Wall clock time and date at job start Tue Mar 31 2020 20:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47271 * 240.00195 * 2 1 3 5 5 N 1.46497 * 109.47226 * 184.99953 * 4 2 1 6 6 N 1.28437 * 125.19244 * 264.32775 * 5 4 2 7 7 C 1.30862 * 110.92969 * 179.82064 * 6 5 4 8 8 C 1.39676 * 107.86045 * 0.43603 * 7 6 5 9 9 C 1.36601 * 125.18656 * 84.63259 * 5 4 2 10 10 C 1.47159 * 126.88763 * 0.02562 * 9 5 4 11 11 O 1.21631 * 120.00097 * 5.09980 * 10 9 5 12 12 N 1.34779 * 120.00219 * 185.09260 * 10 9 5 13 13 C 1.46493 * 120.00008 * 185.11449 * 12 10 9 14 14 C 1.53006 * 109.47279 * 180.02562 * 13 12 10 15 15 N 1.46890 * 109.47575 * 180.02562 * 14 13 12 16 16 C 1.46898 * 111.00573 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47374 * 180.02562 * 16 15 14 18 18 O 1.21284 * 119.99945 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99875 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00201 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99964 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99857 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00463 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99626 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46931 * 59.99764 * 24 22 20 26 26 H 1.48494 * 109.46954 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46783 * 300.00044 * 24 22 20 28 28 H 1.09000 * 109.47193 * 59.99654 * 1 2 3 29 29 H 1.09005 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47223 * 299.99715 * 1 2 3 31 31 H 1.09000 * 109.47193 * 120.00345 * 2 1 3 32 32 H 1.08997 * 109.47181 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47279 * 300.00293 * 3 2 1 34 34 H 1.09006 * 109.46557 * 60.00067 * 3 2 1 35 35 H 1.09001 * 109.47015 * 305.00306 * 4 2 1 36 36 H 1.09003 * 109.47060 * 65.00022 * 4 2 1 37 37 H 1.08000 * 126.07496 * 180.18688 * 7 6 5 38 38 H 1.07996 * 127.31844 * 179.70898 * 8 7 6 39 39 H 0.96997 * 119.99570 * 5.11157 * 12 10 9 40 40 H 1.09002 * 109.47239 * 299.99517 * 13 12 10 41 41 H 1.09003 * 109.47535 * 60.00390 * 13 12 10 42 42 H 1.09007 * 109.47028 * 300.00346 * 14 13 12 43 43 H 1.09003 * 109.46607 * 59.99713 * 14 13 12 44 44 H 1.00906 * 111.00309 * 56.04391 * 15 14 13 45 45 H 1.09004 * 109.46806 * 300.00108 * 16 15 14 46 46 H 1.08998 * 109.47216 * 59.99288 * 16 15 14 47 47 H 0.97007 * 119.99790 * 359.97438 * 19 17 16 48 48 H 0.96993 * 119.99785 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 7 4.3237 -0.0124 -1.7462 7 6 5.5613 -0.3676 -1.5125 8 6 5.5345 -1.5295 -0.7378 9 6 4.1931 -1.8083 -0.5415 10 6 3.6270 -2.9369 0.2144 11 8 2.4240 -3.1160 0.2301 12 7 4.4414 -3.7722 0.8894 13 6 3.8904 -4.9586 1.5487 14 6 5.0183 -5.7291 2.2381 15 7 4.4660 -6.9192 2.8987 16 6 5.5226 -7.6850 3.5733 17 6 4.9193 -8.8958 4.2374 18 8 3.7266 -9.1004 4.1571 19 7 5.7052 -9.7508 4.9214 20 6 5.1564 -10.8521 5.5261 21 1 4.0943 -11.0343 5.4546 22 6 5.9667 -11.7338 6.2308 23 7 7.2590 -11.5119 6.3183 24 14 5.2188 -13.2340 7.0553 25 1 4.5656 -14.0877 6.0307 26 1 6.2869 -14.0079 7.7375 27 1 4.2093 -12.7984 8.0534 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6053 -1.7197 -1.2952 36 1 1.7516 -0.1582 -2.1370 37 1 6.4463 0.1443 -1.8604 38 1 6.3806 -2.0913 -0.3706 39 1 5.3924 -3.5876 0.9385 40 1 3.1535 -4.6524 2.2912 41 1 3.4138 -5.5986 0.8061 42 1 5.7557 -6.0353 1.4959 43 1 5.4946 -5.0889 2.9807 44 1 3.9635 -7.4970 2.2416 45 1 6.2639 -8.0043 2.8407 46 1 6.0017 -7.0584 4.3255 47 1 6.6591 -9.5869 4.9859 48 1 7.8246 -12.1276 6.8099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128455645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:57 Heat of formation + Delta-G solvation = -28.500743 kcal Electronic energy + Delta-G solvation = -27932.726848 eV Core-core repulsion = 23830.018502 eV Total energy + Delta-G solvation = -4102.708346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.56429 -40.53880 -40.11832 -37.67774 -37.35486 -36.00082 -35.30018 -33.26772 -32.99616 -32.26559 -30.29440 -28.16167 -27.77279 -27.45980 -25.76280 -24.14754 -23.14974 -22.35994 -21.83863 -21.08664 -20.74692 -19.91041 -19.09935 -17.79318 -17.39595 -17.28062 -17.05557 -16.78816 -16.50902 -16.20675 -15.95761 -15.82860 -15.44294 -15.26566 -14.98092 -14.86152 -14.56436 -14.48480 -14.23338 -13.98037 -13.70268 -13.50639 -13.30656 -13.18796 -12.95957 -12.92780 -12.59152 -12.43345 -12.40659 -12.35263 -12.11910 -12.04084 -11.80535 -11.79511 -11.49685 -11.24975 -10.41217 -10.35493 -10.07023 -10.00798 -9.97101 -9.36750 -8.45975 -5.94541 0.21153 1.33143 1.40520 1.42776 1.53332 1.66819 2.03561 2.06719 2.13940 2.31025 3.01064 3.21546 3.48061 3.50532 3.64154 3.68662 3.88795 3.92246 3.99820 4.12110 4.18704 4.32672 4.33368 4.47666 4.49679 4.52199 4.57158 4.62141 4.66477 4.71914 4.82824 4.87175 4.89423 4.92671 4.95322 5.08880 5.23425 5.26868 5.28116 5.41700 5.56810 5.75663 5.85261 6.07786 6.34065 6.35559 6.61156 7.00160 7.11537 7.13571 7.57341 8.13013 8.70978 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.001563 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.078556 B =17911.951605 C =18703.919978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.140 4.140 4 C 0.119 3.881 5 N -0.260 5.260 6 N -0.294 5.294 7 C -0.009 4.009 8 C -0.175 4.175 9 C -0.063 4.063 10 C 0.587 3.413 11 O -0.570 6.570 12 N -0.696 5.696 13 C 0.131 3.869 14 C 0.058 3.942 15 N -0.686 5.686 16 C 0.068 3.932 17 C 0.435 3.565 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.216 0.784 38 H 0.193 0.807 39 H 0.419 0.581 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.346 0.654 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.398 0.602 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 25.704 -16.172 30.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 C -0.197 4.197 4 C 0.000 4.000 5 N -0.048 5.048 6 N -0.127 5.127 7 C -0.184 4.184 8 C -0.204 4.204 9 C -0.191 4.191 10 C 0.373 3.627 11 O -0.450 6.450 12 N -0.349 5.349 13 C 0.007 3.993 14 C -0.072 4.072 15 N -0.319 5.319 16 C -0.064 4.064 17 C 0.222 3.778 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.232 0.768 38 H 0.210 0.790 39 H 0.257 0.743 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.165 0.835 45 H 0.092 0.908 46 H 0.127 0.873 47 H 0.232 0.768 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.465 26.457 -16.097 31.067 hybrid contribution 1.407 -1.807 0.281 2.307 sum -1.058 24.649 -15.816 29.306 Atomic orbital electron populations 1.21714 0.92218 1.02417 1.03347 1.21350 0.97852 0.96614 0.96218 1.21789 1.00329 0.94833 1.02751 1.22364 0.72561 1.04034 1.01092 1.45889 1.07863 1.16385 1.34618 1.73216 1.02198 1.18124 1.19113 1.24188 0.94816 0.97684 1.01761 1.22705 0.94459 0.99752 1.03437 1.21472 0.93427 0.96716 1.07488 1.17111 0.85714 0.81211 0.78623 1.90802 1.15641 1.74449 1.64062 1.45340 1.12223 1.24694 1.52625 1.21114 0.96521 0.85490 0.96173 1.22074 0.95311 0.91838 0.97930 1.59874 1.26487 1.09929 1.35624 1.21523 0.93087 0.92605 0.99173 1.20952 0.87100 0.86325 0.83397 1.90501 1.17343 1.77438 1.65937 1.41914 1.10355 1.22046 1.46626 1.19628 0.94688 1.01831 1.30429 0.90423 1.26008 0.95658 1.01748 0.97718 1.69652 1.04463 1.39252 1.42548 0.85009 0.77810 0.77375 0.78267 1.19746 1.19433 1.19875 0.90732 0.92720 0.91355 0.92816 0.94073 0.91339 0.91789 0.88153 0.87029 0.76758 0.78985 0.74260 0.91905 0.91928 0.92181 0.88745 0.83492 0.90828 0.87267 0.76834 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.19 71.98 0.66 -1.17 16 2 C -0.10 -1.66 3.13 -10.79 -0.03 -1.69 16 3 C -0.14 -2.04 9.05 71.98 0.65 -1.39 16 4 C 0.12 2.08 5.08 86.38 0.44 2.52 16 5 N -0.26 -5.04 2.92 -334.68 -0.98 -6.02 16 6 N -0.29 -5.44 11.21 -57.14 -0.64 -6.08 16 7 C -0.01 -0.13 12.03 85.18 1.02 0.90 16 8 C -0.17 -2.20 10.50 22.66 0.24 -1.96 16 9 C -0.06 -1.18 6.96 40.79 0.28 -0.89 16 10 C 0.59 12.58 7.79 86.59 0.67 13.25 16 11 O -0.57 -16.06 14.80 -4.13 -0.06 -16.12 16 12 N -0.70 -11.13 5.53 -466.63 -2.58 -13.71 16 13 C 0.13 2.62 5.94 86.38 0.51 3.13 16 14 C 0.06 1.06 5.80 86.31 0.50 1.56 16 15 N -0.69 -19.75 6.13 -517.94 -3.17 -22.92 16 16 C 0.07 2.14 6.17 85.56 0.53 2.67 16 17 C 0.43 20.13 7.82 87.66 0.69 20.82 16 18 O -0.63 -34.40 15.78 -3.04 -0.05 -34.45 16 19 N -0.57 -28.73 5.29 -306.99 -1.62 -30.35 16 20 C -0.34 -18.94 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -48.77 13.05 21.66 0.28 -48.49 16 24 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 0.73 7.18 -2.39 -0.02 0.71 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.10 2.02 6.52 -2.39 -0.02 2.01 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.22 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.19 0.95 7.62 -2.91 -0.02 0.92 16 39 H 0.42 3.81 7.55 -92.71 -0.70 3.11 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.35 10.69 8.43 -89.69 -0.76 9.93 16 45 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.11 2.99 8.14 -2.39 -0.02 2.98 16 47 H 0.40 18.73 7.90 -92.70 -0.73 18.00 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -75.06 404.79 -0.54 -75.60 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -1.19 Total: 38.43 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 7.45 Total: 19.48 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -8.71 Total: -127.57 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.11 Total: -50.57 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.06 -0.54 -75.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128455645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.097 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds