1.54488 1.11982 1.25322 1.19272 0.98586 0.85625 0.87249 1.21712 0.94528 0.96131 1.07854 1.23518 1.01134 0.86157 1.05971 1.47921 1.11452 1.09638 1.36717 1.25295 1.02459 0.74450 1.00294 1.22751 0.87971 0.92667 0.92949 1.45674 1.11856 1.29783 1.45199 1.19046 0.97420 1.02131 1.17319 0.89431 1.24862 0.96376 0.99581 0.99073 1.69770 1.11150 1.41353 1.34166 0.85942 0.78962 0.81468 0.78732 1.20208 1.21414 1.21359 1.22926 0.91858 0.95031 0.90902 1.78279 1.07058 1.05536 1.15891 1.75023 1.18869 1.01817 1.17649 0.91465 0.91293 0.92121 0.91590 0.91035 0.91628 0.92100 0.91288 0.91411 0.90012 0.90068 0.76326 0.89491 0.89650 0.79182 0.85015 0.94074 0.89003 0.93113 0.91970 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 8.25 37.16 0.31 -0.82 16 2 C 0.10 0.81 1.14 -90.62 -0.10 0.70 16 3 C -0.14 -0.94 8.84 37.16 0.33 -0.61 16 4 C -0.18 -1.16 8.25 37.16 0.31 -0.85 16 5 O -0.35 -3.88 9.52 -55.14 -0.52 -4.41 16 6 C 0.04 0.35 5.62 36.01 0.20 0.56 16 7 C 0.52 6.21 7.91 -10.98 -0.09 6.12 16 8 O -0.52 -8.51 16.50 -14.36 -0.24 -8.75 16 9 N -0.72 -7.63 5.55 -61.47 -0.34 -7.97 16 10 C 0.22 2.57 6.23 -5.19 -0.03 2.54 16 11 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 12 C -0.01 -0.20 10.72 -17.04 -0.18 -0.38 16 13 N -0.26 -4.21 3.54 -56.31 -0.20 -4.41 16 14 C 0.08 1.30 5.14 -70.15 -0.36 0.94 16 15 C 0.16 3.29 6.90 -2.84 -0.02 3.27 16 16 N -0.60 -13.57 3.70 -177.90 -0.66 -14.22 16 17 C -0.23 -5.90 10.70 -15.06 -0.16 -6.06 16 18 H 0.09 2.15 7.83 -52.48 -0.41 1.74 16 19 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 20 N -0.92 -24.86 11.39 55.49 0.63 -24.23 16 21 Si 0.92 20.50 29.55 -169.99 -5.02 15.48 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 25 C 0.12 2.16 8.74 -2.97 -0.03 2.14 16 26 N -0.09 -1.51 13.17 60.35 0.79 -0.71 16 27 N -0.27 -4.33 12.41 33.29 0.41 -3.92 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 6.54 -51.93 -0.34 0.01 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.36 6.54 -51.93 -0.34 0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.58 6.42 -51.93 -0.33 0.25 16 38 H 0.08 0.58 6.42 -51.93 -0.33 0.24 16 39 H 0.40 3.54 8.46 -40.82 -0.35 3.19 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.19 2.36 6.74 -52.49 -0.35 2.01 16 43 H 0.13 2.16 8.14 -51.93 -0.42 1.73 16 44 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 45 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 46 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -31.97 395.63 -7.02 -38.99 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.36 Total: 2.22 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -0.47 Total: 5.98 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.64 Total: -55.47 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.76 Total: -13.16 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.97 -7.02 -38.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107161898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.030 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds