Wall clock time and date at job start Tue Mar 31 2020 20:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47290 * 2 1 4 4 C 1.42905 * 114.00207 * 175.70920 * 3 2 1 5 5 H 1.09002 * 109.46745 * 329.36851 * 4 3 2 6 6 C 1.53001 * 109.47032 * 209.37166 * 4 3 2 7 7 C 1.53001 * 109.47142 * 65.26775 * 6 4 3 8 8 C 1.50696 * 109.47372 * 89.36671 * 4 3 2 9 9 O 1.21277 * 120.00199 * 5.00634 * 8 4 3 10 10 N 1.34779 * 119.99848 * 184.99871 * 8 4 3 11 11 C 1.46501 * 119.99924 * 179.97438 * 10 8 4 12 12 H 1.09005 * 110.63977 * 36.69649 * 11 10 8 13 13 C 1.54324 * 110.72434 * 273.55234 * 11 10 8 14 14 N 1.47020 * 107.27100 * 219.44276 * 13 11 10 15 15 C 1.36940 * 125.65029 * 178.90128 * 14 13 11 16 16 H 1.07995 * 120.00401 * 186.99748 * 15 14 13 17 17 C 1.38815 * 119.99419 * 6.99868 * 15 14 13 18 18 N 1.31610 * 120.00194 * 7.28856 * 17 15 14 19 19 Si 1.86800 * 119.99589 * 187.29452 * 17 15 14 20 20 H 1.48494 * 109.47408 * 94.95960 * 19 17 15 21 21 H 1.48500 * 109.47012 * 214.96275 * 19 17 15 22 22 H 1.48508 * 109.47049 * 334.96180 * 19 17 15 23 23 C 1.47421 * 108.70337 * 358.94148 * 14 13 11 24 24 C 1.54909 * 104.83543 * 24.12738 * 23 14 13 25 25 H 1.09003 * 111.00905 * 204.91930 * 24 23 14 26 26 N 1.46500 * 111.00430 * 81.06569 * 24 23 14 27 27 C 1.35312 * 125.86839 * 332.52080 * 26 24 23 28 28 C 1.35353 * 106.17309 * 179.90781 * 27 26 24 29 29 N 1.33766 * 106.49886 * 0.34908 * 28 27 26 30 30 N 1.28642 * 108.88547 * 359.78084 * 29 28 27 31 31 H 1.08997 * 109.47667 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47306 * 299.99995 * 1 2 3 33 33 H 1.09007 * 109.47538 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47167 * 120.00582 * 2 1 3 35 35 H 1.09006 * 109.46629 * 239.99753 * 2 1 3 36 36 H 1.08994 * 109.46845 * 185.27117 * 6 4 3 37 37 H 1.09003 * 109.46638 * 305.27072 * 6 4 3 38 38 H 1.09000 * 109.46852 * 174.80968 * 7 6 4 39 39 H 1.08995 * 109.47069 * 294.81233 * 7 6 4 40 40 H 1.09005 * 109.46937 * 54.81695 * 7 6 4 41 41 H 0.96995 * 120.00150 * 0.02562 * 10 8 4 42 42 H 1.09003 * 109.87687 * 338.85988 * 13 11 10 43 43 H 1.08998 * 109.87917 * 99.86878 * 13 11 10 44 44 H 0.97005 * 119.99754 * 179.97438 * 18 17 15 45 45 H 1.09008 * 110.37026 * 142.96468 * 23 14 13 46 46 H 1.09001 * 110.36676 * 265.17895 * 23 14 13 47 47 H 1.07996 * 126.91122 * 0.02562 * 27 26 24 48 48 H 1.07998 * 126.74995 * 180.12694 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4274 1.4613 0.0977 5 1 3.8206 0.6221 0.6716 6 6 3.7868 2.7723 0.7998 7 6 3.2896 2.7292 2.2461 8 6 4.0285 1.4503 -1.2842 9 8 3.3072 1.4459 -2.2592 10 7 5.3676 1.4455 -1.4366 11 6 5.9519 1.4343 -2.7800 12 1 5.3568 2.0406 -3.4629 13 6 6.0838 -0.0105 -3.3061 14 7 7.3645 -0.0990 -4.0225 15 6 7.8678 -1.2227 -4.6220 16 1 8.8691 -1.2166 -5.0265 17 6 7.0907 -2.3696 -4.7097 18 7 5.8256 -2.3365 -4.3485 19 14 7.8408 -3.9599 -5.3403 20 1 8.2959 -4.7825 -4.1909 21 1 6.8234 -4.7134 -6.1164 22 1 8.9995 -3.6479 -6.2152 23 6 8.0178 1.2221 -3.9879 24 6 7.4230 1.9262 -2.7429 25 1 7.4751 3.0102 -2.8447 26 7 8.0941 1.4831 -1.5183 27 6 8.6909 0.2833 -1.3310 28 6 9.1793 0.2981 -0.0688 29 7 8.8549 1.4875 0.4502 30 7 8.2124 2.1662 -0.4338 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 0.8899 35 1 1.8932 -0.5139 -0.8900 36 1 4.8686 2.9043 0.7912 37 1 3.3149 3.6050 0.2781 38 1 3.6252 3.6227 2.7725 39 1 2.2004 2.6899 2.2549 40 1 3.6892 1.8442 2.7414 41 1 5.9445 1.4488 -0.6568 42 1 6.0769 -0.7111 -2.4710 43 1 5.2606 -0.2345 -3.9845 44 1 5.2825 -3.1380 -4.4101 45 1 9.0967 1.1092 -3.8805 46 1 7.7841 1.7847 -4.8918 47 1 8.7645 -0.5231 -2.0456 48 1 9.7210 -0.4958 0.4239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128770435.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:36 Heat of formation + Delta-G solvation = 31.526869 kcal Electronic energy + Delta-G solvation = -31296.903066 eV Core-core repulsion = 27196.797712 eV Total energy + Delta-G solvation = -4100.105354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.26694 -41.39395 -39.76483 -38.48342 -35.89607 -35.19891 -34.52595 -33.44428 -31.85284 -31.81868 -30.70476 -29.42664 -27.94737 -26.50597 -24.19646 -23.87753 -23.52660 -23.18202 -22.28504 -21.55510 -21.40541 -19.43592 -18.77281 -18.61997 -18.12263 -17.16783 -16.92152 -16.64555 -16.31616 -16.00661 -15.80219 -15.67967 -15.35068 -15.20288 -14.97895 -14.94668 -14.56740 -14.02981 -13.92787 -13.55353 -13.42087 -13.30102 -13.12164 -13.02276 -12.88812 -12.82413 -12.73323 -12.48544 -12.35506 -12.33783 -12.08381 -12.07652 -11.90024 -11.82392 -11.80301 -11.49699 -11.14140 -10.78613 -10.40337 -10.26513 -10.23560 -9.01508 -7.87732 -5.29789 0.65196 1.30886 1.42015 1.47965 1.49103 1.57511 1.65014 1.86418 2.45714 2.58969 3.11757 3.29717 3.37235 3.47349 3.57568 3.74382 3.78558 3.80544 3.91211 4.07491 4.19163 4.22371 4.26146 4.28277 4.40326 4.42545 4.45565 4.49232 4.67014 4.75361 4.79302 4.79591 4.84037 4.98089 5.00577 5.05636 5.11658 5.20430 5.30570 5.37459 5.40143 5.48488 5.64894 5.71493 5.93905 6.08093 6.31151 6.97580 7.05311 7.54600 7.66884 8.26712 9.19523 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.004578 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.094872 B = 6114.674164 C = 7945.107872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 O -0.366 6.366 4 C 0.080 3.920 5 H 0.097 0.903 6 C -0.109 4.109 7 C -0.142 4.142 8 C 0.487 3.513 9 O -0.563 6.563 10 N -0.706 5.706 11 C 0.121 3.879 12 H 0.109 0.891 13 C 0.186 3.814 14 N -0.612 5.612 15 C -0.238 4.238 16 H 0.096 0.904 17 C -0.055 4.055 18 N -0.947 5.947 19 Si 0.972 3.028 20 H -0.287 1.287 21 H -0.305 1.305 22 H -0.263 1.263 23 C 0.126 3.874 24 C 0.129 3.871 25 H 0.158 0.842 26 N -0.275 5.275 27 C -0.020 4.020 28 C -0.063 4.063 29 N -0.289 5.289 30 N -0.110 5.110 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.023 0.977 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.403 0.597 42 H 0.005 0.995 43 H 0.022 0.978 44 H 0.244 0.756 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.187 0.813 48 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 8.067 11.466 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 O -0.284 6.284 4 C 0.019 3.981 5 H 0.114 0.886 6 C -0.147 4.147 7 C -0.199 4.199 8 C 0.273 3.727 9 O -0.441 6.441 10 N -0.361 5.361 11 C 0.014 3.986 12 H 0.127 0.873 13 C 0.060 3.940 14 N -0.339 5.339 15 C -0.366 4.366 16 H 0.114 0.886 17 C -0.249 4.249 18 N -0.595 5.595 19 Si 0.801 3.199 20 H -0.214 1.214 21 H -0.233 1.233 22 H -0.187 1.187 23 C 0.000 4.000 24 C 0.026 3.974 25 H 0.176 0.824 26 N -0.068 5.068 27 C -0.172 4.172 28 C -0.220 4.220 29 N -0.155 5.155 30 N -0.089 5.089 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.240 0.760 42 H 0.023 0.977 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.204 0.796 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.418 9.386 11.402 14.836 hybrid contribution 0.562 -2.651 -1.239 2.979 sum -0.856 6.735 10.163 12.222 Atomic orbital electron populations 1.21701 0.91718 1.03457 1.03004 1.22750 0.97396 0.82911 0.99894 1.87948 1.18635 1.27668 1.94108 1.22211 0.82999 1.02413 0.90522 0.88557 1.21590 1.02000 0.93680 0.97454 1.21681 1.01773 1.02983 0.93447 1.22089 0.82150 0.75043 0.93372 1.90702 1.61040 1.49837 1.42502 1.45858 1.06802 1.74992 1.08403 1.22543 0.92157 0.98703 0.85230 0.87325 1.21152 0.88753 0.90258 0.93875 1.44614 1.19471 1.06224 1.63636 1.19408 0.97979 0.88239 1.30953 0.88592 1.25600 0.95835 1.01569 1.01936 1.70191 1.06811 1.27879 1.54591 0.85155 0.77245 0.79788 0.77702 1.21409 1.23259 1.18710 1.22130 0.97803 0.86521 0.93536 1.23322 0.90492 1.02414 0.81188 0.82418 1.47309 1.36187 1.11266 1.12064 1.24079 1.00665 0.91684 1.00777 1.24004 1.06604 0.98048 0.93302 1.75024 1.12290 1.05149 1.23068 1.78201 1.19136 1.20987 0.90546 0.93063 0.90499 0.89296 0.91228 0.95863 0.89423 0.90973 0.90601 0.92195 0.92039 0.76049 0.97695 0.95941 0.94649 0.90779 0.90847 0.79592 0.76971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 10.28 71.98 0.74 -2.31 16 2 C 0.05 1.26 6.51 71.98 0.47 1.73 16 3 O -0.37 -10.97 9.17 -129.99 -1.19 -12.16 16 4 C 0.08 2.23 2.51 29.85 0.07 2.31 16 5 H 0.10 2.40 7.73 -2.39 -0.02 2.38 16 6 C -0.11 -2.40 5.61 30.60 0.17 -2.22 16 7 C -0.14 -2.43 9.76 71.98 0.70 -1.73 16 8 C 0.49 17.32 7.12 87.66 0.62 17.94 16 9 O -0.56 -25.14 16.23 15.97 0.26 -24.88 16 10 N -0.71 -23.26 4.98 -436.91 -2.17 -25.44 16 11 C 0.12 4.25 3.11 46.18 0.14 4.40 16 12 H 0.11 3.93 7.69 -2.38 -0.02 3.91 16 13 C 0.19 8.51 4.80 86.73 0.42 8.92 16 14 N -0.61 -26.47 2.23 -691.99 -1.54 -28.01 16 15 C -0.24 -11.50 10.04 84.03 0.84 -10.66 16 16 H 0.10 4.33 7.84 -2.91 -0.02 4.30 16 17 C -0.06 -2.89 5.45 84.86 0.46 -2.43 16 18 N -0.95 -54.55 10.49 21.65 0.23 -54.32 16 19 Si 0.97 42.61 29.56 68.60 2.03 44.64 16 20 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.31 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 C 0.13 4.00 6.22 86.86 0.54 4.54 16 24 C 0.13 3.66 4.06 46.38 0.19 3.85 16 25 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16 26 N -0.27 -8.10 2.46 -320.58 -0.79 -8.89 16 27 C -0.02 -0.63 10.01 83.49 0.84 0.21 16 28 C -0.06 -1.73 12.05 83.73 1.01 -0.72 16 29 N -0.29 -8.77 12.41 -58.26 -0.72 -9.50 16 30 N -0.11 -3.30 12.18 37.02 0.45 -2.85 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.07 1.53 7.99 -2.39 -0.02 1.51 16 35 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.09 1.81 7.76 -2.39 -0.02 1.79 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.08 7.97 -2.39 -0.02 1.06 16 40 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.40 12.28 6.41 -92.71 -0.59 11.68 16 42 H 0.00 0.25 7.82 -2.39 -0.02 0.23 16 43 H 0.02 1.27 6.97 -2.39 -0.02 1.25 16 44 H 0.24 14.04 8.31 -92.70 -0.77 13.27 16 45 H 0.07 2.19 7.87 -2.38 -0.02 2.17 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.19 6.46 6.80 -2.91 -0.02 6.45 16 48 H 0.21 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -68.35 391.05 4.13 -64.21 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.37 Total: 33.37 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 7.22 Total: 23.82 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -4.55 Total: -129.00 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.93 Total: -37.04 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -68.35 4.13 -64.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128770435.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.740 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds