Wall clock time and date at job start Tue Mar 31 2020 20:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46910 * 2 1 4 4 N 1.46504 * 109.46892 * 179.97438 * 3 2 1 5 5 C 1.34817 * 126.59182 * 124.99843 * 4 3 2 6 6 C 1.36594 * 106.84011 * 179.97438 * 5 4 3 7 7 C 1.47528 * 125.77176 * 179.97438 * 6 5 4 8 8 O 1.21591 * 119.99805 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99954 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46984 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.55650 * 304.87668 * 11 10 9 13 13 C 1.53290 * 109.51251 * 184.74641 * 11 10 9 14 14 N 1.47166 * 108.41716 * 187.79804 * 13 11 10 15 15 C 1.36933 * 120.99120 * 230.54983 * 14 13 11 16 16 H 1.08000 * 120.00180 * 153.70650 * 15 14 13 17 17 C 1.38813 * 120.00094 * 333.70170 * 15 14 13 18 18 N 1.31620 * 119.99900 * 160.02568 * 17 15 14 19 19 Si 1.86798 * 119.99867 * 340.02586 * 17 15 14 20 20 H 1.48500 * 109.46937 * 91.85831 * 19 17 15 21 21 H 1.48502 * 109.47208 * 211.85857 * 19 17 15 22 22 H 1.48499 * 109.47296 * 331.85455 * 19 17 15 23 23 C 1.47155 * 118.02599 * 50.46688 * 14 13 11 24 24 C 1.53300 * 108.41547 * 309.53664 * 23 14 13 25 25 O 1.42958 * 109.22465 * 52.28134 * 24 23 14 26 26 N 1.34407 * 108.45682 * 0.24339 * 6 5 4 27 27 N 1.28760 * 109.52029 * 359.58807 * 26 6 5 28 28 H 1.08998 * 109.47242 * 299.99629 * 1 2 3 29 29 H 1.09000 * 109.47524 * 59.99760 * 1 2 3 30 30 H 1.09009 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47013 * 239.99892 * 2 1 3 32 32 H 1.09000 * 109.47524 * 120.00240 * 2 1 3 33 33 H 1.08992 * 109.47512 * 60.00324 * 3 2 1 34 34 H 1.09001 * 109.47180 * 299.99872 * 3 2 1 35 35 H 1.08000 * 126.58084 * 359.97438 * 5 4 3 36 36 H 0.97002 * 120.00162 * 359.97438 * 9 7 6 37 37 H 1.08997 * 109.46914 * 59.99984 * 10 9 7 38 38 H 1.08993 * 109.47356 * 299.99994 * 10 9 7 39 39 H 1.09005 * 109.47423 * 180.12984 * 12 11 10 40 40 H 1.09004 * 109.47263 * 300.12500 * 12 11 10 41 41 H 1.08996 * 109.47425 * 60.12348 * 12 11 10 42 42 H 1.09003 * 109.68354 * 307.50018 * 13 11 10 43 43 H 1.09005 * 109.68141 * 68.04879 * 13 11 10 44 44 H 0.96999 * 119.99776 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.68037 * 189.78791 * 23 14 13 46 46 H 1.09003 * 109.67969 * 69.27666 * 23 14 13 47 47 H 1.09000 * 109.50966 * 172.20794 * 24 23 14 48 48 H 1.09003 * 109.50501 * 292.30491 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3090 2.0632 -0.8858 6 6 5.5944 1.7990 -0.5068 7 6 6.8108 2.2776 -1.1906 8 8 6.7163 2.9724 -2.1840 9 7 8.0269 1.9447 -0.7143 10 6 9.2348 2.4195 -1.3937 11 6 10.4715 1.9040 -0.6549 12 6 10.3997 2.3195 0.8158 13 6 11.7331 2.4960 -1.2933 14 7 12.9079 1.8441 -0.6925 15 6 13.9451 2.5840 -0.1907 16 1 14.5684 2.1785 0.5925 17 6 14.1955 3.8553 -0.6887 18 7 14.9016 4.7119 0.0186 19 14 13.5304 4.3504 -2.3626 20 1 12.2005 4.9903 -2.1972 21 1 14.4654 5.3103 -3.0026 22 1 13.3965 3.1444 -3.2185 23 6 12.9340 0.3736 -0.6454 24 6 11.6137 -0.1151 -0.0386 25 8 10.5224 0.4781 -0.7463 26 7 5.5635 1.0243 0.5911 27 7 4.3404 0.7975 0.9234 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.9967 2.6557 -1.7331 36 1 8.1023 1.3907 0.0784 37 1 9.2436 3.5094 -1.3996 38 1 9.2437 2.0505 -2.4192 39 1 11.2824 1.9535 1.3403 40 1 10.3609 3.4067 0.8847 41 1 9.5048 1.8945 1.2702 42 1 11.7216 2.3125 -2.3677 43 1 11.7716 3.5688 -1.1040 44 1 15.0768 5.6001 -0.3296 45 1 13.7677 0.0409 -0.0271 46 1 13.0437 -0.0241 -1.6543 47 1 11.5546 -1.2003 -0.1215 48 1 11.5673 0.1730 1.0117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108311069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:10 Heat of formation + Delta-G solvation = 44.026396 kcal Electronic energy + Delta-G solvation = -29617.710663 eV Core-core repulsion = 25518.147330 eV Total energy + Delta-G solvation = -4099.563334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.44295 -39.78844 -38.79308 -36.43983 -35.11255 -34.49875 -33.08296 -31.99143 -31.55938 -30.95343 -28.39333 -27.67129 -26.61567 -25.75316 -23.64422 -23.52766 -22.99073 -21.92498 -21.08366 -20.33209 -19.12332 -18.36358 -17.14535 -16.64556 -16.47224 -16.15716 -15.74458 -15.59699 -15.37678 -14.91067 -14.70176 -14.55488 -14.26086 -14.08337 -13.91549 -13.78641 -13.36491 -13.22314 -12.72762 -12.66303 -12.45518 -12.32725 -12.26943 -12.08469 -11.82628 -11.63720 -11.48851 -11.37093 -11.34898 -11.02925 -10.81194 -10.64431 -10.36413 -10.21779 -10.12758 -9.69627 -9.53958 -9.49274 -9.35952 -8.91705 -8.55680 -7.00695 -5.98656 -3.35542 0.88107 1.56601 1.69662 3.16377 3.27035 3.30063 3.47994 3.50441 3.82053 3.99610 4.09787 4.12575 4.40608 4.49178 4.53901 4.60885 4.72538 4.76684 4.78493 4.94472 5.08941 5.20462 5.28137 5.34819 5.35811 5.39873 5.45900 5.55832 5.59966 5.77974 5.82307 5.86797 5.96109 6.04613 6.04807 6.10907 6.27697 6.33424 6.48036 6.48589 6.54950 6.65968 6.80842 7.48538 7.68418 7.78035 7.85265 8.21186 8.27089 8.85016 9.65868 10.02436 11.16858 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.002362 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.868817 B =11853.739896 C =12417.510205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.363 5.363 5 C 0.091 3.909 6 C -0.097 4.097 7 C 0.601 3.399 8 O -0.544 6.544 9 N -0.700 5.700 10 C 0.135 3.865 11 C 0.089 3.911 12 C -0.166 4.166 13 C 0.109 3.891 14 N -0.603 5.603 15 C -0.260 4.260 16 H 0.088 0.912 17 C 0.025 3.975 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.269 1.269 23 C 0.113 3.887 24 C 0.044 3.956 25 O -0.379 6.379 26 N -0.203 5.203 27 N -0.064 5.064 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.204 0.796 36 H 0.412 0.588 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.263 0.737 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.086 0.914 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.858 -8.085 -0.090 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.148 5.148 5 C -0.065 4.065 6 C -0.236 4.236 7 C 0.384 3.616 8 O -0.422 6.422 9 N -0.351 5.351 10 C 0.011 3.989 11 C 0.047 3.953 12 C -0.224 4.224 13 C -0.018 4.018 14 N -0.328 5.328 15 C -0.388 4.388 16 H 0.106 0.894 17 C -0.174 4.174 18 N -0.549 5.549 19 Si 0.708 3.292 20 H -0.213 1.213 21 H -0.230 1.230 22 H -0.194 1.194 23 C -0.013 4.013 24 C -0.034 4.034 25 O -0.298 6.298 26 N -0.076 5.076 27 N -0.044 5.044 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.221 0.779 36 H 0.249 0.751 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.104 0.896 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.891 -8.406 0.375 29.133 hybrid contribution -0.222 0.922 -1.333 1.636 sum -28.114 -7.484 -0.958 29.108 Atomic orbital electron populations 1.21705 0.93810 1.02925 1.02352 1.21837 0.96983 0.94540 1.04318 1.22165 0.72521 1.00134 1.05190 1.50572 1.08823 1.35320 1.20051 1.23383 0.90144 0.97051 0.95957 1.21517 0.94622 1.08164 0.99333 1.16752 0.81817 0.79878 0.83133 1.90807 1.86731 1.38959 1.25662 1.45771 1.04725 1.52844 1.31764 1.21438 0.81421 0.99358 0.96663 1.22241 0.94755 0.82368 0.95904 1.22239 1.02172 1.02252 0.95694 1.21919 0.85962 0.98097 0.95816 1.44296 1.16970 1.00473 1.71035 1.18884 1.07504 0.97536 1.14826 0.89424 1.25245 0.97693 0.96532 0.97975 1.69820 1.42522 1.05709 1.36810 0.87049 0.77209 0.78040 0.86868 1.21339 1.22964 1.19446 1.21634 0.95931 0.84984 0.98757 1.23085 0.87669 0.96758 0.95915 1.87860 1.48934 1.18873 1.74128 1.74672 1.12846 1.09903 1.10215 1.81970 0.93372 1.17358 1.11739 0.92057 0.92216 0.91595 0.90988 0.89962 0.88295 0.87676 0.77880 0.75137 0.89724 0.90413 0.90212 0.91592 0.93141 0.94592 0.89918 0.92676 0.91042 0.95139 0.89637 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 9.91 37.15 0.37 0.00 16 2 C -0.14 -0.58 6.14 -26.73 -0.16 -0.74 16 3 C 0.12 0.49 6.54 -4.04 -0.03 0.47 16 4 N -0.36 -3.07 3.69 -61.06 -0.23 -3.30 16 5 C 0.09 0.85 11.27 -16.83 -0.19 0.66 16 6 C -0.10 -1.24 6.99 -83.55 -0.58 -1.83 16 7 C 0.60 9.06 7.82 -12.47 -0.10 8.96 16 8 O -0.54 -9.37 16.86 5.29 0.09 -9.28 16 9 N -0.70 -10.58 5.19 -61.35 -0.32 -10.90 16 10 C 0.13 2.24 4.85 -4.04 -0.02 2.22 16 11 C 0.09 1.61 0.78 -90.47 -0.07 1.54 16 12 C -0.17 -2.87 7.86 37.15 0.29 -2.58 16 13 C 0.11 2.36 3.05 -3.53 -0.01 2.35 16 14 N -0.60 -14.07 2.35 -171.81 -0.40 -14.48 16 15 C -0.26 -7.08 10.10 -15.06 -0.15 -7.23 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.02 0.71 5.26 -17.43 -0.09 0.61 16 18 N -0.91 -27.38 13.97 55.49 0.78 -26.60 16 19 Si 0.88 22.26 24.29 -169.99 -4.13 18.13 16 20 H -0.29 -6.94 6.58 56.52 0.37 -6.57 16 21 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 22 H -0.27 -6.78 6.55 56.52 0.37 -6.41 16 23 C 0.11 2.19 6.73 -3.53 -0.02 2.17 16 24 C 0.04 0.72 6.60 37.31 0.25 0.97 16 25 O -0.38 -6.76 10.17 -35.23 -0.36 -7.12 16 26 N -0.20 -2.74 12.04 32.85 0.40 -2.34 16 27 N -0.06 -0.76 13.65 60.35 0.82 0.06 16 28 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.06 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.11 0.16 8.08 -51.93 -0.42 -0.26 16 35 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.41 5.98 6.69 -40.82 -0.27 5.70 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.52 6.12 -51.93 -0.32 1.20 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.76 6.59 -51.93 -0.34 0.41 16 42 H 0.04 0.80 6.86 -51.93 -0.36 0.45 16 43 H 0.08 1.94 4.60 -51.93 -0.24 1.70 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.05 0.89 6.26 -51.93 -0.32 0.57 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -33.96 383.50 -5.48 -39.44 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.38 Total: 3.05 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -0.52 Total: 7.57 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 1.05 Total: -57.57 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.27 Total: -16.40 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.13 Total: 18.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.96 -5.48 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108311069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.466 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds