Wall clock time and date at job start Tue Mar 31 2020 20:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 N 1.46504 * 109.46952 * 179.97438 * 3 2 1 5 5 C 1.34812 * 126.58937 * 125.00182 * 4 3 2 6 6 C 1.36597 * 106.83873 * 180.02562 * 5 4 3 7 7 C 1.47526 * 125.77097 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99836 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99657 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99647 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.51558 * 60.10545 * 11 10 9 13 13 C 1.53297 * 109.55051 * 180.22727 * 11 10 9 14 14 N 1.47161 * 108.38409 * 172.24986 * 13 11 10 15 15 C 1.36932 * 120.97818 * 129.48616 * 14 13 11 16 16 H 1.08003 * 119.99805 * 206.21534 * 15 14 13 17 17 C 1.38816 * 120.00222 * 26.21787 * 15 14 13 18 18 N 1.31615 * 119.99874 * 16.92074 * 17 15 14 19 19 Si 1.86802 * 119.99757 * 196.91979 * 17 15 14 20 20 H 1.48499 * 109.47015 * 94.61787 * 19 17 15 21 21 H 1.48495 * 109.47062 * 214.62143 * 19 17 15 22 22 H 1.48501 * 109.47048 * 334.61927 * 19 17 15 23 23 C 1.47144 * 118.03546 * 309.46881 * 14 13 11 24 24 C 1.53295 * 108.38791 * 50.53058 * 23 14 13 25 25 O 1.42953 * 109.51548 * 299.99838 * 11 10 9 26 26 N 1.34404 * 108.45657 * 0.23777 * 6 5 4 27 27 N 1.28763 * 109.52504 * 359.59292 * 26 6 5 28 28 H 1.09007 * 109.46757 * 60.00080 * 1 2 3 29 29 H 1.08998 * 109.47870 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47241 * 300.00093 * 1 2 3 31 31 H 1.09004 * 109.46908 * 240.00029 * 2 1 3 32 32 H 1.09000 * 109.46696 * 120.00298 * 2 1 3 33 33 H 1.09004 * 109.47068 * 60.00127 * 3 2 1 34 34 H 1.08994 * 109.47116 * 299.99624 * 3 2 1 35 35 H 1.07993 * 126.58344 * 0.02562 * 5 4 3 36 36 H 0.97002 * 120.00095 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.47075 * 60.00158 * 10 9 7 38 38 H 1.08999 * 109.47425 * 299.99896 * 10 9 7 39 39 H 1.09005 * 109.46772 * 299.89548 * 12 11 10 40 40 H 1.08998 * 109.47452 * 59.89553 * 12 11 10 41 41 H 1.08997 * 109.47406 * 179.89718 * 12 11 10 42 42 H 1.08997 * 109.68565 * 291.97452 * 13 11 10 43 43 H 1.08997 * 109.68473 * 52.49385 * 13 11 10 44 44 H 0.97006 * 119.99439 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.68191 * 290.80778 * 23 14 13 46 46 H 1.08994 * 109.68285 * 170.25684 * 23 14 13 47 47 H 1.09004 * 109.50951 * 67.62473 * 24 23 14 48 48 H 1.08997 * 109.51466 * 187.72498 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.3091 2.0630 -0.8858 6 6 5.5945 1.7977 -0.5074 7 6 6.8110 2.2760 -1.1915 8 8 6.7165 2.9706 -2.1849 9 7 8.0270 1.9428 -0.7152 10 6 9.2349 2.4172 -1.3949 11 6 10.4716 1.9004 -0.6569 12 6 10.4608 0.3705 -0.6505 13 6 11.7369 2.4005 -1.3633 14 7 12.9008 2.0496 -0.5340 15 6 13.9820 1.4053 -1.0734 16 1 14.6117 0.7903 -0.4475 17 6 14.2687 1.5426 -2.4247 18 7 13.7309 2.5257 -3.1150 19 14 15.4179 0.3320 -3.2633 20 1 14.6212 -0.7494 -3.8967 21 1 16.2083 1.0386 -4.3030 22 1 16.3379 -0.2558 -2.2566 23 6 12.8687 2.4120 0.8918 24 6 11.5483 1.9114 1.4883 25 8 10.4615 2.3836 0.6885 26 7 5.5637 1.0226 0.5901 27 7 4.3405 0.7963 0.9228 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9969 2.6562 -1.7325 36 1 8.1023 1.3883 0.0771 37 1 9.2441 3.5071 -1.4010 38 1 9.2436 2.0481 -2.4204 39 1 9.5631 0.0156 -0.1442 40 1 10.4686 0.0028 -1.6766 41 1 11.3429 0.0031 -0.1262 42 1 11.8248 1.9242 -2.3397 43 1 11.6856 3.4824 -1.4859 44 1 13.9310 2.6213 -4.0593 45 1 12.9317 3.4951 0.9968 46 1 13.7060 1.9433 1.4086 47 1 11.5445 0.8214 1.5007 48 1 11.4427 2.2874 2.5059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108311068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:05 Heat of formation + Delta-G solvation = 13.742883 kcal Electronic energy + Delta-G solvation = -29496.987596 eV Core-core repulsion = 25396.111070 eV Total energy + Delta-G solvation = -4100.876525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.23742 -41.01520 -40.00644 -36.91550 -36.53711 -35.92082 -33.68261 -33.23729 -33.13009 -31.82194 -29.57183 -28.31358 -27.92445 -27.17557 -24.99475 -24.50734 -23.65749 -22.77912 -22.45939 -21.30408 -20.32992 -19.24361 -18.86284 -17.47467 -17.40703 -17.19740 -16.88817 -16.79349 -16.17231 -15.98003 -15.79089 -15.68765 -15.54785 -15.32070 -15.17549 -14.64845 -14.48773 -14.37976 -13.97148 -13.62144 -13.42597 -13.19314 -13.16566 -12.95577 -12.91404 -12.78560 -12.52973 -12.48620 -12.43254 -12.23357 -12.10624 -11.94449 -11.83343 -11.73676 -11.34457 -11.26813 -11.07604 -10.73666 -10.48514 -10.43142 -10.05095 -8.69899 -7.87659 -5.34216 0.15264 0.60828 1.10834 1.47262 1.48883 1.57653 2.08113 2.22935 2.49782 2.80987 3.17808 3.26549 3.36610 3.52235 3.79670 3.84141 3.93412 3.98204 4.02929 4.12684 4.16857 4.23733 4.43538 4.46723 4.48069 4.52829 4.59489 4.64066 4.71618 4.73550 4.79996 4.84340 4.98415 5.07276 5.12592 5.12885 5.18360 5.22473 5.32877 5.33453 5.36085 5.50805 5.55560 5.63699 6.31313 6.38606 6.41720 6.89854 7.08907 7.11542 7.77965 8.32408 9.18063 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022669 B = 0.002216 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.875708 B =12632.771398 C =12993.010247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.348 5.348 5 C 0.112 3.888 6 C -0.124 4.124 7 C 0.601 3.399 8 O -0.571 6.571 9 N -0.696 5.696 10 C 0.149 3.851 11 C 0.092 3.908 12 C -0.154 4.154 13 C 0.169 3.831 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.073 0.927 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.267 1.267 23 C 0.103 3.897 24 C 0.052 3.948 25 O -0.386 6.386 26 N -0.226 5.226 27 N -0.085 5.085 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.238 0.762 36 H 0.414 0.586 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.069 0.931 43 H -0.003 1.003 44 H 0.251 0.749 45 H 0.014 0.986 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.332 -3.928 6.932 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.133 5.133 5 C -0.046 4.046 6 C -0.264 4.264 7 C 0.387 3.613 8 O -0.450 6.450 9 N -0.346 5.346 10 C 0.025 3.975 11 C 0.051 3.949 12 C -0.211 4.211 13 C 0.042 3.958 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.090 0.910 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.795 3.205 20 H -0.212 1.212 21 H -0.224 1.224 22 H -0.192 1.192 23 C -0.022 4.022 24 C -0.026 4.026 25 O -0.306 6.306 26 N -0.099 5.099 27 N -0.066 5.066 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.255 0.745 36 H 0.251 0.749 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.015 0.985 44 H 0.060 0.940 45 H 0.032 0.968 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -27.463 -4.169 7.433 28.755 hybrid contribution 1.283 -0.018 -1.292 1.821 sum -26.181 -4.187 6.141 27.215 Atomic orbital electron populations 1.21678 0.92251 1.03059 1.03332 1.21787 0.98201 0.94382 1.02959 1.22672 0.69844 1.00550 1.07754 1.50870 1.10124 1.33616 1.18650 1.23851 0.88951 0.95806 0.96003 1.21368 0.94911 1.09945 1.00175 1.17024 0.82280 0.79228 0.82808 1.90783 1.87142 1.40151 1.26964 1.45656 1.04482 1.52870 1.31613 1.21147 0.81560 0.99264 0.95535 1.22229 0.94612 0.94404 0.83649 1.22111 1.02165 0.94322 1.02497 1.21052 0.84290 0.95637 0.94812 1.44236 1.15724 1.68073 1.05013 1.19509 1.05250 1.20869 0.93202 0.90979 1.25780 1.00974 0.98850 0.98907 1.70181 1.48865 1.30906 1.08122 0.85259 0.78559 0.78539 0.78147 1.21208 1.22430 1.19176 1.21797 0.97743 0.97082 0.85580 1.23106 0.85974 0.99005 0.94477 1.87832 1.48094 1.72655 1.21982 1.74636 1.13860 1.10703 1.10750 1.81881 0.93362 1.18336 1.12995 0.90900 0.91949 0.91375 0.91876 0.91870 0.86746 0.84106 0.74541 0.74862 0.91888 0.90150 0.91183 0.92379 0.91937 0.91266 0.98534 0.94020 0.96794 0.90980 0.92367 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 9.91 71.98 0.71 0.28 16 2 C -0.13 -0.94 6.14 30.59 0.19 -0.75 16 3 C 0.11 0.62 6.54 86.38 0.56 1.19 16 4 N -0.35 -5.36 3.69 -347.10 -1.28 -6.64 16 5 C 0.11 1.93 11.27 83.85 0.95 2.88 16 6 C -0.12 -3.20 6.99 40.82 0.29 -2.91 16 7 C 0.60 18.79 7.82 86.69 0.68 19.47 16 8 O -0.57 -20.43 16.86 -3.99 -0.07 -20.50 16 9 N -0.70 -22.09 5.15 -466.29 -2.40 -24.49 16 10 C 0.15 5.39 4.82 86.38 0.42 5.81 16 11 C 0.09 3.56 0.76 -10.69 -0.01 3.55 16 12 C -0.15 -5.42 7.91 71.98 0.57 -4.85 16 13 C 0.17 8.23 4.12 86.35 0.36 8.59 16 14 N -0.61 -30.24 2.56 -697.55 -1.79 -32.03 16 15 C -0.26 -13.95 9.65 84.04 0.81 -13.14 16 16 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 17 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 18 N -0.93 -55.17 11.14 21.65 0.24 -54.92 16 19 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C 0.10 4.27 6.73 86.36 0.58 4.85 16 24 C 0.05 1.76 6.60 72.08 0.48 2.23 16 25 O -0.39 -14.48 9.97 -148.98 -1.49 -15.97 16 26 N -0.23 -6.17 12.04 -49.99 -0.60 -6.77 16 27 N -0.09 -2.00 13.65 37.02 0.51 -1.50 16 28 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.14 -0.14 8.08 -2.39 -0.02 -0.16 16 35 H 0.24 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.41 12.52 6.89 -92.71 -0.64 11.88 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.07 2.11 6.87 -2.38 -0.02 2.09 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.36 6.11 -2.39 -0.01 2.34 16 42 H 0.07 3.75 6.14 -2.39 -0.01 3.73 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 45 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 47 H 0.06 1.90 6.25 -2.38 -0.01 1.88 16 48 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -73.31 390.44 2.48 -70.83 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.33 Total: 20.51 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 7.00 Total: 24.88 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -5.33 Total: -126.36 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.55 Total: -36.46 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -73.31 2.48 -70.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108311068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.573 kcal (2) G-P(sol) polarization free energy of solvation -73.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds