Wall clock time and date at job start Tue Mar 31 2020 20:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00060 * 2 1 4 4 C 1.53000 * 109.47477 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46559 * 59.99705 * 4 3 2 6 6 C 1.52999 * 109.47173 * 300.00020 * 4 3 2 7 7 C 1.50692 * 109.47499 * 179.97438 * 4 3 2 8 8 O 1.21287 * 120.00060 * 0.02562 * 7 4 3 9 9 N 1.34781 * 120.00219 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00046 * 179.97438 * 9 7 4 11 11 H 1.09005 * 110.63876 * 31.85749 * 10 9 7 12 12 C 1.54315 * 110.87331 * 268.60801 * 10 9 7 13 13 N 1.47017 * 107.27451 * 219.37528 * 12 10 9 14 14 C 1.36937 * 125.65517 * 178.90292 * 13 12 10 15 15 H 1.07993 * 120.00534 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99590 * 0.02630 * 14 13 12 17 17 N 1.31617 * 120.00184 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99863 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47532 * 59.99646 * 18 16 14 20 20 H 1.48503 * 109.46814 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47111 * 299.98887 * 18 16 14 22 22 C 1.47471 * 108.71970 * 358.97486 * 13 12 10 23 23 C 1.54906 * 104.81210 * 24.07007 * 22 13 12 24 24 H 1.09002 * 111.00655 * 204.94912 * 23 22 13 25 25 N 1.46504 * 111.00267 * 81.13587 * 23 22 13 26 26 C 1.35315 * 125.86755 * 329.58450 * 25 23 22 27 27 C 1.35351 * 106.17354 * 180.02562 * 26 25 23 28 28 N 1.33771 * 106.49667 * 359.97438 * 27 26 25 29 29 N 1.28638 * 108.88709 * 359.74002 * 28 27 26 30 30 H 1.09003 * 109.46666 * 60.00937 * 1 2 3 31 31 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47512 * 300.00392 * 1 2 3 33 33 H 1.09004 * 109.47441 * 59.99719 * 3 2 1 34 34 H 1.09004 * 109.47338 * 299.99703 * 3 2 1 35 35 H 1.09002 * 109.46355 * 180.02562 * 5 4 3 36 36 H 1.08993 * 109.47206 * 299.99946 * 5 4 3 37 37 H 1.08997 * 109.47199 * 60.00586 * 5 4 3 38 38 H 1.08995 * 109.46937 * 299.99918 * 6 4 3 39 39 H 1.09002 * 109.46791 * 59.99611 * 6 4 3 40 40 H 1.08995 * 109.47242 * 179.97438 * 6 4 3 41 41 H 0.96999 * 119.99902 * 359.97438 * 9 7 4 42 42 H 1.08998 * 109.88341 * 338.79461 * 12 10 9 43 43 H 1.09007 * 109.88217 * 99.95701 * 12 10 9 44 44 H 0.96998 * 120.00767 * 180.02562 * 17 16 14 45 45 H 1.09008 * 110.34870 * 265.25136 * 22 13 12 46 46 H 1.09001 * 110.40581 * 142.92172 * 22 13 12 47 47 H 1.08004 * 126.91024 * 0.02562 * 26 25 23 48 48 H 1.07990 * 126.74995 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9865 0.4257 1.2502 7 6 4.1484 2.5613 0.0000 8 8 3.4355 3.5426 -0.0004 9 7 5.4888 2.7022 -0.0001 10 6 6.0847 4.0406 -0.0013 11 1 5.4494 4.7445 0.5365 12 6 6.3403 4.5274 -1.4432 13 7 7.6298 5.2334 -1.4434 14 6 8.2295 5.7999 -2.5364 15 1 9.1820 6.2981 -2.4322 16 6 7.6131 5.7335 -3.7784 17 7 6.4526 5.1258 -3.9056 18 14 8.4315 6.5055 -5.2696 19 1 9.7555 5.8708 -5.4919 20 1 7.5766 6.2982 -6.4661 21 1 8.6129 7.9609 -5.0367 22 6 8.1719 5.2295 -0.0719 23 6 7.5095 4.0076 0.6122 24 1 7.4723 4.1379 1.6937 25 7 8.2046 2.7673 0.2591 26 6 8.8509 2.5244 -0.9047 27 6 9.3428 1.2672 -0.8074 28 7 8.9787 0.8088 0.3954 29 7 8.3106 1.7236 1.0049 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 5.0740 0.3387 -1.2476 36 1 3.5441 -0.5706 -1.2483 37 1 3.6661 0.9658 -2.1385 38 1 3.6645 0.9667 2.1399 39 1 3.5431 -0.5701 1.2502 40 1 5.0730 0.3393 1.2504 41 1 6.0590 1.9175 0.0006 42 1 6.3848 3.6742 -2.1201 43 1 5.5456 5.2068 -1.7515 44 1 6.0220 5.0791 -4.7735 45 1 7.8987 6.1487 0.4463 46 1 9.2553 5.1120 -0.0918 47 1 8.9536 3.1981 -1.7425 48 1 9.9170 0.7385 -1.5537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129106098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:27 Heat of formation + Delta-G solvation = 34.095556 kcal Electronic energy + Delta-G solvation = -31479.616507 eV Core-core repulsion = 27379.622540 eV Total energy + Delta-G solvation = -4099.993967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.24885 -41.54264 -39.72308 -38.73442 -36.05963 -35.70689 -34.73497 -33.41216 -31.83296 -30.51537 -29.22458 -28.38521 -28.30832 -26.72981 -26.53231 -24.43467 -23.74066 -23.44981 -21.97795 -21.51513 -20.66233 -19.22649 -18.56252 -18.32166 -17.42705 -17.18025 -16.93652 -16.69352 -16.44936 -16.06560 -15.95149 -15.70946 -15.65850 -15.18650 -14.96937 -14.64109 -14.27837 -14.26219 -13.96588 -13.88094 -13.40670 -13.34247 -13.17703 -13.06558 -12.87425 -12.82937 -12.70313 -12.52955 -12.42491 -12.27185 -12.14190 -12.09501 -11.87390 -11.81783 -11.79862 -11.14058 -10.88801 -10.73488 -10.67577 -10.25074 -10.19798 -9.00224 -7.86557 -5.25526 0.66936 1.32765 1.45307 1.50306 1.51198 1.57319 1.66400 1.86153 2.47535 2.82719 3.17342 3.33378 3.37574 3.43164 3.56137 3.70148 3.76182 3.78209 3.92228 4.03937 4.21341 4.27347 4.39694 4.44711 4.44805 4.47314 4.57778 4.59437 4.62956 4.69138 4.73800 4.80737 4.81284 4.85222 4.85492 4.88386 5.07110 5.15591 5.21937 5.31514 5.42456 5.49252 5.68659 5.74205 6.09255 6.11402 6.28347 6.99099 7.04572 7.56220 7.69145 8.28652 9.21824 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.004219 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.809930 B = 6635.298894 C = 8027.031081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.093 3.907 4 C -0.075 4.075 5 C -0.130 4.130 6 C -0.127 4.127 7 C 0.526 3.474 8 O -0.573 6.573 9 N -0.703 5.703 10 C 0.119 3.881 11 H 0.115 0.885 12 C 0.190 3.810 13 N -0.614 5.614 14 C -0.239 4.239 15 H 0.094 0.906 16 C -0.053 4.053 17 N -0.946 5.946 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.304 1.304 21 H -0.280 1.280 22 C 0.127 3.873 23 C 0.127 3.873 24 H 0.157 0.843 25 N -0.274 5.274 26 C -0.019 4.019 27 C -0.064 4.064 28 N -0.290 5.290 29 N -0.109 5.109 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.402 0.598 42 H 0.024 0.976 43 H 0.007 0.993 44 H 0.245 0.755 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.186 0.814 48 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -9.057 9.681 13.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.016 3.984 4 C -0.078 4.078 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.314 3.686 8 O -0.452 6.452 9 N -0.354 5.354 10 C 0.011 3.989 11 H 0.132 0.868 12 C 0.063 3.937 13 N -0.341 5.341 14 C -0.367 4.367 15 H 0.112 0.888 16 C -0.247 4.247 17 N -0.594 5.594 18 Si 0.801 3.199 19 H -0.198 1.198 20 H -0.231 1.231 21 H -0.207 1.207 22 C 0.001 3.999 23 C 0.023 3.977 24 H 0.175 0.825 25 N -0.068 5.068 26 C -0.171 4.171 27 C -0.221 4.221 28 N -0.156 5.156 29 N -0.088 5.088 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.239 0.761 42 H 0.043 0.957 43 H 0.025 0.975 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.203 0.797 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.203 -9.124 10.847 14.784 hybrid contribution 0.346 1.303 -2.479 2.822 sum -3.857 -7.821 8.368 12.086 Atomic orbital electron populations 1.22949 0.79360 1.04124 1.00628 1.87769 1.21336 1.26802 1.95541 1.22044 0.90875 0.84649 1.00816 1.20687 0.95267 0.91563 1.00260 1.21740 1.01067 1.01363 0.94552 1.21743 1.01421 1.01205 0.94081 1.20830 0.82068 0.91483 0.74243 1.90683 1.61526 1.41894 1.51052 1.45714 1.06742 1.08432 1.74543 1.22595 0.92416 0.85457 0.98413 0.86764 1.21130 0.87400 0.94676 0.90458 1.44591 1.20151 1.65612 1.03783 1.19337 1.02759 1.28975 0.85614 0.88824 1.25529 0.97468 1.01334 1.00341 1.70156 1.17633 1.48443 1.23162 0.85261 0.77532 0.78361 0.78792 1.19776 1.23107 1.20657 1.22150 0.98219 0.93951 0.85587 1.23366 0.90602 0.80724 1.03001 0.82546 1.47307 1.34985 1.13064 1.11417 1.24067 0.99824 1.00182 0.93035 1.23981 1.06549 0.94147 0.97385 1.75024 1.11789 1.21959 1.06874 1.78213 1.19145 0.91613 1.19798 0.93920 0.87520 0.93264 0.92550 0.93912 0.92661 0.88876 0.93547 0.91840 0.89250 0.92135 0.76142 0.95738 0.97455 0.94591 0.90551 0.91123 0.79724 0.77137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -9.14 9.35 -148.98 -1.39 -10.53 16 3 C 0.09 2.49 4.09 71.98 0.29 2.78 16 4 C -0.07 -2.04 0.70 -52.93 -0.04 -2.08 16 5 C -0.13 -3.46 8.22 71.98 0.59 -2.87 16 6 C -0.13 -2.88 8.23 71.98 0.59 -2.29 16 7 C 0.53 17.93 6.48 87.65 0.57 18.50 16 8 O -0.57 -23.40 15.63 -3.05 -0.05 -23.44 16 9 N -0.70 -23.08 4.86 -436.92 -2.12 -25.21 16 10 C 0.12 4.10 3.18 46.18 0.15 4.24 16 11 H 0.11 3.96 7.55 -2.38 -0.02 3.95 16 12 C 0.19 8.52 4.66 86.73 0.40 8.93 16 13 N -0.61 -26.34 2.18 -691.89 -1.51 -27.85 16 14 C -0.24 -11.51 10.07 84.03 0.85 -10.66 16 15 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 16 C -0.05 -2.72 5.49 84.86 0.47 -2.26 16 17 N -0.95 -53.41 10.31 21.65 0.22 -53.19 16 18 Si 0.97 42.48 29.55 68.60 2.03 44.50 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.13 4.03 6.26 86.85 0.54 4.57 16 23 C 0.13 3.62 4.05 46.38 0.19 3.80 16 24 H 0.16 3.44 8.14 -2.39 -0.02 3.42 16 25 N -0.27 -8.34 2.33 -320.57 -0.75 -9.08 16 26 C -0.02 -0.63 10.01 83.49 0.84 0.21 16 27 C -0.06 -1.86 12.05 83.73 1.01 -0.85 16 28 N -0.29 -9.22 12.41 -58.26 -0.72 -9.94 16 29 N -0.11 -3.41 12.48 37.02 0.46 -2.94 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 34 H 0.04 1.26 8.10 -2.38 -0.02 1.24 16 35 H 0.05 1.49 7.56 -2.39 -0.02 1.47 16 36 H 0.09 2.16 7.68 -2.39 -0.02 2.14 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.82 7.68 -2.39 -0.02 1.80 16 40 H 0.06 1.39 7.57 -2.39 -0.02 1.37 16 41 H 0.40 12.72 5.80 -92.71 -0.54 12.18 16 42 H 0.02 1.26 7.27 -2.39 -0.02 1.24 16 43 H 0.01 0.40 7.51 -2.38 -0.02 0.38 16 44 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 45 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.07 2.13 7.95 -2.39 -0.02 2.11 16 47 H 0.19 6.82 6.80 -2.91 -0.02 6.80 16 48 H 0.21 4.72 8.06 -2.92 -0.02 4.69 16 Total: -1.00 -64.22 385.69 4.29 -59.93 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.43 Total: 34.07 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 7.70 Total: 23.69 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -4.42 Total: -128.22 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.44 Total: -33.98 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -64.22 4.29 -59.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129106098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.027 kcal (2) G-P(sol) polarization free energy of solvation -64.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds