Wall clock time and date at job start Tue Mar 31 2020 20:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47115 * 2 1 4 4 C 1.42902 * 114.00091 * 177.77110 * 3 2 1 5 5 H 1.09002 * 109.46949 * 30.58312 * 4 3 2 6 6 C 1.52995 * 109.47061 * 150.58272 * 4 3 2 7 7 C 1.52994 * 109.47686 * 294.74916 * 6 4 3 8 8 C 1.50699 * 109.46720 * 270.58332 * 4 3 2 9 9 O 1.21274 * 120.00313 * 355.00393 * 8 4 3 10 10 N 1.34774 * 119.99558 * 174.99616 * 8 4 3 11 11 C 1.46504 * 120.00061 * 179.97438 * 10 8 4 12 12 H 1.09003 * 110.63839 * 36.69429 * 11 10 8 13 13 C 1.54322 * 110.72403 * 273.54967 * 11 10 8 14 14 N 1.47017 * 107.27420 * 219.44307 * 13 11 10 15 15 C 1.36933 * 125.65106 * 178.90728 * 14 13 11 16 16 H 1.07996 * 120.00504 * 180.02562 * 15 14 13 17 17 C 1.38817 * 119.99751 * 0.02562 * 15 14 13 18 18 N 1.31625 * 120.00064 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47017 * 60.00335 * 19 17 15 21 21 H 1.48500 * 109.47417 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47466 * 299.99959 * 19 17 15 23 23 C 1.47425 * 108.69914 * 358.93845 * 14 13 11 24 24 C 1.54902 * 104.83406 * 24.13353 * 23 14 13 25 25 H 1.09003 * 111.00046 * 204.91470 * 24 23 14 26 26 N 1.46501 * 111.00816 * 81.06137 * 24 23 14 27 27 C 1.35315 * 125.86401 * 332.52034 * 26 24 23 28 28 C 1.35357 * 106.17036 * 179.90498 * 27 26 24 29 29 N 1.33768 * 106.49670 * 0.34850 * 28 27 26 30 30 N 1.28632 * 108.88850 * 359.77787 * 29 28 27 31 31 H 1.08998 * 109.46940 * 60.00798 * 1 2 3 32 32 H 1.09001 * 109.46573 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47129 * 300.00003 * 1 2 3 34 34 H 1.09002 * 109.47278 * 239.99440 * 2 1 3 35 35 H 1.09002 * 109.46690 * 119.99645 * 2 1 3 36 36 H 1.09000 * 109.47100 * 174.74073 * 6 4 3 37 37 H 1.09005 * 109.46995 * 54.74998 * 6 4 3 38 38 H 1.08996 * 109.47662 * 185.19216 * 7 6 4 39 39 H 1.09005 * 109.46803 * 305.19068 * 7 6 4 40 40 H 1.09000 * 109.47406 * 65.18649 * 7 6 4 41 41 H 0.97004 * 120.00535 * 0.02562 * 10 8 4 42 42 H 1.08997 * 109.87832 * 338.86379 * 13 11 10 43 43 H 1.09005 * 109.87783 * 99.86438 * 13 11 10 44 44 H 0.97002 * 119.99753 * 180.02562 * 18 17 15 45 45 H 1.09000 * 110.36307 * 142.96811 * 23 14 13 46 46 H 1.09003 * 110.36822 * 265.17512 * 23 14 13 47 47 H 1.07997 * 126.91442 * 0.02562 * 27 26 24 48 48 H 1.07998 * 126.75070 * 180.12322 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4300 1.4605 0.0508 5 1 3.8807 0.6006 -0.4448 6 6 3.8652 2.7441 -0.6589 7 6 3.5254 2.6444 -2.1473 8 6 3.8794 1.5042 1.4885 9 8 3.0578 1.5359 2.3800 10 7 5.1944 1.5081 1.7836 11 6 5.6314 1.5512 3.1813 12 1 4.9627 0.9645 3.8112 13 6 5.7152 3.0083 3.6826 14 7 6.9123 3.1103 4.5299 15 6 7.3553 4.2470 5.1519 16 1 8.2503 4.2184 5.7556 17 6 6.6539 5.4360 5.0066 18 7 5.5627 5.4708 4.2713 19 14 7.2586 6.9867 5.8545 20 1 8.6241 7.3145 5.3717 21 1 6.3406 8.1116 5.5426 22 1 7.2920 6.7672 7.3228 23 6 7.5571 1.7864 4.5984 24 6 7.0948 1.0532 3.3145 25 1 7.1290 -0.0280 3.4484 26 7 7.8962 1.4627 2.1585 27 6 8.5172 2.6554 2.0068 28 6 9.1381 2.6069 0.8050 29 7 8.8637 1.4058 0.2839 30 7 8.1259 0.7520 1.1102 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.9402 2.8785 -0.5398 37 1 3.3421 3.5954 -0.2231 38 1 3.9173 3.5175 -2.6689 39 1 3.9736 1.7417 -2.5626 40 1 2.4432 2.6026 -2.2710 41 1 5.8516 1.4830 1.0706 42 1 5.8023 3.6875 2.8345 43 1 4.8253 3.2524 4.2629 44 1 5.0728 6.3018 4.1695 45 1 8.6419 1.8927 4.6048 46 1 7.2243 1.2477 5.4857 47 1 8.5188 3.4793 2.7050 48 1 9.7344 3.3861 0.3538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128770434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:33 Heat of formation + Delta-G solvation = 51.298080 kcal Electronic energy + Delta-G solvation = -31333.377468 eV Core-core repulsion = 27234.129458 eV Total energy + Delta-G solvation = -4099.248010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.96881 -40.01880 -38.37371 -37.14531 -34.36093 -33.89597 -33.25890 -31.74972 -30.88480 -30.56022 -29.11374 -27.96216 -26.62593 -24.82590 -23.00404 -22.66454 -22.22695 -22.05231 -20.86364 -20.20556 -19.83662 -17.96901 -17.44134 -17.01174 -16.90305 -15.84191 -15.42584 -15.28984 -14.87029 -14.72008 -14.47617 -14.16350 -14.10023 -13.96826 -13.75145 -13.52236 -13.08308 -12.65768 -12.50257 -12.44163 -12.36143 -12.10599 -11.82762 -11.79383 -11.41851 -11.40292 -11.34921 -11.13299 -11.09999 -10.85590 -10.78750 -10.65168 -10.56702 -10.31388 -10.26638 -9.99617 -9.78501 -9.10755 -8.98010 -8.84715 -8.70815 -7.15867 -5.91887 -3.31920 1.97534 2.61042 2.80822 2.90967 3.19822 3.29056 3.34225 3.36563 3.68573 4.28846 4.48279 4.70798 4.75594 4.84267 4.87130 4.95696 5.01230 5.06487 5.18077 5.21021 5.30369 5.31378 5.41927 5.45192 5.57600 5.59413 5.69467 5.71637 5.77155 5.82325 5.86702 5.92388 6.02867 6.04096 6.09339 6.12799 6.17132 6.22663 6.51401 6.54998 7.01797 7.04516 7.29288 7.31977 7.61167 7.69283 7.96838 8.43918 8.83692 8.94811 9.54877 10.14247 11.17642 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.004261 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.667375 B = 6569.502257 C = 7718.282539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.080 3.920 5 H 0.082 0.918 6 C -0.116 4.116 7 C -0.146 4.146 8 C 0.492 3.508 9 O -0.519 6.519 10 N -0.715 5.715 11 C 0.111 3.889 12 H 0.109 0.891 13 C 0.169 3.831 14 N -0.601 5.601 15 C -0.248 4.248 16 H 0.082 0.918 17 C 0.004 3.996 18 N -0.911 5.911 19 Si 0.914 3.086 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.128 3.872 24 C 0.114 3.886 25 H 0.119 0.881 26 N -0.276 5.276 27 C -0.004 4.004 28 C -0.076 4.076 29 N -0.277 5.277 30 N -0.112 5.112 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.397 0.603 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.257 0.743 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.204 0.796 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 -9.390 -9.026 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.018 3.982 5 H 0.100 0.900 6 C -0.154 4.154 7 C -0.203 4.203 8 C 0.277 3.723 9 O -0.393 6.393 10 N -0.370 5.370 11 C 0.004 3.996 12 H 0.127 0.873 13 C 0.044 3.956 14 N -0.329 5.329 15 C -0.376 4.376 16 H 0.100 0.900 17 C -0.194 4.194 18 N -0.556 5.556 19 Si 0.744 3.256 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.210 1.210 23 C 0.000 4.000 24 C 0.010 3.990 25 H 0.137 0.863 26 N -0.069 5.069 27 C -0.155 4.155 28 C -0.232 4.232 29 N -0.143 5.143 30 N -0.092 5.092 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.232 0.768 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.221 0.779 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.508 -10.338 -9.067 13.978 hybrid contribution 0.920 1.671 0.914 2.115 sum -1.589 -8.666 -8.153 12.004 Atomic orbital electron populations 1.21700 0.93558 1.02027 1.03243 1.22551 0.95909 0.83824 0.99873 1.88004 1.18428 1.26435 1.94129 1.22031 0.83559 1.00504 0.92113 0.89998 1.21565 1.01538 0.96147 0.96143 1.21701 1.02277 1.01705 0.94611 1.21299 0.82401 0.76457 0.92152 1.90716 1.52292 1.47811 1.48524 1.45928 1.07320 1.75497 1.08242 1.22845 0.91733 1.01783 0.83241 0.87344 1.21625 0.90825 0.87965 0.95211 1.44471 1.26772 1.03841 1.57812 1.18939 1.08216 0.85087 1.25328 0.89973 1.24851 0.97034 0.98031 0.99483 1.69939 1.17531 1.26481 1.41650 0.86183 0.77802 0.82444 0.79181 1.20910 1.21503 1.20990 1.21925 0.98016 0.88336 0.91685 1.23335 0.90493 1.00930 0.84248 0.86326 1.47267 1.33574 1.11149 1.14931 1.24215 0.98149 0.92052 1.01102 1.23548 1.06901 0.97628 0.95166 1.75002 1.11393 1.05180 1.22756 1.78203 1.17049 1.20682 0.93219 0.91986 0.91275 0.91513 0.93538 0.93171 0.90338 0.89981 0.92201 0.92860 0.91893 0.76777 0.92374 0.92276 0.93215 0.92281 0.92869 0.77915 0.79848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.66 6.44 37.16 0.24 0.90 16 3 O -0.35 -5.26 9.17 -55.09 -0.51 -5.76 16 4 C 0.08 1.13 2.51 -27.89 -0.07 1.06 16 5 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 6 C -0.12 -1.55 5.61 -26.74 -0.15 -1.70 16 7 C -0.15 -1.56 9.76 37.15 0.36 -1.20 16 8 C 0.49 8.61 7.12 -10.99 -0.08 8.53 16 9 O -0.52 -11.04 16.23 -14.30 -0.23 -11.28 16 10 N -0.72 -11.89 4.98 -52.03 -0.26 -12.15 16 11 C 0.11 1.95 3.11 -66.09 -0.21 1.74 16 12 H 0.11 1.92 7.69 -51.93 -0.40 1.52 16 13 C 0.17 3.74 4.74 -3.07 -0.01 3.72 16 14 N -0.60 -12.99 2.23 -170.08 -0.38 -13.36 16 15 C -0.25 -6.03 10.06 -15.06 -0.15 -6.18 16 16 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 17 C 0.00 0.11 5.49 -17.43 -0.10 0.01 16 18 N -0.91 -24.91 10.31 55.49 0.57 -24.34 16 19 Si 0.91 20.48 29.55 -169.99 -5.02 15.46 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.13 2.16 6.22 -2.53 -0.02 2.14 16 24 C 0.11 1.74 4.06 -65.78 -0.27 1.47 16 25 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 26 N -0.28 -4.42 2.46 -52.68 -0.13 -4.55 16 27 C 0.00 -0.06 10.01 -17.04 -0.17 -0.23 16 28 C -0.08 -1.16 12.05 -17.74 -0.21 -1.37 16 29 N -0.28 -4.63 12.41 30.24 0.38 -4.26 16 30 N -0.11 -1.86 12.18 60.35 0.74 -1.13 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.05 7.76 -51.93 -0.40 0.65 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 41 H 0.40 6.33 6.41 -40.82 -0.26 6.07 16 42 H 0.06 1.45 7.27 -51.93 -0.38 1.07 16 43 H 0.06 1.56 7.51 -51.93 -0.39 1.17 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.06 0.96 7.87 -51.93 -0.41 0.55 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.20 3.71 6.80 -52.49 -0.36 3.35 16 48 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -29.99 390.98 -7.01 -37.01 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -7.61 Total: 10.68 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -0.45 Total: 7.78 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.92 Total: -59.78 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.74 Total: -17.04 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.99 -7.01 -37.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128770434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.305 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds