Wall clock time and date at job start Tue Mar 31 2020 20:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47371 * 2 1 4 4 C 1.52995 * 109.47618 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47027 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99740 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47080 * 180.02562 * 6 5 4 8 8 O 1.21272 * 119.99952 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99863 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99607 * 180.02562 * 9 7 6 11 11 H 1.08991 * 110.78203 * 31.76374 * 10 9 7 12 12 C 1.54323 * 110.71845 * 268.51954 * 10 9 7 13 13 N 1.47027 * 107.27082 * 219.44817 * 12 10 9 14 14 C 1.36939 * 125.64582 * 178.90131 * 13 12 10 15 15 H 1.08001 * 119.99660 * 180.02562 * 14 13 12 16 16 C 1.38808 * 120.00131 * 0.02562 * 14 13 12 17 17 N 1.31623 * 120.00119 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00042 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47018 * 60.00102 * 18 16 14 20 20 H 1.48493 * 109.47091 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46799 * 300.00274 * 18 16 14 22 22 C 1.47419 * 108.70268 * 358.93878 * 13 12 10 23 23 C 1.54905 * 104.83334 * 24.13300 * 22 13 12 24 24 H 1.09007 * 111.03992 * 204.90016 * 23 22 13 25 25 N 1.46500 * 111.00683 * 81.06150 * 23 22 13 26 26 C 1.35312 * 125.86582 * 332.80197 * 25 23 22 27 27 C 1.35359 * 106.17441 * 179.77310 * 26 25 23 28 28 N 1.33772 * 106.49554 * 0.22938 * 27 26 25 29 29 N 1.28640 * 108.88426 * 359.97438 * 28 27 26 30 30 H 1.08994 * 109.47379 * 299.99744 * 1 2 3 31 31 H 1.08997 * 109.47617 * 60.00129 * 1 2 3 32 32 H 1.09007 * 109.47214 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47079 * 240.00007 * 2 1 3 34 34 H 1.08994 * 109.47261 * 120.00218 * 2 1 3 35 35 H 1.09000 * 109.47094 * 59.99265 * 3 2 1 36 36 H 1.09007 * 109.46827 * 300.00352 * 3 2 1 37 37 H 1.08997 * 109.47010 * 59.99927 * 4 3 2 38 38 H 1.09003 * 109.46710 * 300.00255 * 4 3 2 39 39 H 1.09002 * 109.47076 * 60.00168 * 6 5 4 40 40 H 1.09007 * 109.47613 * 300.00238 * 6 5 4 41 41 H 0.97006 * 119.99850 * 359.97438 * 9 7 6 42 42 H 1.08995 * 109.88326 * 338.86336 * 12 10 9 43 43 H 1.09002 * 109.87943 * 100.02982 * 12 10 9 44 44 H 0.96993 * 119.99704 * 179.97438 * 17 16 14 45 45 H 1.08996 * 110.37153 * 265.29327 * 22 13 12 46 46 H 1.09004 * 110.36502 * 142.96724 * 22 13 12 47 47 H 1.08002 * 126.91567 * 0.04325 * 26 25 23 48 48 H 1.07994 * 126.74720 * 180.25253 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0462 2.7898 -0.0012 6 6 5.4707 2.9027 -0.0013 7 6 5.8593 4.3587 -0.0013 8 8 5.0009 5.2154 -0.0008 9 7 7.1608 4.7089 -0.0019 10 6 7.5385 6.1244 -0.0013 11 1 6.8014 6.7210 0.5358 12 6 7.7144 6.6430 -1.4441 13 7 8.8779 7.5420 -1.4460 14 6 9.3812 8.1935 -2.5402 15 1 10.2442 8.8346 -2.4372 16 6 8.7824 8.0298 -3.7817 17 7 7.7303 7.2488 -3.9071 18 14 9.4695 8.9180 -5.2745 19 1 10.8762 8.4975 -5.4966 20 1 8.6564 8.5789 -6.4699 21 1 9.4217 10.3842 -5.0435 22 6 9.4133 7.6250 -0.0749 23 6 8.9512 6.3153 0.6112 24 1 8.8946 6.4391 1.6928 25 7 9.8318 5.1988 0.2587 26 6 10.5545 5.0881 -0.8799 27 6 11.2220 3.9140 -0.7901 28 7 10.8755 3.3687 0.3813 29 7 10.0488 4.1534 0.9775 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.9329 0.9288 -0.8908 38 1 3.9336 0.9285 0.8891 39 1 5.8735 2.4188 -0.8911 40 1 5.8736 2.4195 0.8889 41 1 7.8475 4.0236 -0.0019 42 1 7.8914 5.8063 -2.1198 43 1 6.8232 7.1895 -1.7528 44 1 7.3117 7.1348 -4.7746 45 1 8.9994 8.4906 0.4422 46 1 10.5018 7.6789 -0.0954 47 1 10.5945 5.7963 -1.6943 48 1 11.9011 3.4993 -1.5203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128851382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:19 Heat of formation + Delta-G solvation = 28.880620 kcal Electronic energy + Delta-G solvation = -29947.808140 eV Core-core repulsion = 25847.588036 eV Total energy + Delta-G solvation = -4100.220104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.25200 -41.13724 -39.60009 -38.65971 -35.87145 -35.77912 -34.86959 -33.45171 -31.85216 -31.21343 -30.31579 -29.39212 -28.08291 -26.48198 -24.24970 -24.05177 -23.50081 -22.60946 -22.02637 -21.52307 -21.46706 -19.31449 -18.62932 -18.49901 -17.80476 -17.58229 -16.92209 -16.83490 -16.47636 -16.26114 -15.91031 -15.67368 -15.56672 -15.20996 -14.96332 -14.83213 -14.41966 -14.02763 -13.95294 -13.89815 -13.74423 -13.34067 -13.08594 -12.88362 -12.82402 -12.70701 -12.54717 -12.46292 -12.27121 -12.09255 -11.98543 -11.90710 -11.87869 -11.82258 -11.54485 -11.15165 -11.00673 -10.75077 -10.73131 -10.25467 -10.21696 -9.00658 -7.86515 -5.25783 0.66614 1.30754 1.44413 1.49931 1.51411 1.57495 1.65134 1.70695 2.47259 2.83014 3.15719 3.34195 3.40360 3.51292 3.63296 3.76731 3.91897 3.96360 4.02549 4.11800 4.15047 4.21289 4.22797 4.26879 4.40277 4.44064 4.44567 4.47461 4.67222 4.69036 4.81000 4.85357 4.89335 4.93383 5.01524 5.05031 5.22419 5.31650 5.33488 5.42035 5.43575 5.48233 5.68107 5.73658 6.00667 6.09076 6.32260 7.00158 7.06316 7.55627 7.69090 8.28536 9.21846 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.003035 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.260844 B = 9223.803905 C =10801.390438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.054 3.946 5 O -0.397 6.397 6 C 0.052 3.948 7 C 0.511 3.489 8 O -0.563 6.563 9 N -0.706 5.706 10 C 0.121 3.879 11 H 0.113 0.887 12 C 0.188 3.812 13 N -0.614 5.614 14 C -0.236 4.236 15 H 0.096 0.904 16 C -0.057 4.057 17 N -0.947 5.947 18 Si 0.973 3.027 19 H -0.271 1.271 20 H -0.305 1.305 21 H -0.280 1.280 22 C 0.127 3.873 23 C 0.128 3.872 24 H 0.158 0.842 25 N -0.274 5.274 26 C -0.018 4.018 27 C -0.063 4.063 28 N -0.291 5.291 29 N -0.111 5.111 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.404 0.596 42 H 0.024 0.976 43 H 0.006 0.994 44 H 0.244 0.756 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.187 0.813 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -12.431 9.674 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.157 4.157 4 C -0.022 4.022 5 O -0.316 6.316 6 C -0.028 4.028 7 C 0.299 3.701 8 O -0.441 6.441 9 N -0.359 5.359 10 C 0.014 3.986 11 H 0.131 0.869 12 C 0.061 3.939 13 N -0.342 5.342 14 C -0.365 4.365 15 H 0.113 0.887 16 C -0.251 4.251 17 N -0.595 5.595 18 Si 0.802 3.198 19 H -0.196 1.196 20 H -0.232 1.232 21 H -0.207 1.207 22 C 0.001 3.999 23 C 0.025 3.975 24 H 0.175 0.825 25 N -0.068 5.068 26 C -0.170 4.170 27 C -0.220 4.220 28 N -0.157 5.157 29 N -0.090 5.090 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.240 0.760 42 H 0.043 0.957 43 H 0.024 0.976 44 H 0.053 0.947 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.204 0.796 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.189 -12.367 10.806 16.730 hybrid contribution 0.585 0.941 -2.402 2.645 sum -2.604 -11.427 8.403 14.421 Atomic orbital electron populations 1.21770 0.95105 1.02342 1.01863 1.21418 0.96512 0.94391 1.03027 1.21568 0.92941 0.98577 1.02611 1.22846 0.95735 0.81896 1.01751 1.87972 1.19089 1.28762 1.95754 1.22205 0.83779 0.91931 1.04847 1.20915 0.82100 0.91981 0.75144 1.90707 1.50313 1.53307 1.49778 1.45636 1.07221 1.07809 1.75257 1.22554 0.94843 0.82879 0.98326 0.86940 1.21152 0.89529 0.92657 0.90540 1.44593 1.31991 1.53771 1.03811 1.19341 1.10217 1.21423 0.85480 0.88655 1.25581 0.98215 1.00745 1.00519 1.70171 1.23855 1.42291 1.23175 0.85232 0.77625 0.78235 0.78679 1.19621 1.23222 1.20659 1.22146 0.99442 0.92845 0.85495 1.23363 0.86858 0.84300 1.02989 0.82458 1.47315 1.30273 1.15988 1.13211 1.24074 0.97477 1.02082 0.93352 1.23992 1.05627 0.94562 0.97819 1.75021 1.09922 1.23401 1.07367 1.78201 1.16441 0.94135 1.20219 0.92698 0.93066 0.91428 0.91187 0.90704 0.91784 0.92451 0.92017 0.91128 0.88625 0.87032 0.76017 0.95738 0.97603 0.94652 0.90565 0.90868 0.79626 0.77048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.12 -2.28 5.58 30.59 0.17 -2.10 16 4 C 0.05 1.08 5.94 71.98 0.43 1.50 16 5 O -0.40 -11.75 9.88 -129.94 -1.28 -13.03 16 6 C 0.05 1.36 6.42 71.24 0.46 1.81 16 7 C 0.51 17.97 7.91 87.66 0.69 18.66 16 8 O -0.56 -25.15 16.15 16.03 0.26 -24.89 16 9 N -0.71 -23.07 5.07 -436.92 -2.21 -25.28 16 10 C 0.12 4.23 3.19 46.18 0.15 4.38 16 11 H 0.11 4.01 7.55 -2.39 -0.02 3.99 16 12 C 0.19 8.54 4.75 86.73 0.41 8.95 16 13 N -0.61 -26.45 2.23 -692.01 -1.55 -27.99 16 14 C -0.24 -11.41 10.06 84.03 0.85 -10.57 16 15 H 0.10 4.28 7.83 -2.91 -0.02 4.26 16 16 C -0.06 -2.95 5.49 84.86 0.47 -2.49 16 17 N -0.95 -54.08 10.31 21.65 0.22 -53.85 16 18 Si 0.97 42.70 29.55 68.60 2.03 44.72 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.31 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.13 3.99 6.21 86.85 0.54 4.53 16 23 C 0.13 3.63 4.06 46.38 0.19 3.82 16 24 H 0.16 3.40 8.14 -2.38 -0.02 3.38 16 25 N -0.27 -8.18 2.43 -320.57 -0.78 -8.96 16 26 C -0.02 -0.57 10.01 83.49 0.84 0.27 16 27 C -0.06 -1.79 12.05 83.73 1.01 -0.78 16 28 N -0.29 -9.01 12.41 -58.25 -0.72 -9.73 16 29 N -0.11 -3.40 12.27 37.02 0.45 -2.95 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.40 12.24 6.79 -92.70 -0.63 11.62 16 42 H 0.02 1.27 7.27 -2.39 -0.02 1.25 16 43 H 0.01 0.32 7.51 -2.39 -0.02 0.30 16 44 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.07 2.16 7.86 -2.39 -0.02 2.14 16 47 H 0.19 6.64 6.81 -2.91 -0.02 6.62 16 48 H 0.21 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -69.47 392.96 3.83 -65.63 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.33 Total: 30.98 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: 7.09 Total: 25.35 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -4.59 Total: -128.77 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.02 Total: -37.93 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.47 3.83 -65.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128851382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.514 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds