Wall clock time and date at job start Tue Mar 31 2020 20:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 N 1.46504 * 109.46952 * 179.97438 * 3 2 1 5 5 C 1.34812 * 126.58937 * 125.00182 * 4 3 2 6 6 C 1.36597 * 106.83873 * 180.02562 * 5 4 3 7 7 C 1.47526 * 125.77097 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99836 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99657 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99647 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.51558 * 60.10545 * 11 10 9 13 13 C 1.53297 * 109.55051 * 180.22727 * 11 10 9 14 14 N 1.47161 * 108.38409 * 172.24986 * 13 11 10 15 15 C 1.36932 * 120.97818 * 129.48616 * 14 13 11 16 16 H 1.08003 * 119.99805 * 206.21534 * 15 14 13 17 17 C 1.38816 * 120.00222 * 26.21787 * 15 14 13 18 18 N 1.31615 * 119.99874 * 16.92074 * 17 15 14 19 19 Si 1.86802 * 119.99757 * 196.91979 * 17 15 14 20 20 H 1.48499 * 109.47015 * 94.61787 * 19 17 15 21 21 H 1.48495 * 109.47062 * 214.62143 * 19 17 15 22 22 H 1.48501 * 109.47048 * 334.61927 * 19 17 15 23 23 C 1.47144 * 118.03546 * 309.46881 * 14 13 11 24 24 C 1.53295 * 108.38791 * 50.53058 * 23 14 13 25 25 O 1.42953 * 109.51548 * 299.99838 * 11 10 9 26 26 N 1.34404 * 108.45657 * 0.23777 * 6 5 4 27 27 N 1.28763 * 109.52504 * 359.59292 * 26 6 5 28 28 H 1.09007 * 109.46757 * 60.00080 * 1 2 3 29 29 H 1.08998 * 109.47870 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47241 * 300.00093 * 1 2 3 31 31 H 1.09004 * 109.46908 * 240.00029 * 2 1 3 32 32 H 1.09000 * 109.46696 * 120.00298 * 2 1 3 33 33 H 1.09004 * 109.47068 * 60.00127 * 3 2 1 34 34 H 1.08994 * 109.47116 * 299.99624 * 3 2 1 35 35 H 1.07993 * 126.58344 * 0.02562 * 5 4 3 36 36 H 0.97002 * 120.00095 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.47075 * 60.00158 * 10 9 7 38 38 H 1.08999 * 109.47425 * 299.99896 * 10 9 7 39 39 H 1.09005 * 109.46772 * 299.89548 * 12 11 10 40 40 H 1.08998 * 109.47452 * 59.89553 * 12 11 10 41 41 H 1.08997 * 109.47406 * 179.89718 * 12 11 10 42 42 H 1.08997 * 109.68565 * 291.97452 * 13 11 10 43 43 H 1.08997 * 109.68473 * 52.49385 * 13 11 10 44 44 H 0.97006 * 119.99439 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.68191 * 290.80778 * 23 14 13 46 46 H 1.08994 * 109.68285 * 170.25684 * 23 14 13 47 47 H 1.09004 * 109.50951 * 67.62473 * 24 23 14 48 48 H 1.08997 * 109.51466 * 187.72498 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.3091 2.0630 -0.8858 6 6 5.5945 1.7977 -0.5074 7 6 6.8110 2.2760 -1.1915 8 8 6.7165 2.9706 -2.1849 9 7 8.0270 1.9428 -0.7152 10 6 9.2349 2.4172 -1.3949 11 6 10.4716 1.9004 -0.6569 12 6 10.4608 0.3705 -0.6505 13 6 11.7369 2.4005 -1.3633 14 7 12.9008 2.0496 -0.5340 15 6 13.9820 1.4053 -1.0734 16 1 14.6117 0.7903 -0.4475 17 6 14.2687 1.5426 -2.4247 18 7 13.7309 2.5257 -3.1150 19 14 15.4179 0.3320 -3.2633 20 1 14.6212 -0.7494 -3.8967 21 1 16.2083 1.0386 -4.3030 22 1 16.3379 -0.2558 -2.2566 23 6 12.8687 2.4120 0.8918 24 6 11.5483 1.9114 1.4883 25 8 10.4615 2.3836 0.6885 26 7 5.5637 1.0226 0.5901 27 7 4.3405 0.7963 0.9228 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9969 2.6562 -1.7325 36 1 8.1023 1.3883 0.0771 37 1 9.2441 3.5071 -1.4010 38 1 9.2436 2.0481 -2.4204 39 1 9.5631 0.0156 -0.1442 40 1 10.4686 0.0028 -1.6766 41 1 11.3429 0.0031 -0.1262 42 1 11.8248 1.9242 -2.3397 43 1 11.6856 3.4824 -1.4859 44 1 13.9310 2.6213 -4.0593 45 1 12.9317 3.4951 0.9968 46 1 13.7060 1.9433 1.4086 47 1 11.5445 0.8214 1.5007 48 1 11.4427 2.2874 2.5059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108311068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:06 Heat of formation + Delta-G solvation = 37.102138 kcal Electronic energy + Delta-G solvation = -29495.974662 eV Core-core repulsion = 25396.111070 eV Total energy + Delta-G solvation = -4099.863592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.37387 -39.56128 -38.57573 -36.39035 -34.90645 -34.27898 -33.02275 -31.80908 -31.22554 -30.83830 -27.90361 -27.60337 -26.41752 -25.62829 -23.52515 -23.18515 -22.91885 -21.86621 -21.14393 -20.21310 -18.79560 -18.14852 -17.03628 -16.55751 -16.36074 -15.92250 -15.66809 -15.39683 -15.06764 -14.81197 -14.60360 -14.35523 -14.05287 -13.92637 -13.82111 -13.46252 -13.21471 -12.98878 -12.76786 -12.61709 -12.42432 -12.40083 -12.04767 -11.84480 -11.58966 -11.51447 -11.31167 -11.14277 -10.98030 -10.78843 -10.63782 -10.58553 -10.26242 -10.20414 -10.10154 -9.88668 -9.48400 -9.46312 -8.99141 -8.75142 -8.50932 -6.71006 -5.81863 -3.24989 0.94534 1.64821 1.75662 3.29246 3.36416 3.37901 3.43442 3.44653 3.87259 4.07063 4.16680 4.31282 4.45490 4.46336 4.61644 4.64999 4.77585 4.85292 4.98444 5.13964 5.19766 5.37056 5.39071 5.43350 5.52977 5.56828 5.60230 5.67857 5.76387 5.99165 6.00770 6.06965 6.10711 6.15361 6.20493 6.36201 6.52905 6.62593 6.72684 6.81732 6.88420 7.11593 7.50230 7.60451 7.73812 7.87477 7.94630 8.33798 8.36226 9.13690 9.76773 10.34193 11.26040 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022669 B = 0.002216 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.875708 B =12632.771398 C =12993.010247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.363 5.363 5 C 0.090 3.910 6 C -0.095 4.095 7 C 0.599 3.401 8 O -0.545 6.545 9 N -0.699 5.699 10 C 0.140 3.860 11 C 0.078 3.922 12 C -0.163 4.163 13 C 0.160 3.840 14 N -0.590 5.590 15 C -0.253 4.253 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.383 6.383 26 N -0.203 5.203 27 N -0.066 5.066 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.204 0.796 36 H 0.411 0.589 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.030 0.970 44 H 0.255 0.745 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.074 -3.106 6.032 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.148 5.148 5 C -0.066 4.066 6 C -0.235 4.235 7 C 0.382 3.618 8 O -0.422 6.422 9 N -0.349 5.349 10 C 0.016 3.984 11 C 0.037 3.963 12 C -0.221 4.221 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.382 4.382 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.302 6.302 26 N -0.076 5.076 27 N -0.046 5.046 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.221 0.779 36 H 0.247 0.753 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.169 -3.319 6.468 26.198 hybrid contribution 0.673 -0.322 -1.071 1.305 sum -24.496 -3.641 5.398 25.347 Atomic orbital electron populations 1.21705 0.93843 1.02897 1.02337 1.21837 0.96951 0.94588 1.04303 1.22150 0.72603 1.00081 1.05146 1.50562 1.08777 1.35386 1.20123 1.23384 0.90169 0.97116 0.95971 1.21575 0.94718 1.07989 0.99206 1.16756 0.81848 0.79985 0.83221 1.90805 1.86713 1.38931 1.25769 1.45786 1.04851 1.52707 1.31581 1.21430 0.81112 1.00139 0.95714 1.22551 0.96295 0.93581 0.83882 1.22218 1.01549 0.95722 1.02581 1.21293 0.82207 0.97882 0.95284 1.43992 1.15822 1.68048 1.03532 1.19183 1.04945 1.21171 0.92884 0.91397 1.25037 0.99046 0.97315 0.98206 1.70021 1.47113 1.29152 1.08281 0.86259 0.80347 0.80762 0.79333 1.21416 1.21739 1.20410 1.21600 0.95259 0.97545 0.87304 1.23033 0.88303 0.98352 0.93494 1.87821 1.47755 1.72342 1.22314 1.74670 1.12785 1.09999 1.10188 1.81964 0.93410 1.17415 1.11827 0.92217 0.91621 0.92075 0.90990 0.89986 0.88348 0.87698 0.77891 0.75312 0.90558 0.89803 0.93700 0.91920 0.90804 0.88534 0.95219 0.93472 0.95657 0.92075 0.93341 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.91 37.16 0.37 -0.04 16 2 C -0.14 -0.62 6.14 -26.73 -0.16 -0.79 16 3 C 0.12 0.54 6.54 -4.04 -0.03 0.51 16 4 N -0.36 -3.24 3.69 -61.06 -0.23 -3.47 16 5 C 0.09 0.89 11.27 -16.84 -0.19 0.70 16 6 C -0.10 -1.28 6.99 -83.55 -0.58 -1.87 16 7 C 0.60 9.48 7.82 -12.47 -0.10 9.39 16 8 O -0.54 -9.82 16.86 5.29 0.09 -9.73 16 9 N -0.70 -11.19 5.15 -61.35 -0.32 -11.51 16 10 C 0.14 2.47 4.82 -4.04 -0.02 2.45 16 11 C 0.08 1.50 0.76 -90.46 -0.07 1.43 16 12 C -0.16 -2.93 7.91 37.16 0.29 -2.64 16 13 C 0.16 3.76 4.12 -3.53 -0.01 3.75 16 14 N -0.59 -14.50 2.56 -171.83 -0.44 -14.94 16 15 C -0.25 -6.76 9.65 -15.06 -0.15 -6.90 16 16 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 17 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 18 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 19 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.11 2.28 6.73 -3.54 -0.02 2.26 16 24 C 0.05 0.83 6.60 37.31 0.25 1.07 16 25 O -0.38 -7.35 9.97 -35.23 -0.35 -7.70 16 26 N -0.20 -2.86 12.04 32.85 0.40 -2.46 16 27 N -0.07 -0.81 13.65 60.35 0.82 0.01 16 28 H 0.06 0.12 8.14 -51.92 -0.42 -0.30 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.19 8.08 -51.93 -0.42 -0.23 16 35 H 0.20 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.41 6.37 6.89 -40.82 -0.28 6.09 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.04 0.71 6.87 -51.93 -0.36 0.35 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.43 6.11 -51.93 -0.32 1.11 16 42 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 47 H 0.05 0.85 6.25 -51.93 -0.32 0.52 16 48 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -32.89 390.44 -6.54 -39.43 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.48 Total: 3.90 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.51 Total: 9.31 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.85 Total: -57.49 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.26 Total: -17.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.89 -6.54 -39.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108311068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.533 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds