Wall clock time and date at job start Tue Mar 31 2020 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 N 1.46504 * 109.46908 * 120.00056 * 2 1 3 5 5 C 1.34817 * 126.59182 * 274.99815 * 4 2 1 6 6 C 1.36594 * 106.84011 * 179.97438 * 5 4 2 7 7 C 1.47528 * 125.77176 * 179.97438 * 6 5 4 8 8 O 1.21591 * 119.99805 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99954 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46984 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.55650 * 304.87668 * 11 10 9 13 13 C 1.53290 * 109.51251 * 184.74641 * 11 10 9 14 14 N 1.47166 * 108.41716 * 187.79804 * 13 11 10 15 15 C 1.36933 * 120.99120 * 230.54983 * 14 13 11 16 16 H 1.08000 * 120.00180 * 153.70650 * 15 14 13 17 17 C 1.38813 * 120.00094 * 333.70170 * 15 14 13 18 18 N 1.31620 * 119.99900 * 160.02568 * 17 15 14 19 19 Si 1.86798 * 119.99867 * 340.02586 * 17 15 14 20 20 H 1.48500 * 109.46937 * 91.85831 * 19 17 15 21 21 H 1.48502 * 109.47208 * 211.85857 * 19 17 15 22 22 H 1.48499 * 109.47296 * 331.85455 * 19 17 15 23 23 C 1.47155 * 118.02599 * 50.46688 * 14 13 11 24 24 C 1.53300 * 108.41547 * 309.53664 * 23 14 13 25 25 O 1.42958 * 109.22465 * 52.28134 * 24 23 14 26 26 N 1.34407 * 108.45682 * 0.24339 * 6 5 4 27 27 N 1.28760 * 109.52029 * 359.58807 * 26 6 5 28 28 H 1.08995 * 109.47434 * 300.00278 * 1 2 3 29 29 H 1.09005 * 109.46999 * 60.00566 * 1 2 3 30 30 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47434 * 239.99722 * 2 1 3 32 32 H 1.08998 * 109.47297 * 60.00074 * 3 2 1 33 33 H 1.08997 * 109.46874 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47059 * 299.99978 * 3 2 1 35 35 H 1.07997 * 126.58102 * 359.94537 * 5 4 2 36 36 H 0.97002 * 120.00162 * 359.97438 * 9 7 6 37 37 H 1.08997 * 109.46914 * 59.99984 * 10 9 7 38 38 H 1.08993 * 109.47356 * 299.99994 * 10 9 7 39 39 H 1.09005 * 109.47423 * 180.12984 * 12 11 10 40 40 H 1.09004 * 109.47263 * 300.12500 * 12 11 10 41 41 H 1.08996 * 109.47425 * 60.12348 * 12 11 10 42 42 H 1.09003 * 109.68354 * 307.50018 * 13 11 10 43 43 H 1.09005 * 109.68141 * 68.04879 * 13 11 10 44 44 H 0.96999 * 119.99776 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.68037 * 189.78791 * 23 14 13 46 46 H 1.09003 * 109.67969 * 69.27666 * 23 14 13 47 47 H 1.09000 * 109.50966 * 172.20794 * 24 23 14 48 48 H 1.09003 * 109.50501 * 292.30491 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1972 -0.1514 2.4188 6 6 2.6630 -1.1491 3.2271 7 6 3.0001 -1.0140 4.6570 8 8 2.8692 0.0591 5.2136 9 7 3.4530 -2.0800 5.3462 10 6 3.7883 -1.9456 6.7660 11 6 4.2736 -3.2928 7.3050 12 6 3.2174 -4.3650 7.0300 13 6 4.5117 -3.1842 8.8154 14 7 5.1527 -4.4264 9.2756 15 6 4.6580 -5.1198 10.3478 16 1 4.8280 -6.1833 10.4281 17 6 3.9380 -4.4558 11.3315 18 7 3.1408 -5.1307 12.1323 19 14 4.1005 -2.6043 11.5186 20 1 3.0567 -1.9310 10.7048 21 1 3.9302 -2.2342 12.9466 22 1 5.4440 -2.1758 11.0532 23 6 6.3400 -4.9023 8.5482 24 6 6.0128 -4.9272 7.0507 25 8 5.4979 -3.6521 6.6601 26 7 2.7681 -2.2733 2.4979 27 7 2.3888 -2.0396 1.2899 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 2.0089 0.8730 2.7042 36 1 3.5571 -2.9361 4.9022 37 1 2.9040 -1.6303 7.3198 38 1 4.5757 -1.2015 6.8846 39 1 3.5635 -5.3236 7.4166 40 1 2.2842 -4.0904 7.5219 41 1 3.0519 -4.4448 5.9556 42 1 5.1639 -2.3361 9.0242 43 1 3.5593 -3.0505 9.3285 44 1 2.6380 -4.6668 12.8199 45 1 6.5984 -5.9064 8.8843 46 1 7.1767 -4.2278 8.7300 47 1 6.9184 -5.1434 6.4838 48 1 5.2673 -5.6977 6.8538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108310308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:02 Heat of formation + Delta-G solvation = 47.440595 kcal Electronic energy + Delta-G solvation = -29916.766546 eV Core-core repulsion = 25817.351263 eV Total energy + Delta-G solvation = -4099.415283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.47295 -39.78864 -38.79671 -36.91024 -35.10494 -34.49384 -32.15578 -31.77218 -31.55827 -30.86900 -28.38236 -28.07160 -26.76349 -25.87885 -24.30780 -23.59064 -23.34298 -21.19239 -21.12937 -20.41762 -19.12891 -18.34356 -17.12223 -16.54536 -16.35428 -16.12269 -15.70202 -15.46600 -15.19171 -14.88999 -14.73465 -14.54315 -14.23436 -13.95464 -13.81801 -13.77103 -13.34690 -13.21566 -13.00908 -12.69059 -12.49394 -12.32871 -12.28151 -12.19169 -11.87165 -11.82253 -11.48788 -11.43394 -11.35195 -11.02709 -10.80957 -10.65877 -10.36250 -10.21198 -10.12271 -9.69383 -9.52658 -9.49144 -9.35739 -8.90998 -8.55548 -7.00598 -5.98580 -3.35456 0.90341 1.58190 1.67995 3.16870 3.28135 3.30174 3.48053 3.50558 3.78058 3.99684 4.09851 4.10113 4.29693 4.49120 4.50328 4.68272 4.77483 4.77792 4.83250 4.94778 4.97399 5.14994 5.20926 5.28396 5.35046 5.39447 5.43131 5.46138 5.59693 5.78245 5.82583 5.87095 5.96481 6.05024 6.09256 6.11189 6.27935 6.33716 6.48365 6.48931 6.55317 6.66151 6.81058 7.49777 7.68720 7.79909 7.85392 8.22044 8.27205 8.85122 9.65970 10.02547 11.16973 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002528 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.627072 B =11074.681892 C =11596.102519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.169 4.169 4 N -0.357 5.357 5 C 0.093 3.907 6 C -0.097 4.097 7 C 0.601 3.399 8 O -0.545 6.545 9 N -0.700 5.700 10 C 0.135 3.865 11 C 0.089 3.911 12 C -0.166 4.166 13 C 0.108 3.892 14 N -0.603 5.603 15 C -0.259 4.259 16 H 0.088 0.912 17 C 0.025 3.975 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.269 1.269 23 C 0.113 3.887 24 C 0.044 3.956 25 O -0.379 6.379 26 N -0.203 5.203 27 N -0.066 5.066 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.202 0.798 36 H 0.412 0.588 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.263 0.737 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.086 0.914 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 11.385 -25.932 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.228 4.228 4 N -0.143 5.143 5 C -0.064 4.064 6 C -0.237 4.237 7 C 0.384 3.616 8 O -0.422 6.422 9 N -0.351 5.351 10 C 0.011 3.989 11 C 0.048 3.952 12 C -0.224 4.224 13 C -0.018 4.018 14 N -0.328 5.328 15 C -0.387 4.387 16 H 0.106 0.894 17 C -0.174 4.174 18 N -0.549 5.549 19 Si 0.708 3.292 20 H -0.213 1.213 21 H -0.230 1.230 22 H -0.194 1.194 23 C -0.013 4.013 24 C -0.034 4.034 25 O -0.298 6.298 26 N -0.077 5.077 27 N -0.046 5.046 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.219 0.781 36 H 0.249 0.751 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.104 0.896 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.402 10.909 -26.261 28.639 hybrid contribution -0.185 1.441 0.643 1.588 sum -3.587 12.349 -25.617 28.664 Atomic orbital electron populations 1.22265 0.92444 1.03938 1.03874 1.21641 0.95713 0.93422 0.84996 1.22273 1.02742 0.93307 1.04440 1.50762 1.44632 1.09762 1.09144 1.23248 0.97533 1.01102 0.84523 1.21506 1.14290 0.90700 0.97158 1.16757 0.77316 0.84235 0.83264 1.90804 1.54978 1.26959 1.69446 1.45771 1.64984 1.13025 1.11334 1.21437 1.00721 0.96742 0.79983 1.22238 0.85172 0.93178 0.94654 1.22238 0.98971 1.00778 1.00363 1.21923 0.98524 0.90156 0.91223 1.44300 1.28415 1.26169 1.33909 1.18885 1.30372 0.92335 0.97140 0.89421 1.25244 0.98252 0.97530 0.96421 1.69820 1.27272 1.35766 1.22031 0.87049 0.78680 0.87405 0.76038 1.21326 1.22978 1.19433 1.21635 0.89590 0.99276 0.90806 1.23085 0.98140 0.85453 0.96744 1.87860 1.38896 1.36769 1.66272 1.74658 1.10950 1.23315 0.98744 1.81989 1.18280 0.91793 1.12553 0.91385 0.89663 0.91157 0.86781 0.90986 0.91047 0.89251 0.78146 0.75139 0.89732 0.90418 0.90219 0.91596 0.93140 0.94584 0.89907 0.92673 0.91041 0.95137 0.89638 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 9.52 37.15 0.35 -0.25 16 2 C 0.14 0.66 3.96 -67.93 -0.27 0.39 16 3 C -0.17 -0.46 8.85 37.16 0.33 -0.13 16 4 N -0.36 -3.13 3.54 -54.56 -0.19 -3.32 16 5 C 0.09 0.90 10.40 -16.83 -0.18 0.72 16 6 C -0.10 -1.27 6.99 -83.55 -0.58 -1.85 16 7 C 0.60 9.14 7.82 -12.47 -0.10 9.04 16 8 O -0.54 -9.43 16.86 5.29 0.09 -9.34 16 9 N -0.70 -10.65 5.19 -61.35 -0.32 -10.97 16 10 C 0.13 2.25 4.85 -4.04 -0.02 2.23 16 11 C 0.09 1.61 0.78 -90.47 -0.07 1.54 16 12 C -0.17 -2.88 7.86 37.15 0.29 -2.59 16 13 C 0.11 2.36 3.05 -3.53 -0.01 2.35 16 14 N -0.60 -14.11 2.35 -171.81 -0.40 -14.51 16 15 C -0.26 -7.08 10.10 -15.06 -0.15 -7.24 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.02 0.71 5.26 -17.43 -0.09 0.61 16 18 N -0.91 -27.42 13.97 55.49 0.78 -26.64 16 19 Si 0.88 22.28 24.29 -169.99 -4.13 18.15 16 20 H -0.29 -6.94 6.58 56.52 0.37 -6.57 16 21 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 22 H -0.27 -6.78 6.55 56.52 0.37 -6.41 16 23 C 0.11 2.20 6.73 -3.53 -0.02 2.17 16 24 C 0.04 0.73 6.60 37.31 0.25 0.97 16 25 O -0.38 -6.78 10.17 -35.23 -0.36 -7.14 16 26 N -0.20 -2.78 12.04 32.85 0.40 -2.39 16 27 N -0.07 -0.81 13.78 60.35 0.83 0.02 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.18 7.23 -51.93 -0.38 -0.19 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.20 1.37 7.34 -52.49 -0.39 0.99 16 36 H 0.41 6.02 6.69 -40.82 -0.27 5.74 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.52 6.12 -51.93 -0.32 1.20 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 42 H 0.04 0.81 6.86 -51.93 -0.36 0.45 16 43 H 0.08 1.95 4.60 -51.93 -0.24 1.71 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.07 1.34 7.96 -51.93 -0.41 0.92 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.05 0.90 6.26 -51.93 -0.32 0.57 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -33.94 380.78 -5.14 -39.08 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.30 Total: 3.34 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -0.27 Total: 7.98 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 1.09 Total: -57.81 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.27 Total: -16.48 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.13 Total: 18.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.94 -5.14 -39.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108310308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.524 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds