Wall clock time and date at job start Tue Mar 31 2020 20:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99847 * 2 1 4 4 H 1.08996 * 109.47105 * 15.18708 * 3 2 1 5 5 C 1.50699 * 109.47037 * 135.18959 * 3 2 1 6 6 O 1.21279 * 119.99953 * 5.13683 * 5 3 2 7 7 N 1.34775 * 119.99968 * 185.14752 * 5 3 2 8 8 C 1.46497 * 120.00151 * 184.62979 * 7 5 3 9 9 H 1.08998 * 110.88840 * 34.29111 * 8 7 5 10 10 C 1.54913 * 111.00053 * 270.41073 * 8 7 5 11 11 N 1.47469 * 104.81034 * 204.94592 * 10 8 7 12 12 C 1.36935 * 125.63011 * 204.06778 * 11 10 8 13 13 H 1.07995 * 120.00159 * 180.02562 * 12 11 10 14 14 C 1.38813 * 119.99946 * 0.02562 * 12 11 10 15 15 N 1.31620 * 120.00004 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46776 * 60.00394 * 16 14 12 18 18 H 1.48499 * 109.46988 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47337 * 300.00266 * 16 14 12 20 20 C 1.47022 * 108.71915 * 24.07706 * 11 10 8 21 21 C 1.54315 * 107.27308 * 358.96692 * 20 11 10 22 22 H 1.08996 * 110.72281 * 219.44261 * 21 20 11 23 23 N 1.46502 * 110.86874 * 96.24651 * 21 20 11 24 24 C 1.35312 * 125.86776 * 331.10412 * 23 21 20 25 25 C 1.35356 * 106.17319 * 179.90837 * 24 23 21 26 26 N 1.33762 * 106.50005 * 0.35021 * 25 24 23 27 27 N 1.28640 * 108.88333 * 359.77463 * 26 25 24 28 28 C 1.53001 * 109.46843 * 255.18660 * 3 2 1 29 29 C 1.53003 * 109.47066 * 65.32607 * 28 3 2 30 30 C 1.52999 * 109.47096 * 305.32560 * 28 3 2 31 31 H 1.08994 * 109.47247 * 65.07680 * 1 2 3 32 32 H 1.09005 * 109.46776 * 185.07214 * 1 2 3 33 33 H 1.09000 * 109.46794 * 305.06726 * 1 2 3 34 34 H 0.97000 * 119.99981 * 4.61960 * 7 5 3 35 35 H 1.08992 * 110.36953 * 323.76018 * 10 8 7 36 36 H 1.09005 * 110.36356 * 86.08050 * 10 8 7 37 37 H 0.97000 * 120.00039 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.87890 * 239.55094 * 20 11 10 39 39 H 1.09003 * 109.88458 * 118.39418 * 20 11 10 40 40 H 1.08004 * 126.91489 * 0.02562 * 24 23 21 41 41 H 1.08007 * 126.74647 * 180.12565 * 25 24 23 42 42 H 1.08996 * 109.46894 * 185.32556 * 28 3 2 43 43 H 1.09003 * 109.47143 * 296.62129 * 29 28 3 44 44 H 1.08996 * 109.47275 * 176.61958 * 29 28 3 45 45 H 1.08999 * 109.47108 * 56.62215 * 29 28 3 46 46 H 1.08996 * 109.46889 * 184.44496 * 30 28 3 47 47 H 1.08999 * 109.46992 * 304.44505 * 30 28 3 48 48 H 1.09002 * 109.46872 * 64.44952 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2520 2.0408 0.2692 5 6 3.1354 1.3545 1.0013 6 8 3.4735 0.3456 1.5833 7 7 3.7657 2.5194 1.2503 8 6 4.9242 2.5485 2.1465 9 1 5.5093 1.6334 2.0552 10 6 4.4855 2.7831 3.6135 11 7 5.6619 3.3865 4.2669 12 6 5.9366 3.3485 5.6078 13 1 6.8282 3.8233 5.9900 14 6 5.0692 2.6998 6.4759 15 7 3.9824 2.1216 6.0102 16 14 5.4443 2.6474 8.3052 17 1 5.5138 4.0326 8.8360 18 1 4.3709 1.9012 9.0094 19 1 6.7462 1.9675 8.5242 20 6 6.4905 4.0355 3.2404 21 6 5.8028 3.7991 1.8794 22 1 6.5413 3.5933 1.1046 23 7 4.9714 4.9469 1.5084 24 6 4.3579 5.7924 2.3684 25 6 3.7045 6.6988 1.6044 26 7 3.9407 6.3632 0.3312 27 7 4.6945 5.3211 0.3083 28 6 2.5546 1.6214 -1.3946 29 6 1.3943 1.7025 -2.3886 30 6 3.5205 0.5166 -1.8273 31 1 -0.3633 0.4330 -0.9319 32 1 -0.3633 -1.0237 0.0909 33 1 -0.3633 0.5904 0.8411 34 1 3.4524 3.3386 0.8360 35 1 3.6382 3.4676 3.6513 36 1 4.2307 1.8360 4.0893 37 1 3.3764 1.6679 6.6168 38 1 7.4868 3.5933 3.2341 39 1 6.5588 5.1049 3.4406 40 1 4.3857 5.7533 3.4473 41 1 3.1067 7.5276 1.9540 42 1 3.0808 2.5756 -1.3716 43 1 0.9051 0.7308 -2.4562 44 1 1.7753 1.9865 -3.3695 45 1 0.6757 2.4481 -2.0483 46 1 3.9683 0.7803 -2.7854 47 1 4.3044 0.4054 -1.0781 48 1 2.9769 -0.4229 -1.9266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129228610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:44 Heat of formation + Delta-G solvation = 57.583946 kcal Electronic energy + Delta-G solvation = -31486.903212 eV Core-core repulsion = 27387.927778 eV Total energy + Delta-G solvation = -4098.975434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.10464 -40.10277 -38.45490 -37.22771 -34.78397 -34.14414 -33.41516 -31.78409 -30.71956 -29.29980 -28.33549 -27.51451 -27.07981 -25.75154 -24.81140 -22.70304 -22.40128 -21.39212 -20.43238 -20.21142 -19.83574 -17.96204 -17.32155 -17.00750 -16.72059 -15.98860 -15.76799 -15.19370 -15.08839 -14.68933 -14.44570 -14.29752 -14.05414 -13.92655 -13.67901 -13.40983 -13.10509 -12.95356 -12.72590 -12.46145 -12.38406 -12.20222 -11.90433 -11.65742 -11.51314 -11.40343 -11.33151 -11.11597 -11.03050 -10.82397 -10.80190 -10.73562 -10.52827 -10.23083 -10.03463 -9.96147 -9.86885 -9.18063 -9.12425 -8.85039 -8.68539 -7.14161 -5.83901 -3.31169 1.84077 2.50492 2.77891 2.85198 3.05093 3.30990 3.35700 3.37927 3.94628 4.29474 4.51089 4.60569 4.64602 4.70787 4.83600 4.87328 5.03732 5.06617 5.15065 5.28247 5.31149 5.33015 5.38021 5.46988 5.51437 5.52450 5.59176 5.61371 5.73593 5.75280 5.81023 5.84860 5.96695 6.04415 6.10020 6.14807 6.16626 6.32903 6.37418 6.57701 6.88327 6.97288 7.15896 7.38540 7.62940 7.71805 8.11755 8.48234 8.71756 8.97132 9.58058 10.15388 11.18818 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.004401 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.528225 B = 6359.961414 C = 8039.230457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.078 3.922 4 H 0.083 0.917 5 C 0.512 3.488 6 O -0.508 6.508 7 N -0.717 5.717 8 C 0.114 3.886 9 H 0.114 0.886 10 C 0.145 3.855 11 N -0.598 5.598 12 C -0.239 4.239 13 H 0.082 0.918 14 C 0.000 4.000 15 N -0.914 5.914 16 Si 0.919 3.081 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.130 3.870 21 C 0.117 3.883 22 H 0.120 0.880 23 N -0.276 5.276 24 C -0.017 4.017 25 C -0.068 4.068 26 N -0.277 5.277 27 N -0.103 5.103 28 C -0.106 4.106 29 C -0.147 4.147 30 C -0.140 4.140 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.394 0.606 35 H 0.020 0.980 36 H 0.123 0.877 37 H 0.257 0.743 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.194 0.806 41 H 0.186 0.814 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 2.580 -13.388 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.268 6.268 3 C 0.016 3.984 4 H 0.101 0.899 5 C 0.296 3.704 6 O -0.381 6.381 7 N -0.371 5.371 8 C 0.006 3.994 9 H 0.132 0.868 10 C 0.019 3.981 11 N -0.326 5.326 12 C -0.366 4.366 13 H 0.100 0.900 14 C -0.197 4.197 15 N -0.560 5.560 16 Si 0.748 3.252 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.209 1.209 20 C 0.002 3.998 21 C 0.014 3.986 22 H 0.138 0.862 23 N -0.069 5.069 24 C -0.168 4.168 25 C -0.225 4.225 26 N -0.143 5.143 27 N -0.082 5.082 28 C -0.125 4.125 29 C -0.204 4.204 30 C -0.197 4.197 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.229 0.771 35 H 0.038 0.962 36 H 0.140 0.860 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.211 0.789 41 H 0.203 0.797 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.697 1.241 -14.278 14.801 hybrid contribution -0.326 0.923 2.055 2.276 sum -4.023 2.163 -12.223 13.049 Atomic orbital electron populations 1.22983 0.81042 1.03109 1.00028 1.88020 1.19306 1.24853 1.94627 1.22046 0.94912 0.87069 0.94356 0.89906 1.20449 0.83691 0.83497 0.82752 1.90752 1.64327 1.33885 1.49154 1.45757 1.32353 1.10080 1.48936 1.23026 0.86582 0.96183 0.93569 0.86831 1.22418 0.88376 1.01966 0.85325 1.44402 1.22888 1.62720 1.02542 1.18959 1.06447 1.31090 0.80131 0.90013 1.24839 0.96640 0.99664 0.98604 1.69747 1.13139 1.39617 1.33474 0.86110 0.77402 0.77629 0.84041 1.21036 1.21460 1.20910 1.21652 0.95048 0.98008 0.85056 1.23224 0.92590 0.82642 1.00180 0.86190 1.47455 1.33347 1.21183 1.04935 1.23901 0.99507 0.93208 1.00211 1.23540 1.06180 1.03334 0.89495 1.75038 1.11842 1.06970 1.20460 1.78240 1.15613 1.10859 1.03528 1.21513 0.97583 1.00338 0.93077 1.21878 0.97635 1.01936 0.98946 1.21698 0.98735 0.98471 1.00815 0.93771 0.89344 0.93814 0.77064 0.96174 0.85973 0.93207 0.92679 0.94081 0.78916 0.79702 0.89769 0.92023 0.92028 0.92748 0.92716 0.92577 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.47 101.05 1.06 1.32 16 2 O -0.35 -5.15 8.79 -55.09 -0.48 -5.63 16 3 C 0.08 1.09 2.35 -27.88 -0.07 1.02 16 4 H 0.08 1.03 7.59 -51.93 -0.39 0.63 16 5 C 0.51 9.00 6.10 -10.99 -0.07 8.94 16 6 O -0.51 -11.14 16.25 -14.30 -0.23 -11.38 16 7 N -0.72 -11.84 5.05 -51.73 -0.26 -12.10 16 8 C 0.11 2.04 3.20 -65.78 -0.21 1.83 16 9 H 0.11 2.16 7.70 -51.93 -0.40 1.76 16 10 C 0.14 3.22 5.17 -2.50 -0.01 3.21 16 11 N -0.60 -13.31 3.40 -170.04 -0.58 -13.89 16 12 C -0.24 -5.99 10.27 -15.06 -0.15 -6.14 16 13 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 14 C 0.00 -0.01 5.49 -17.43 -0.10 -0.10 16 15 N -0.91 -25.33 10.09 55.49 0.56 -24.77 16 16 Si 0.92 20.85 29.55 -169.99 -5.02 15.82 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.13 2.25 6.29 -3.07 -0.02 2.23 16 21 C 0.12 1.80 3.96 -66.10 -0.26 1.54 16 22 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 23 N -0.28 -4.23 2.40 -52.99 -0.13 -4.36 16 24 C -0.02 -0.25 9.36 -17.05 -0.16 -0.41 16 25 C -0.07 -0.96 12.05 -17.74 -0.21 -1.17 16 26 N -0.28 -4.38 12.41 30.24 0.38 -4.01 16 27 N -0.10 -1.64 12.22 60.35 0.74 -0.90 16 28 C -0.11 -1.24 2.73 -90.62 -0.25 -1.49 16 29 C -0.15 -1.37 8.35 37.16 0.31 -1.06 16 30 C -0.14 -1.71 8.80 37.16 0.33 -1.38 16 31 H 0.04 0.38 6.39 -51.93 -0.33 0.05 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.46 8.03 -51.93 -0.42 0.04 16 34 H 0.39 6.13 6.61 -40.82 -0.27 5.86 16 35 H 0.02 0.48 7.59 -51.93 -0.39 0.09 16 36 H 0.12 3.31 5.88 -51.93 -0.31 3.00 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.70 7.19 -51.93 -0.37 0.33 16 40 H 0.19 3.08 7.72 -52.48 -0.41 2.68 16 41 H 0.19 1.97 8.06 -52.48 -0.42 1.55 16 42 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 43 H 0.06 0.57 6.69 -51.93 -0.35 0.22 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.80 7.26 -51.93 -0.38 0.42 16 48 H 0.06 0.81 7.70 -51.93 -0.40 0.41 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -30.69 383.39 -6.40 -37.09 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.33 Total: 10.01 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 0.19 Total: 8.32 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.71 Total: -60.02 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.72 Total: -17.01 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.69 -6.40 -37.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129228610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.675 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds