Wall clock time and date at job start Tue Mar 31 2020 19:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46746 * 120.00067 * 2 1 3 5 5 C 1.50706 * 109.47341 * 239.99447 * 2 1 3 6 6 N 1.35377 * 126.56488 * 1.75977 * 5 2 1 7 7 H 0.97004 * 126.13200 * 359.97438 * 6 5 2 8 8 C 1.35845 * 107.73042 * 179.97438 * 6 5 2 9 9 N 1.30167 * 109.00288 * 0.02562 * 8 6 5 10 10 C 1.35760 * 108.86580 * 359.72974 * 9 8 6 11 11 C 1.47328 * 126.23234 * 180.27421 * 10 9 8 12 12 O 1.21629 * 119.99773 * 174.62850 * 11 10 9 13 13 N 1.34774 * 120.00571 * 354.63447 * 11 10 9 14 14 C 1.46494 * 120.00266 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47169 * 179.97438 * 14 13 11 16 16 N 1.46907 * 109.47346 * 179.97438 * 15 14 13 17 17 C 1.46896 * 111.00046 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47090 * 180.02562 * 17 16 15 19 19 O 1.21295 * 120.00026 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00098 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00285 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99645 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00397 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00134 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47116 * 60.00078 * 25 23 21 27 27 H 1.48498 * 109.47227 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47397 * 300.00136 * 25 23 21 29 29 H 1.09005 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46655 * 60.00145 * 1 2 3 31 31 H 1.08993 * 109.47421 * 300.00362 * 1 2 3 32 32 H 1.09000 * 109.47311 * 70.24934 * 3 2 1 33 33 H 1.09007 * 109.47158 * 190.24253 * 3 2 1 34 34 H 1.08997 * 109.47535 * 310.24473 * 3 2 1 35 35 H 1.09002 * 109.47467 * 65.24306 * 4 2 1 36 36 H 1.09010 * 109.47336 * 185.24142 * 4 2 1 37 37 H 1.09002 * 109.47150 * 305.24274 * 4 2 1 38 38 H 1.07998 * 125.49529 * 180.02562 * 8 6 5 39 39 H 0.96998 * 119.99584 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47222 * 299.99906 * 14 13 11 41 41 H 1.09004 * 109.47356 * 60.00105 * 14 13 11 42 42 H 1.09002 * 109.47316 * 300.00269 * 15 14 13 43 43 H 1.09008 * 109.47026 * 59.99981 * 15 14 13 44 44 H 1.00894 * 110.99165 * 56.05011 * 16 15 14 45 45 H 1.08997 * 109.47005 * 300.00353 * 17 16 15 46 46 H 1.08997 * 109.47188 * 59.99822 * 17 16 15 47 47 H 0.97007 * 119.99944 * 0.02562 * 20 18 17 48 48 H 0.96994 * 120.00116 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 1.2766 -1.2430 -2.2193 7 1 0.3077 -1.2370 -2.2651 8 6 2.1185 -1.7873 -3.1360 9 7 3.3464 -1.6070 -2.7435 10 6 3.3360 -0.9353 -1.5637 11 6 4.5172 -0.5264 -0.7840 12 8 4.3812 0.1580 0.2122 13 7 5.7486 -0.9107 -1.1745 14 6 6.9231 -0.5046 -0.3987 15 6 8.1860 -1.0696 -1.0520 16 7 9.3639 -0.6619 -0.2744 17 6 10.5979 -1.1870 -0.8738 18 6 11.7819 -0.7497 -0.0504 19 8 11.6141 -0.0681 0.9388 20 7 13.0270 -1.1169 -0.4125 21 6 14.1042 -0.7187 0.3363 22 1 13.9549 -0.1110 1.2166 23 6 15.3879 -1.0977 -0.0367 24 7 15.5696 -1.8374 -1.1076 25 14 16.8555 -0.5556 0.9839 26 1 16.7155 -1.0763 2.3676 27 1 18.1029 -1.0870 0.3784 28 1 16.9147 0.9278 1.0170 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.8337 1.9008 0.9672 33 1 3.1146 1.4479 -0.1827 34 1 1.5352 2.0063 -0.7844 35 1 1.7552 -1.7725 1.2036 36 1 3.1259 -0.6407 1.2975 37 1 1.6019 -0.2645 2.1368 38 1 1.8176 -2.2887 -4.0440 39 1 5.8570 -1.4568 -1.9687 40 1 6.9828 0.5834 -0.3726 41 1 6.8375 -0.8884 0.6179 42 1 8.1261 -2.1577 -1.0778 43 1 8.2718 -0.6862 -2.0688 44 1 9.2784 -0.9497 0.6888 45 1 10.5551 -2.2758 -0.8984 46 1 10.6999 -0.8044 -1.8893 47 1 13.1612 -1.6623 -1.2034 48 1 16.4657 -2.1016 -1.3682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127659842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:21 Heat of formation + Delta-G solvation = -45.702622 kcal Electronic energy + Delta-G solvation = -28263.533997 eV Core-core repulsion = 24160.079721 eV Total energy + Delta-G solvation = -4103.454276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.33531 -40.41758 -40.11121 -37.89806 -37.24874 -35.96320 -35.09974 -33.63304 -33.25622 -30.88560 -29.94001 -28.14395 -28.12547 -27.66319 -25.80779 -24.24454 -22.99828 -22.93444 -21.62394 -21.08563 -20.43149 -19.90699 -18.81736 -17.87779 -17.30198 -17.12127 -17.08843 -16.61668 -16.43745 -15.99294 -15.91102 -15.55457 -15.45033 -15.36233 -15.20059 -14.94775 -14.46717 -14.43874 -14.08911 -13.98751 -13.50940 -13.30799 -13.19497 -13.06367 -12.91783 -12.63556 -12.52393 -12.42252 -12.41296 -12.16549 -12.11312 -11.93024 -11.90127 -11.49700 -11.14585 -11.08503 -10.77511 -10.35837 -10.02483 -10.01016 -9.44645 -9.38530 -8.45781 -5.94639 0.55445 1.40804 1.42639 1.48611 1.53628 1.90855 2.05769 2.24751 2.34150 2.52862 3.04828 3.21397 3.43982 3.55653 3.65092 3.81601 3.90840 4.02855 4.12776 4.27850 4.32625 4.34152 4.36763 4.47532 4.51166 4.61807 4.65508 4.76064 4.86041 4.89838 4.92177 4.95853 5.01084 5.06200 5.09093 5.22764 5.35468 5.41635 5.44073 5.53346 5.73121 5.84870 6.07188 6.32248 6.33860 6.57156 6.60908 6.88980 7.13188 7.31110 7.56660 8.12258 8.71302 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030465 B = 0.001591 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.879578 B =17598.522193 C =18303.977552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.010 3.990 3 C -0.148 4.148 4 C -0.152 4.152 5 C 0.084 3.916 6 N -0.548 5.548 7 H 0.441 0.559 8 C 0.202 3.798 9 N -0.497 5.497 10 C -0.095 4.095 11 C 0.590 3.410 12 O -0.549 6.549 13 N -0.708 5.708 14 C 0.132 3.868 15 C 0.059 3.941 16 N -0.683 5.683 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.258 0.742 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.347 0.653 45 H 0.072 0.928 46 H 0.108 0.892 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.385 -3.223 -7.190 36.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 C -0.205 4.205 4 C -0.210 4.210 5 C -0.040 4.040 6 N -0.152 5.152 7 H 0.284 0.716 8 C -0.083 4.083 9 N -0.217 5.217 10 C -0.223 4.223 11 C 0.378 3.622 12 O -0.429 6.429 13 N -0.359 5.359 14 C 0.007 3.993 15 C -0.070 4.070 16 N -0.316 5.316 17 C -0.065 4.065 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.198 1.198 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.274 0.726 39 H 0.250 0.750 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.165 0.835 45 H 0.090 0.910 46 H 0.126 0.874 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -34.539 -2.035 -6.665 35.235 hybrid contribution 0.043 -0.952 0.279 0.993 sum -34.496 -2.987 -6.386 35.209 Atomic orbital electron populations 1.22006 0.91882 1.02926 1.03763 1.19110 0.96483 0.94587 0.88975 1.22070 1.03258 0.93486 1.01730 1.22106 1.03925 0.98978 0.95962 1.21250 0.90543 0.99085 0.93086 1.43135 1.11652 1.43252 1.17175 0.71638 1.26002 0.83782 1.00864 0.97702 1.70546 1.23389 1.16988 1.10772 1.20204 0.92572 1.11618 0.97876 1.17201 0.82430 0.79106 0.83465 1.90626 1.85703 1.39444 1.27149 1.45592 1.05153 1.54384 1.30783 1.21058 0.83371 1.00010 0.94821 1.22044 0.87957 0.98683 0.98348 1.59903 1.00521 1.64563 1.06592 1.21529 0.87569 0.98876 0.98539 1.20886 0.84997 0.84196 0.87581 1.90499 1.86001 1.43701 1.30885 1.41909 1.04906 1.47357 1.26728 1.19646 0.85820 1.31889 1.09261 0.90359 1.26037 1.00955 0.96373 0.97836 1.69662 1.24517 1.36608 1.25197 0.84982 0.76721 0.78530 0.78054 1.19710 1.19389 1.19818 0.91324 0.91247 0.90666 0.91875 0.91413 0.92923 0.93380 0.91072 0.91424 0.72621 0.75005 0.91944 0.92066 0.92898 0.89264 0.83475 0.91041 0.87413 0.76868 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 7.54 71.98 0.54 -0.59 16 2 C 0.01 0.15 0.75 -52.93 -0.04 0.11 16 3 C -0.15 -2.73 8.18 71.98 0.59 -2.14 16 4 C -0.15 -2.77 8.18 71.98 0.59 -2.18 16 5 C 0.08 1.36 5.59 41.59 0.23 1.59 16 6 N -0.55 -4.39 5.83 -185.91 -1.08 -5.48 16 7 H 0.44 0.19 8.11 -92.71 -0.75 -0.56 16 8 C 0.20 1.89 13.04 180.10 2.35 4.24 16 9 N -0.50 -9.17 11.02 -188.82 -2.08 -11.25 16 10 C -0.10 -2.06 6.78 40.50 0.27 -1.79 16 11 C 0.59 15.21 7.36 86.64 0.64 15.85 16 12 O -0.55 -16.21 10.04 -4.12 -0.04 -16.25 16 13 N -0.71 -16.32 5.55 -466.46 -2.59 -18.91 16 14 C 0.13 3.28 5.93 86.38 0.51 3.79 16 15 C 0.06 1.39 5.80 86.30 0.50 1.89 16 16 N -0.68 -22.04 6.13 -517.92 -3.17 -25.21 16 17 C 0.07 2.31 6.17 85.56 0.53 2.84 16 18 C 0.44 21.11 7.82 87.66 0.69 21.80 16 19 O -0.62 -35.47 15.78 -3.08 -0.05 -35.52 16 20 N -0.57 -29.72 5.29 -306.99 -1.62 -31.34 16 21 C -0.34 -19.41 9.68 84.04 0.81 -18.60 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 25 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 H 0.07 0.35 8.13 -2.38 -0.02 0.33 16 30 H 0.07 0.34 8.05 -2.38 -0.02 0.32 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 1.09 8.11 -2.39 -0.02 1.07 16 33 H 0.07 1.71 4.67 -2.38 -0.01 1.70 16 34 H 0.05 0.83 8.11 -2.39 -0.02 0.81 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.77 4.63 -2.38 -0.01 1.76 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.26 -0.20 8.06 -2.91 -0.02 -0.23 16 39 H 0.41 8.28 8.20 -92.71 -0.76 7.52 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.35 11.79 8.43 -89.70 -0.76 11.03 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.40 19.46 7.90 -92.70 -0.73 18.73 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -77.66 393.01 -1.62 -79.28 By element: Atomic # 1 Polarization: 44.16 SS G_CDS: -1.97 Total: 42.19 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 8.68 Total: 26.62 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -10.27 Total: -141.80 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.09 Total: -51.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -77.66 -1.62 -79.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127659842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.579 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds