Wall clock time and date at job start Tue Mar 31 2020 20:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00060 * 2 1 4 4 C 1.53000 * 109.47477 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46559 * 59.99705 * 4 3 2 6 6 C 1.52999 * 109.47173 * 300.00020 * 4 3 2 7 7 C 1.50692 * 109.47499 * 179.97438 * 4 3 2 8 8 O 1.21287 * 120.00060 * 0.02562 * 7 4 3 9 9 N 1.34781 * 120.00219 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00046 * 179.97438 * 9 7 4 11 11 H 1.09005 * 110.63876 * 31.85749 * 10 9 7 12 12 C 1.54315 * 110.87331 * 268.60801 * 10 9 7 13 13 N 1.47017 * 107.27451 * 219.37528 * 12 10 9 14 14 C 1.36937 * 125.65517 * 178.90292 * 13 12 10 15 15 H 1.07993 * 120.00534 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99590 * 0.02630 * 14 13 12 17 17 N 1.31617 * 120.00184 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99863 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47532 * 59.99646 * 18 16 14 20 20 H 1.48503 * 109.46814 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47111 * 299.98887 * 18 16 14 22 22 C 1.47471 * 108.71970 * 358.97486 * 13 12 10 23 23 C 1.54906 * 104.81210 * 24.07007 * 22 13 12 24 24 H 1.09002 * 111.00655 * 204.94912 * 23 22 13 25 25 N 1.46504 * 111.00267 * 81.13587 * 23 22 13 26 26 C 1.35315 * 125.86755 * 329.58450 * 25 23 22 27 27 C 1.35351 * 106.17354 * 180.02562 * 26 25 23 28 28 N 1.33771 * 106.49667 * 359.97438 * 27 26 25 29 29 N 1.28638 * 108.88709 * 359.74002 * 28 27 26 30 30 H 1.09003 * 109.46666 * 60.00937 * 1 2 3 31 31 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47512 * 300.00392 * 1 2 3 33 33 H 1.09004 * 109.47441 * 59.99719 * 3 2 1 34 34 H 1.09004 * 109.47338 * 299.99703 * 3 2 1 35 35 H 1.09002 * 109.46355 * 180.02562 * 5 4 3 36 36 H 1.08993 * 109.47206 * 299.99946 * 5 4 3 37 37 H 1.08997 * 109.47199 * 60.00586 * 5 4 3 38 38 H 1.08995 * 109.46937 * 299.99918 * 6 4 3 39 39 H 1.09002 * 109.46791 * 59.99611 * 6 4 3 40 40 H 1.08995 * 109.47242 * 179.97438 * 6 4 3 41 41 H 0.96999 * 119.99902 * 359.97438 * 9 7 4 42 42 H 1.08998 * 109.88341 * 338.79461 * 12 10 9 43 43 H 1.09007 * 109.88217 * 99.95701 * 12 10 9 44 44 H 0.96998 * 120.00767 * 180.02562 * 17 16 14 45 45 H 1.09008 * 110.34870 * 265.25136 * 22 13 12 46 46 H 1.09001 * 110.40581 * 142.92172 * 22 13 12 47 47 H 1.08004 * 126.91024 * 0.02562 * 26 25 23 48 48 H 1.07990 * 126.74995 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9865 0.4257 1.2502 7 6 4.1484 2.5613 0.0000 8 8 3.4355 3.5426 -0.0004 9 7 5.4888 2.7022 -0.0001 10 6 6.0847 4.0406 -0.0013 11 1 5.4494 4.7445 0.5365 12 6 6.3403 4.5274 -1.4432 13 7 7.6298 5.2334 -1.4434 14 6 8.2295 5.7999 -2.5364 15 1 9.1820 6.2981 -2.4322 16 6 7.6131 5.7335 -3.7784 17 7 6.4526 5.1258 -3.9056 18 14 8.4315 6.5055 -5.2696 19 1 9.7555 5.8708 -5.4919 20 1 7.5766 6.2982 -6.4661 21 1 8.6129 7.9609 -5.0367 22 6 8.1719 5.2295 -0.0719 23 6 7.5095 4.0076 0.6122 24 1 7.4723 4.1379 1.6937 25 7 8.2046 2.7673 0.2591 26 6 8.8509 2.5244 -0.9047 27 6 9.3428 1.2672 -0.8074 28 7 8.9787 0.8088 0.3954 29 7 8.3106 1.7236 1.0049 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 5.0740 0.3387 -1.2476 36 1 3.5441 -0.5706 -1.2483 37 1 3.6661 0.9658 -2.1385 38 1 3.6645 0.9667 2.1399 39 1 3.5431 -0.5701 1.2502 40 1 5.0730 0.3393 1.2504 41 1 6.0590 1.9175 0.0006 42 1 6.3848 3.6742 -2.1201 43 1 5.5456 5.2068 -1.7515 44 1 6.0220 5.0791 -4.7735 45 1 7.8987 6.1487 0.4463 46 1 9.2553 5.1120 -0.0918 47 1 8.9536 3.1981 -1.7425 48 1 9.9170 0.7385 -1.5537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129106098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:28 Heat of formation + Delta-G solvation = 52.649054 kcal Electronic energy + Delta-G solvation = -31478.811967 eV Core-core repulsion = 27379.622540 eV Total energy + Delta-G solvation = -4099.189427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.94258 -40.20874 -38.38510 -37.55429 -34.82501 -34.15418 -33.36227 -31.73530 -30.53059 -28.92201 -27.78071 -27.32786 -27.30843 -25.62331 -24.96750 -23.10020 -22.30491 -22.16518 -20.42301 -20.11514 -19.35507 -17.71326 -17.13120 -16.98710 -16.11262 -15.93979 -15.89219 -15.38163 -15.04545 -14.79664 -14.51298 -14.42044 -14.12824 -13.88602 -13.52243 -13.38066 -13.18650 -13.02862 -12.50012 -12.36679 -12.24415 -12.15300 -11.86618 -11.81823 -11.57949 -11.40640 -11.33938 -11.10771 -11.06691 -10.86259 -10.74988 -10.64312 -10.55184 -10.27600 -10.01584 -9.78675 -9.73183 -9.50627 -8.95789 -8.86922 -8.71516 -7.17189 -5.93829 -3.33316 2.00008 2.63085 2.81857 2.93737 3.12722 3.28128 3.33404 3.35308 3.86599 4.28039 4.51580 4.60938 4.71595 4.80969 4.86023 4.97287 5.08093 5.13015 5.21566 5.25552 5.29552 5.41701 5.50858 5.53941 5.58722 5.61299 5.68564 5.71271 5.76993 5.80688 5.83145 5.85952 5.93364 6.05458 6.14052 6.17920 6.20951 6.25968 6.52476 6.55131 7.03739 7.05301 7.25264 7.30003 7.58665 7.66161 7.94963 8.38251 8.86729 8.93439 9.53345 10.12810 11.15930 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.004219 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.809930 B = 6635.298894 C = 8027.031081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.087 3.913 4 C -0.078 4.078 5 C -0.136 4.136 6 C -0.136 4.136 7 C 0.530 3.470 8 O -0.539 6.539 9 N -0.710 5.710 10 C 0.110 3.890 11 H 0.112 0.888 12 C 0.169 3.831 13 N -0.601 5.601 14 C -0.247 4.247 15 H 0.083 0.917 16 C 0.004 3.996 17 N -0.913 5.913 18 Si 0.914 3.086 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.128 3.872 23 C 0.113 3.887 24 H 0.119 0.881 25 N -0.277 5.277 26 C -0.006 4.006 27 C -0.076 4.076 28 N -0.277 5.277 29 N -0.109 5.109 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.399 0.601 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.257 0.743 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.204 0.796 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -8.027 7.932 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C 0.010 3.990 4 C -0.081 4.081 5 C -0.193 4.193 6 C -0.193 4.193 7 C 0.316 3.684 8 O -0.415 6.415 9 N -0.361 5.361 10 C 0.003 3.997 11 H 0.130 0.870 12 C 0.043 3.957 13 N -0.329 5.329 14 C -0.374 4.374 15 H 0.100 0.900 16 C -0.194 4.194 17 N -0.558 5.558 18 Si 0.744 3.256 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.210 1.210 22 C 0.000 4.000 23 C 0.009 3.991 24 H 0.137 0.863 25 N -0.070 5.070 26 C -0.158 4.158 27 C -0.233 4.233 28 N -0.144 5.144 29 N -0.088 5.088 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.234 0.766 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.221 0.779 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.290 -8.081 9.055 13.240 hybrid contribution 0.678 0.988 -1.959 2.296 sum -4.612 -7.093 7.097 11.043 Atomic orbital electron populations 1.22709 0.81040 1.02472 1.00096 1.87794 1.19532 1.27902 1.95508 1.22216 0.91175 0.84013 1.01609 1.20680 0.94973 0.93374 0.99113 1.21782 1.01246 1.00835 0.95453 1.21790 1.01528 1.00871 0.95121 1.20221 0.82238 0.90557 0.75368 1.90701 1.60857 1.40434 1.49537 1.45766 1.06660 1.08736 1.74944 1.22876 0.90761 0.84926 1.01181 0.86997 1.21632 0.88586 0.97122 0.88359 1.44479 1.20176 1.65998 1.02247 1.18950 1.02822 1.30675 0.84937 0.89962 1.24839 0.96815 0.99993 0.97786 1.69927 1.16000 1.46160 1.23710 0.86179 0.78347 0.79055 0.82015 1.20900 1.21517 1.20992 1.21947 0.97637 0.92480 0.87919 1.23351 0.92819 0.81559 1.01340 0.86280 1.47271 1.35157 1.12951 1.11619 1.24238 0.98622 0.99751 0.93140 1.23549 1.07501 0.94732 0.97489 1.75014 1.11298 1.21768 1.06288 1.78233 1.19188 0.91598 1.19809 0.94037 0.89724 0.94162 0.92508 0.92255 0.92365 0.90575 0.91864 0.92316 0.90558 0.92001 0.76564 0.92320 0.92307 0.93251 0.92850 0.92266 0.77873 0.79883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.76 9.35 -35.23 -0.33 -5.09 16 3 C 0.09 1.17 4.09 37.16 0.15 1.32 16 4 C -0.08 -1.09 0.70 -155.66 -0.11 -1.20 16 5 C -0.14 -1.83 8.22 37.16 0.31 -1.52 16 6 C -0.14 -1.66 8.23 37.16 0.31 -1.36 16 7 C 0.53 8.95 6.48 -10.99 -0.07 8.88 16 8 O -0.54 -10.72 15.63 5.55 0.09 -10.63 16 9 N -0.71 -11.70 4.86 -52.03 -0.25 -11.95 16 10 C 0.11 1.90 3.18 -66.10 -0.21 1.69 16 11 H 0.11 1.96 7.55 -51.93 -0.39 1.57 16 12 C 0.17 3.65 4.66 -3.07 -0.01 3.64 16 13 N -0.60 -12.87 2.18 -170.04 -0.37 -13.24 16 14 C -0.25 -5.94 10.07 -15.06 -0.15 -6.09 16 15 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 16 C 0.00 0.10 5.49 -17.43 -0.10 0.00 16 17 N -0.91 -24.58 10.31 55.49 0.57 -24.01 16 18 Si 0.91 20.33 29.55 -169.99 -5.02 15.31 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.13 2.15 6.26 -2.50 -0.02 2.14 16 23 C 0.11 1.74 4.05 -65.78 -0.27 1.47 16 24 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 25 N -0.28 -4.47 2.33 -52.68 -0.12 -4.59 16 26 C -0.01 -0.10 10.01 -17.05 -0.17 -0.27 16 27 C -0.08 -1.18 12.05 -17.74 -0.21 -1.39 16 28 N -0.28 -4.72 12.41 30.23 0.38 -4.34 16 29 N -0.11 -1.84 12.48 60.35 0.75 -1.09 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.06 0.80 7.56 -51.93 -0.39 0.40 16 36 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 40 H 0.06 0.78 7.57 -51.93 -0.39 0.38 16 41 H 0.40 6.46 5.80 -40.82 -0.24 6.22 16 42 H 0.06 1.43 7.27 -51.93 -0.38 1.06 16 43 H 0.06 1.51 7.51 -51.93 -0.39 1.12 16 44 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 45 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 46 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 47 H 0.20 3.77 6.80 -52.48 -0.36 3.41 16 48 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -28.77 385.69 -5.46 -34.23 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -7.52 Total: 10.87 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 0.56 Total: 8.72 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.95 Total: -59.22 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.24 Total: -15.72 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.77 -5.46 -34.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129106098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.883 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds