Wall clock time and date at job start Tue Mar 31 2020 20:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 N 1.46504 * 109.46908 * 120.00056 * 2 1 3 5 5 C 1.34817 * 126.59182 * 274.99815 * 4 2 1 6 6 C 1.36594 * 106.84011 * 179.97438 * 5 4 2 7 7 C 1.47528 * 125.77176 * 179.97438 * 6 5 4 8 8 O 1.21591 * 119.99805 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99954 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46984 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.55650 * 304.87668 * 11 10 9 13 13 C 1.53290 * 109.51251 * 184.74641 * 11 10 9 14 14 N 1.47166 * 108.41716 * 187.79804 * 13 11 10 15 15 C 1.36933 * 120.99120 * 230.54983 * 14 13 11 16 16 H 1.08000 * 120.00180 * 153.70650 * 15 14 13 17 17 C 1.38813 * 120.00094 * 333.70170 * 15 14 13 18 18 N 1.31620 * 119.99900 * 160.02568 * 17 15 14 19 19 Si 1.86798 * 119.99867 * 340.02586 * 17 15 14 20 20 H 1.48500 * 109.46937 * 91.85831 * 19 17 15 21 21 H 1.48502 * 109.47208 * 211.85857 * 19 17 15 22 22 H 1.48499 * 109.47296 * 331.85455 * 19 17 15 23 23 C 1.47155 * 118.02599 * 50.46688 * 14 13 11 24 24 C 1.53300 * 108.41547 * 309.53664 * 23 14 13 25 25 O 1.42958 * 109.22465 * 52.28134 * 24 23 14 26 26 N 1.34407 * 108.45682 * 0.24339 * 6 5 4 27 27 N 1.28760 * 109.52029 * 359.58807 * 26 6 5 28 28 H 1.08995 * 109.47434 * 300.00278 * 1 2 3 29 29 H 1.09005 * 109.46999 * 60.00566 * 1 2 3 30 30 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47434 * 239.99722 * 2 1 3 32 32 H 1.08998 * 109.47297 * 60.00074 * 3 2 1 33 33 H 1.08997 * 109.46874 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47059 * 299.99978 * 3 2 1 35 35 H 1.07997 * 126.58102 * 359.94537 * 5 4 2 36 36 H 0.97002 * 120.00162 * 359.97438 * 9 7 6 37 37 H 1.08997 * 109.46914 * 59.99984 * 10 9 7 38 38 H 1.08993 * 109.47356 * 299.99994 * 10 9 7 39 39 H 1.09005 * 109.47423 * 180.12984 * 12 11 10 40 40 H 1.09004 * 109.47263 * 300.12500 * 12 11 10 41 41 H 1.08996 * 109.47425 * 60.12348 * 12 11 10 42 42 H 1.09003 * 109.68354 * 307.50018 * 13 11 10 43 43 H 1.09005 * 109.68141 * 68.04879 * 13 11 10 44 44 H 0.96999 * 119.99776 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.68037 * 189.78791 * 23 14 13 46 46 H 1.09003 * 109.67969 * 69.27666 * 23 14 13 47 47 H 1.09000 * 109.50966 * 172.20794 * 24 23 14 48 48 H 1.09003 * 109.50501 * 292.30491 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1972 -0.1514 2.4188 6 6 2.6630 -1.1491 3.2271 7 6 3.0001 -1.0140 4.6570 8 8 2.8692 0.0591 5.2136 9 7 3.4530 -2.0800 5.3462 10 6 3.7883 -1.9456 6.7660 11 6 4.2736 -3.2928 7.3050 12 6 3.2174 -4.3650 7.0300 13 6 4.5117 -3.1842 8.8154 14 7 5.1527 -4.4264 9.2756 15 6 4.6580 -5.1198 10.3478 16 1 4.8280 -6.1833 10.4281 17 6 3.9380 -4.4558 11.3315 18 7 3.1408 -5.1307 12.1323 19 14 4.1005 -2.6043 11.5186 20 1 3.0567 -1.9310 10.7048 21 1 3.9302 -2.2342 12.9466 22 1 5.4440 -2.1758 11.0532 23 6 6.3400 -4.9023 8.5482 24 6 6.0128 -4.9272 7.0507 25 8 5.4979 -3.6521 6.6601 26 7 2.7681 -2.2733 2.4979 27 7 2.3888 -2.0396 1.2899 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 2.0089 0.8730 2.7042 36 1 3.5571 -2.9361 4.9022 37 1 2.9040 -1.6303 7.3198 38 1 4.5757 -1.2015 6.8846 39 1 3.5635 -5.3236 7.4166 40 1 2.2842 -4.0904 7.5219 41 1 3.0519 -4.4448 5.9556 42 1 5.1639 -2.3361 9.0242 43 1 3.5593 -3.0505 9.3285 44 1 2.6380 -4.6668 12.8199 45 1 6.5984 -5.9064 8.8843 46 1 7.1767 -4.2278 8.7300 47 1 6.9184 -5.1434 6.4838 48 1 5.2673 -5.6977 6.8538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108310308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:01 Heat of formation + Delta-G solvation = 21.562379 kcal Electronic energy + Delta-G solvation = -29917.888709 eV Core-core repulsion = 25817.351263 eV Total energy + Delta-G solvation = -4100.537447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.30475 -41.18040 -40.11704 -37.42832 -36.69596 -36.03044 -33.63394 -33.41737 -32.51254 -31.80254 -29.96955 -28.34137 -28.17925 -27.49002 -25.30964 -25.04258 -24.41984 -22.71777 -21.87485 -21.43148 -20.66493 -19.30953 -18.98891 -17.73654 -17.39781 -17.20408 -17.05901 -16.82791 -16.21695 -16.00480 -15.84713 -15.72068 -15.57514 -15.50379 -15.30386 -14.75924 -14.36630 -14.23671 -14.00132 -13.87744 -13.59750 -13.51149 -13.32750 -13.19405 -13.07328 -13.03352 -12.69982 -12.54496 -12.39449 -12.34443 -12.21624 -12.06501 -11.99411 -11.61755 -11.38986 -11.34110 -11.19292 -11.04736 -10.48794 -10.46763 -10.10272 -8.94082 -8.18602 -5.51067 0.12723 0.57892 1.05069 1.27103 1.39712 1.46995 2.01997 2.19220 2.38202 2.67549 2.98762 3.14209 3.23885 3.33014 3.69131 3.77718 3.79627 3.84894 3.90279 3.92762 4.00576 4.21848 4.30065 4.41035 4.44837 4.52198 4.53268 4.60616 4.61702 4.63721 4.66992 4.71274 4.77097 4.82376 4.89063 4.90729 5.04552 5.12903 5.16213 5.20670 5.26338 5.33994 5.49365 5.79352 6.09641 6.24259 6.36039 6.82396 6.86989 7.06935 7.55159 7.96589 9.00656 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002528 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.627072 B =11074.681892 C =11596.102519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.166 4.166 4 N -0.342 5.342 5 C 0.111 3.889 6 C -0.123 4.123 7 C 0.603 3.397 8 O -0.569 6.569 9 N -0.697 5.697 10 C 0.141 3.859 11 C 0.100 3.900 12 C -0.159 4.159 13 C 0.104 3.896 14 N -0.616 5.616 15 C -0.242 4.242 16 H 0.061 0.939 17 C -0.029 4.029 18 N -0.952 5.952 19 Si 0.933 3.067 20 H -0.271 1.271 21 H -0.310 1.310 22 H -0.265 1.265 23 C 0.106 3.894 24 C 0.049 3.951 25 O -0.378 6.378 26 N -0.225 5.225 27 N -0.088 5.088 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.231 0.769 36 H 0.415 0.585 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.262 0.738 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.123 0.877 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 13.449 -29.062 32.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 C -0.224 4.224 4 N -0.127 5.127 5 C -0.048 4.048 6 C -0.263 4.263 7 C 0.389 3.611 8 O -0.448 6.448 9 N -0.348 5.348 10 C 0.017 3.983 11 C 0.059 3.941 12 C -0.217 4.217 13 C -0.022 4.022 14 N -0.341 5.341 15 C -0.371 4.371 16 H 0.078 0.922 17 C -0.224 4.224 18 N -0.598 5.598 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.239 1.239 22 H -0.190 1.190 23 C -0.019 4.019 24 C -0.028 4.028 25 O -0.297 6.297 26 N -0.099 5.099 27 N -0.067 5.067 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.247 0.753 36 H 0.253 0.747 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.141 0.859 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.280 12.971 -29.475 32.369 hybrid contribution -0.196 0.770 1.472 1.672 sum -3.475 13.741 -28.003 31.386 Atomic orbital electron populations 1.22269 0.91416 1.03246 1.05184 1.22129 0.96462 0.94363 0.83613 1.22306 1.02251 0.91846 1.05976 1.51116 1.42905 1.08729 1.09999 1.23642 0.95421 1.01564 0.84122 1.21359 1.16640 0.91857 0.96430 1.16973 0.76497 0.83618 0.84043 1.90783 1.56086 1.27711 1.70230 1.45668 1.65134 1.13397 1.10633 1.21250 1.00554 0.95544 0.80957 1.21991 0.85677 0.94259 0.92166 1.22161 0.98279 0.99428 1.01805 1.21930 0.97353 0.89264 0.93697 1.44397 1.29966 1.26373 1.33376 1.18821 1.28891 0.91521 0.97913 0.92153 1.25784 0.98683 1.01226 0.96754 1.69934 1.29106 1.37348 1.23415 0.86144 0.79089 0.83083 0.75463 1.19738 1.23879 1.19003 1.21858 0.88244 0.99389 0.92360 1.23152 0.99748 0.85007 0.94918 1.87881 1.38608 1.37398 1.65829 1.74622 1.11819 1.24082 0.99336 1.81901 1.19028 0.93738 1.12066 0.91488 0.86948 0.92820 0.85928 0.90451 0.91804 0.86760 0.75286 0.74746 0.89902 0.90648 0.92023 0.92248 0.90697 0.94762 0.91777 0.92905 0.90739 0.94600 0.85924 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 9.52 71.98 0.69 -0.06 16 2 C 0.13 0.86 3.96 44.99 0.18 1.04 16 3 C -0.17 -0.34 8.85 71.98 0.64 0.30 16 4 N -0.34 -5.29 3.54 -326.54 -1.16 -6.45 16 5 C 0.11 1.91 10.40 83.85 0.87 2.78 16 6 C -0.12 -3.05 6.99 40.82 0.29 -2.76 16 7 C 0.60 17.66 7.82 86.69 0.68 18.33 16 8 O -0.57 -19.02 16.86 -4.00 -0.07 -19.08 16 9 N -0.70 -20.34 5.19 -466.29 -2.42 -22.76 16 10 C 0.14 4.55 4.85 86.38 0.42 4.96 16 11 C 0.10 3.52 0.78 -10.70 -0.01 3.51 16 12 C -0.16 -5.38 7.86 71.98 0.57 -4.81 16 13 C 0.10 4.45 3.05 86.35 0.26 4.71 16 14 N -0.62 -28.61 2.35 -697.49 -1.64 -30.26 16 15 C -0.24 -13.46 10.10 84.03 0.85 -12.61 16 16 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 17 C -0.03 -1.70 5.26 84.86 0.45 -1.25 16 18 N -0.95 -59.30 13.97 21.65 0.30 -59.00 16 19 Si 0.93 46.66 24.29 68.60 1.67 48.33 16 20 H -0.27 -12.75 6.58 99.48 0.65 -12.09 16 21 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 22 H -0.27 -12.93 6.55 99.48 0.65 -12.27 16 23 C 0.11 4.00 6.73 86.35 0.58 4.58 16 24 C 0.05 1.52 6.60 72.08 0.48 1.99 16 25 O -0.38 -12.70 10.17 -148.98 -1.52 -14.21 16 26 N -0.23 -5.97 12.04 -49.99 -0.60 -6.57 16 27 N -0.09 -2.03 13.78 37.02 0.51 -1.52 16 28 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.11 7.23 -2.39 -0.02 0.09 16 33 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.23 2.43 7.34 -2.91 -0.02 2.41 16 36 H 0.41 11.53 6.69 -92.71 -0.62 10.91 16 37 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.31 6.12 -2.38 -0.01 2.30 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.07 2.14 6.59 -2.39 -0.02 2.13 16 42 H 0.03 1.49 6.86 -2.39 -0.02 1.48 16 43 H 0.06 2.99 4.60 -2.38 -0.01 2.98 16 44 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.12 2.94 8.14 -2.39 -0.02 2.93 16 48 H 0.06 1.75 6.26 -2.39 -0.01 1.73 16 Total: -1.00 -74.76 380.78 2.26 -72.51 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.25 Total: 18.31 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 6.93 Total: 20.70 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -5.01 Total: -126.55 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.58 Total: -33.30 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.67 Total: 48.33 kcal Total: -74.76 2.26 -72.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108310308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.069 kcal (2) G-P(sol) polarization free energy of solvation -74.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds