Wall clock time and date at job start Tue Mar 31 2020 19:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46746 * 120.00067 * 2 1 3 5 5 C 1.50706 * 109.47341 * 239.99447 * 2 1 3 6 6 N 1.35377 * 126.56488 * 1.75977 * 5 2 1 7 7 H 0.97004 * 126.13200 * 359.97438 * 6 5 2 8 8 C 1.35845 * 107.73042 * 179.97438 * 6 5 2 9 9 N 1.30167 * 109.00288 * 0.02562 * 8 6 5 10 10 C 1.35760 * 108.86580 * 359.72974 * 9 8 6 11 11 C 1.47328 * 126.23234 * 180.27421 * 10 9 8 12 12 O 1.21629 * 119.99773 * 174.62850 * 11 10 9 13 13 N 1.34774 * 120.00571 * 354.63447 * 11 10 9 14 14 C 1.46494 * 120.00266 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47169 * 179.97438 * 14 13 11 16 16 N 1.46907 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.46896 * 111.00046 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47090 * 180.02562 * 17 16 15 19 19 O 1.21295 * 120.00026 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00098 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00285 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99645 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00397 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00134 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47116 * 60.00078 * 25 23 21 27 27 H 1.48498 * 109.47227 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47397 * 300.00136 * 25 23 21 29 29 H 1.09005 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46655 * 60.00145 * 1 2 3 31 31 H 1.08993 * 109.47421 * 300.00362 * 1 2 3 32 32 H 1.09000 * 109.47311 * 70.24934 * 3 2 1 33 33 H 1.09007 * 109.47158 * 190.24253 * 3 2 1 34 34 H 1.08997 * 109.47535 * 310.24473 * 3 2 1 35 35 H 1.09002 * 109.47467 * 65.24306 * 4 2 1 36 36 H 1.09010 * 109.47336 * 185.24142 * 4 2 1 37 37 H 1.09002 * 109.47150 * 305.24274 * 4 2 1 38 38 H 1.07998 * 125.49529 * 180.02562 * 8 6 5 39 39 H 0.96998 * 119.99584 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47222 * 299.99906 * 14 13 11 41 41 H 1.09004 * 109.47356 * 60.00105 * 14 13 11 42 42 H 1.09002 * 109.47316 * 300.00269 * 15 14 13 43 43 H 1.09008 * 109.47026 * 59.99981 * 15 14 13 44 44 H 1.00894 * 110.99165 * 56.05011 * 16 15 14 45 45 H 1.08997 * 109.47005 * 300.00353 * 17 16 15 46 46 H 1.08997 * 109.47188 * 59.99822 * 17 16 15 47 47 H 0.97007 * 119.99944 * 0.02562 * 20 18 17 48 48 H 0.96994 * 120.00116 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 1.2766 -1.2430 -2.2193 7 1 0.3077 -1.2370 -2.2651 8 6 2.1185 -1.7873 -3.1360 9 7 3.3464 -1.6070 -2.7435 10 6 3.3360 -0.9353 -1.5637 11 6 4.5172 -0.5264 -0.7840 12 8 4.3812 0.1580 0.2122 13 7 5.7486 -0.9107 -1.1745 14 6 6.9231 -0.5046 -0.3987 15 6 8.1860 -1.0696 -1.0520 16 7 9.3639 -0.6619 -0.2744 17 6 10.5979 -1.1870 -0.8738 18 6 11.7819 -0.7497 -0.0504 19 8 11.6141 -0.0681 0.9388 20 7 13.0270 -1.1169 -0.4125 21 6 14.1042 -0.7187 0.3363 22 1 13.9549 -0.1110 1.2166 23 6 15.3879 -1.0977 -0.0367 24 7 15.5696 -1.8374 -1.1076 25 14 16.8555 -0.5556 0.9839 26 1 16.7155 -1.0763 2.3676 27 1 18.1029 -1.0870 0.3784 28 1 16.9147 0.9278 1.0170 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.8337 1.9008 0.9672 33 1 3.1146 1.4479 -0.1827 34 1 1.5352 2.0063 -0.7844 35 1 1.7552 -1.7725 1.2036 36 1 3.1259 -0.6407 1.2975 37 1 1.6019 -0.2645 2.1368 38 1 1.8176 -2.2887 -4.0440 39 1 5.8570 -1.4568 -1.9687 40 1 6.9828 0.5834 -0.3726 41 1 6.8375 -0.8884 0.6179 42 1 8.1261 -2.1577 -1.0778 43 1 8.2718 -0.6862 -2.0688 44 1 9.2784 -0.9497 0.6888 45 1 10.5551 -2.2758 -0.8984 46 1 10.6999 -0.8044 -1.8893 47 1 13.1612 -1.6623 -1.2034 48 1 16.4657 -2.1016 -1.3682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127659842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:22 Heat of formation + Delta-G solvation = -18.633591 kcal Electronic energy + Delta-G solvation = -28262.360196 eV Core-core repulsion = 24160.079721 eV Total energy + Delta-G solvation = -4102.280475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75248 -39.49073 -38.27275 -37.17813 -36.10535 -34.24506 -33.69021 -33.01493 -31.20380 -29.95722 -29.03042 -27.59101 -27.41126 -26.09787 -24.26653 -23.21066 -22.43378 -21.92782 -20.95602 -19.67561 -19.22201 -18.20890 -17.86794 -16.61642 -16.19282 -16.14858 -15.84034 -15.65588 -15.12650 -15.00290 -14.83244 -14.57997 -14.39350 -14.22510 -13.93928 -13.68800 -13.54837 -13.34653 -13.04814 -12.74390 -12.50365 -12.35932 -11.88934 -11.77626 -11.70635 -11.48313 -11.39577 -11.30698 -11.25604 -11.22351 -10.97793 -10.53656 -10.49562 -10.41599 -10.18551 -9.88377 -9.47174 -9.09995 -8.77617 -8.45397 -8.07000 -7.93261 -6.38835 -3.79611 1.25813 2.07203 2.47996 3.09879 3.22920 3.28300 3.32599 3.33192 3.93805 3.97719 4.15063 4.22273 4.35290 4.48745 4.56702 4.71952 4.84335 4.94561 5.02992 5.08912 5.15519 5.23839 5.26555 5.30275 5.43775 5.48962 5.49805 5.59009 5.74666 5.76758 5.79072 5.80891 5.91531 5.97900 6.00767 6.06559 6.15700 6.29056 6.30095 6.56342 6.75710 7.16465 7.27594 7.56667 7.57984 7.64151 8.08992 8.18578 8.64229 9.20688 9.57091 10.08712 10.78849 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030465 B = 0.001591 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.879578 B =17598.522193 C =18303.977552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.010 3.990 3 C -0.151 4.151 4 C -0.155 4.155 5 C 0.084 3.916 6 N -0.564 5.564 7 H 0.423 0.577 8 C 0.184 3.816 9 N -0.461 5.461 10 C -0.064 4.064 11 C 0.600 3.400 12 O -0.527 6.527 13 N -0.713 5.713 14 C 0.121 3.879 15 C 0.049 3.951 16 N -0.665 5.665 17 C 0.052 3.948 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.215 0.785 39 H 0.407 0.593 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.352 0.648 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.418 -2.147 -5.579 33.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 C -0.208 4.208 4 C -0.212 4.212 5 C -0.038 4.038 6 N -0.167 5.167 7 H 0.262 0.738 8 C -0.101 4.101 9 N -0.181 5.181 10 C -0.192 4.192 11 C 0.387 3.613 12 O -0.405 6.405 13 N -0.364 5.364 14 C -0.002 4.002 15 C -0.081 4.081 16 N -0.298 5.298 17 C -0.080 4.080 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.231 0.769 39 H 0.242 0.758 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.171 0.829 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.226 0.774 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -32.535 -0.935 -5.010 32.932 hybrid contribution -0.474 -1.281 -0.187 1.378 sum -33.009 -2.216 -5.198 33.489 Atomic orbital electron populations 1.22044 0.94605 1.01694 1.02790 1.19121 0.94407 0.95857 0.89746 1.22147 1.05093 0.92151 1.01390 1.22182 1.05796 0.98465 0.94773 1.21233 0.90793 0.99331 0.92453 1.43188 1.10770 1.44359 1.18358 0.73826 1.25124 0.84770 1.02915 0.97286 1.70591 1.21148 1.15624 1.10701 1.20301 0.92424 1.09662 0.96850 1.16805 0.81714 0.79372 0.83448 1.90624 1.85270 1.38521 1.26130 1.45694 1.05625 1.54327 1.30716 1.21296 0.82768 1.01258 0.94925 1.22083 0.89836 0.97548 0.98665 1.59933 0.99726 1.63759 1.06408 1.21667 0.89827 0.97365 0.99184 1.19789 0.84010 0.85743 0.87876 1.90531 1.85207 1.42063 1.28827 1.41848 1.04616 1.46913 1.26638 1.19667 0.84109 1.30390 1.08778 0.87942 1.25260 0.98992 0.96814 0.96873 1.69604 1.23561 1.36625 1.24571 0.85907 0.79706 0.79032 0.79507 1.19930 1.21008 1.19883 0.92717 0.92741 0.91020 0.92003 0.88431 0.93842 0.93715 0.88150 0.92164 0.76899 0.75771 0.90034 0.91239 0.94877 0.90404 0.82866 0.93719 0.89445 0.77444 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 7.54 37.16 0.28 -0.50 16 2 C 0.01 0.08 0.75 -155.66 -0.12 -0.04 16 3 C -0.15 -1.38 8.18 37.15 0.30 -1.07 16 4 C -0.16 -1.40 8.18 37.16 0.30 -1.10 16 5 C 0.08 0.73 5.59 -81.68 -0.46 0.27 16 6 N -0.56 -3.06 5.83 -10.11 -0.06 -3.11 16 7 H 0.42 0.88 8.11 -40.82 -0.33 0.55 16 8 C 0.18 1.13 13.04 -89.91 -1.17 -0.04 16 9 N -0.46 -4.57 11.02 -11.03 -0.12 -4.69 16 10 C -0.06 -0.70 6.78 -83.09 -0.56 -1.26 16 11 C 0.60 7.41 7.36 -12.56 -0.09 7.32 16 12 O -0.53 -7.26 10.04 5.25 0.05 -7.20 16 13 N -0.71 -8.04 5.55 -61.41 -0.34 -8.38 16 14 C 0.12 1.47 5.93 -4.05 -0.02 1.44 16 15 C 0.05 0.60 5.80 -3.82 -0.02 0.58 16 16 N -0.67 -10.86 6.13 -115.05 -0.70 -11.56 16 17 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 18 C 0.44 10.54 7.82 -10.99 -0.09 10.45 16 19 O -0.58 -16.06 15.78 5.54 0.09 -15.97 16 20 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 21 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.05 0.23 8.13 -51.93 -0.42 -0.20 16 30 H 0.05 0.22 8.05 -51.93 -0.42 -0.20 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.53 8.11 -51.93 -0.42 0.10 16 33 H 0.10 1.16 4.67 -51.93 -0.24 0.91 16 34 H 0.04 0.35 8.11 -51.93 -0.42 -0.07 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 1.17 4.63 -51.92 -0.24 0.93 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.21 0.40 8.06 -52.49 -0.42 -0.03 16 39 H 0.41 4.11 8.20 -40.82 -0.33 3.78 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 44 H 0.35 5.91 8.43 -39.29 -0.33 5.57 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 393.01 15.07 5.92 5.92 Total: -1.00 -34.49 393.01 -8.66 -43.14 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -7.22 Total: 15.22 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -1.92 Total: 8.86 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.56 Total: -66.21 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.14 Total: -23.17 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.49 -8.66 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127659842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.511 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds