Wall clock time and date at job start Tue Mar 31 2020 20:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99847 * 2 1 4 4 H 1.08996 * 109.47105 * 15.18708 * 3 2 1 5 5 C 1.50699 * 109.47037 * 135.18959 * 3 2 1 6 6 O 1.21279 * 119.99953 * 5.13683 * 5 3 2 7 7 N 1.34775 * 119.99968 * 185.14752 * 5 3 2 8 8 C 1.46497 * 120.00151 * 184.62979 * 7 5 3 9 9 H 1.08998 * 110.88840 * 34.29111 * 8 7 5 10 10 C 1.54913 * 111.00053 * 270.41073 * 8 7 5 11 11 N 1.47469 * 104.81034 * 204.94592 * 10 8 7 12 12 C 1.36935 * 125.63011 * 204.06778 * 11 10 8 13 13 H 1.07995 * 120.00159 * 180.02562 * 12 11 10 14 14 C 1.38813 * 119.99946 * 0.02562 * 12 11 10 15 15 N 1.31620 * 120.00004 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46776 * 60.00394 * 16 14 12 18 18 H 1.48499 * 109.46988 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47337 * 300.00266 * 16 14 12 20 20 C 1.47022 * 108.71915 * 24.07706 * 11 10 8 21 21 C 1.54315 * 107.27308 * 358.96692 * 20 11 10 22 22 H 1.08996 * 110.72281 * 219.44261 * 21 20 11 23 23 N 1.46502 * 110.86874 * 96.24651 * 21 20 11 24 24 C 1.35312 * 125.86776 * 331.10412 * 23 21 20 25 25 C 1.35356 * 106.17319 * 179.90837 * 24 23 21 26 26 N 1.33762 * 106.50005 * 0.35021 * 25 24 23 27 27 N 1.28640 * 108.88333 * 359.77463 * 26 25 24 28 28 C 1.53001 * 109.46843 * 255.18660 * 3 2 1 29 29 C 1.53003 * 109.47066 * 65.32607 * 28 3 2 30 30 C 1.52999 * 109.47096 * 305.32560 * 28 3 2 31 31 H 1.08994 * 109.47247 * 65.07680 * 1 2 3 32 32 H 1.09005 * 109.46776 * 185.07214 * 1 2 3 33 33 H 1.09000 * 109.46794 * 305.06726 * 1 2 3 34 34 H 0.97000 * 119.99981 * 4.61960 * 7 5 3 35 35 H 1.08992 * 110.36953 * 323.76018 * 10 8 7 36 36 H 1.09005 * 110.36356 * 86.08050 * 10 8 7 37 37 H 0.97000 * 120.00039 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.87890 * 239.55094 * 20 11 10 39 39 H 1.09003 * 109.88458 * 118.39418 * 20 11 10 40 40 H 1.08004 * 126.91489 * 0.02562 * 24 23 21 41 41 H 1.08007 * 126.74647 * 180.12565 * 25 24 23 42 42 H 1.08996 * 109.46894 * 185.32556 * 28 3 2 43 43 H 1.09003 * 109.47143 * 296.62129 * 29 28 3 44 44 H 1.08996 * 109.47275 * 176.61958 * 29 28 3 45 45 H 1.08999 * 109.47108 * 56.62215 * 29 28 3 46 46 H 1.08996 * 109.46889 * 184.44496 * 30 28 3 47 47 H 1.08999 * 109.46992 * 304.44505 * 30 28 3 48 48 H 1.09002 * 109.46872 * 64.44952 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2520 2.0408 0.2692 5 6 3.1354 1.3545 1.0013 6 8 3.4735 0.3456 1.5833 7 7 3.7657 2.5194 1.2503 8 6 4.9242 2.5485 2.1465 9 1 5.5093 1.6334 2.0552 10 6 4.4855 2.7831 3.6135 11 7 5.6619 3.3865 4.2669 12 6 5.9366 3.3485 5.6078 13 1 6.8282 3.8233 5.9900 14 6 5.0692 2.6998 6.4759 15 7 3.9824 2.1216 6.0102 16 14 5.4443 2.6474 8.3052 17 1 5.5138 4.0326 8.8360 18 1 4.3709 1.9012 9.0094 19 1 6.7462 1.9675 8.5242 20 6 6.4905 4.0355 3.2404 21 6 5.8028 3.7991 1.8794 22 1 6.5413 3.5933 1.1046 23 7 4.9714 4.9469 1.5084 24 6 4.3579 5.7924 2.3684 25 6 3.7045 6.6988 1.6044 26 7 3.9407 6.3632 0.3312 27 7 4.6945 5.3211 0.3083 28 6 2.5546 1.6214 -1.3946 29 6 1.3943 1.7025 -2.3886 30 6 3.5205 0.5166 -1.8273 31 1 -0.3633 0.4330 -0.9319 32 1 -0.3633 -1.0237 0.0909 33 1 -0.3633 0.5904 0.8411 34 1 3.4524 3.3386 0.8360 35 1 3.6382 3.4676 3.6513 36 1 4.2307 1.8360 4.0893 37 1 3.3764 1.6679 6.6168 38 1 7.4868 3.5933 3.2341 39 1 6.5588 5.1049 3.4406 40 1 4.3857 5.7533 3.4473 41 1 3.1067 7.5276 1.9540 42 1 3.0808 2.5756 -1.3716 43 1 0.9051 0.7308 -2.4562 44 1 1.7753 1.9865 -3.3695 45 1 0.6757 2.4481 -2.0483 46 1 3.9683 0.7803 -2.7854 47 1 4.3044 0.4054 -1.0781 48 1 2.9769 -0.4229 -1.9266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129228610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:43 Heat of formation + Delta-G solvation = 37.035716 kcal Electronic energy + Delta-G solvation = -31487.794250 eV Core-core repulsion = 27387.927778 eV Total energy + Delta-G solvation = -4099.866472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -44.32266 -41.42513 -39.80751 -38.57461 -35.99209 -35.59163 -34.76911 -33.46874 -31.92420 -30.80041 -29.64395 -28.77738 -28.07521 -26.97993 -26.31663 -24.06857 -23.63832 -22.74685 -21.85007 -21.53898 -21.09507 -19.40507 -18.65677 -18.63014 -17.83354 -17.21982 -16.97515 -16.77736 -16.39443 -16.04373 -15.74428 -15.62537 -15.56218 -14.93843 -14.81182 -14.72626 -14.43206 -14.36616 -14.09212 -13.89958 -13.40304 -13.38784 -13.19055 -12.99922 -12.78043 -12.75137 -12.56226 -12.39619 -12.33023 -12.27900 -12.12929 -12.05732 -11.91869 -11.81765 -11.72566 -11.19523 -11.16359 -10.77591 -10.40257 -10.30618 -10.20146 -9.00925 -7.80934 -5.28606 0.60426 1.24716 1.46815 1.48937 1.50786 1.57137 1.62001 1.77362 2.46375 2.87089 3.15997 3.31612 3.34999 3.47371 3.58859 3.63280 3.70593 3.81305 3.90162 4.11646 4.16545 4.24058 4.28421 4.31780 4.38332 4.44670 4.50847 4.63403 4.69075 4.77495 4.78371 4.79687 4.80617 4.90365 4.97439 5.09036 5.12186 5.27532 5.34355 5.37708 5.38818 5.47373 5.63329 5.71242 5.98136 6.19926 6.35904 6.99948 7.10241 7.51119 7.68367 8.26653 9.19573 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.004401 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.528225 B = 6359.961414 C = 8039.230457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.378 6.378 3 C 0.082 3.918 4 H 0.100 0.900 5 C 0.506 3.494 6 O -0.560 6.560 7 N -0.706 5.706 8 C 0.123 3.877 9 H 0.102 0.898 10 C 0.161 3.839 11 N -0.614 5.614 12 C -0.237 4.237 13 H 0.094 0.906 14 C -0.059 4.059 15 N -0.946 5.946 16 Si 0.978 3.022 17 H -0.273 1.273 18 H -0.302 1.302 19 H -0.277 1.277 20 C 0.129 3.871 21 C 0.134 3.866 22 H 0.154 0.846 23 N -0.277 5.277 24 C -0.029 4.029 25 C -0.054 4.054 26 N -0.289 5.289 27 N -0.106 5.106 28 C -0.100 4.100 29 C -0.142 4.142 30 C -0.137 4.137 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.402 0.598 35 H -0.001 1.001 36 H 0.071 0.929 37 H 0.245 0.755 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.183 0.817 41 H 0.218 0.782 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.028 0.972 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 4.475 -15.287 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.296 6.296 3 C 0.021 3.979 4 H 0.118 0.882 5 C 0.293 3.707 6 O -0.437 6.437 7 N -0.359 5.359 8 C 0.015 3.985 9 H 0.120 0.880 10 C 0.034 3.966 11 N -0.341 5.341 12 C -0.365 4.365 13 H 0.112 0.888 14 C -0.252 4.252 15 N -0.595 5.595 16 Si 0.806 3.194 17 H -0.199 1.199 18 H -0.229 1.229 19 H -0.203 1.203 20 C 0.003 3.997 21 C 0.031 3.969 22 H 0.171 0.829 23 N -0.070 5.070 24 C -0.181 4.181 25 C -0.211 4.211 26 N -0.155 5.155 27 N -0.085 5.085 28 C -0.119 4.119 29 C -0.199 4.199 30 C -0.194 4.194 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.239 0.761 35 H 0.017 0.983 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.201 0.799 41 H 0.235 0.765 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.047 0.953 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.485 3.193 -16.218 16.893 hybrid contribution -0.389 0.369 2.626 2.680 sum -3.874 3.562 -13.592 14.575 Atomic orbital electron populations 1.23213 0.79077 1.04163 1.01356 1.87990 1.21534 1.25320 1.94746 1.22117 0.93861 0.87490 0.94443 0.88197 1.21314 0.84055 0.82746 0.82591 1.90724 1.66079 1.35626 1.51262 1.45663 1.31826 1.10323 1.48132 1.22628 0.87263 0.97198 0.91392 0.88021 1.21921 0.88226 0.98772 0.87687 1.44530 1.23511 1.63295 1.02794 1.19377 1.06114 1.29458 0.81559 0.88841 1.25603 0.96929 1.00370 1.02341 1.70050 1.14280 1.41217 1.33947 0.85164 0.76701 0.77740 0.79768 1.19909 1.22878 1.20343 1.21816 0.95128 0.98225 0.84538 1.23080 0.92208 0.81334 1.00289 0.82885 1.47420 1.33504 1.21091 1.05030 1.23912 1.00326 0.93902 0.99939 1.24033 1.05152 1.03369 0.88533 1.75049 1.12118 1.07104 1.21223 1.78239 1.15830 1.11082 1.03362 1.21513 0.98411 0.99890 0.92119 1.21854 0.96768 1.02539 0.98740 1.21671 0.98126 0.98633 1.00976 0.91133 0.88329 0.93955 0.76133 0.98266 0.91104 0.94551 0.90747 0.92818 0.79944 0.76548 0.89629 0.91804 0.90600 0.91575 0.90628 0.95317 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.47 113.37 1.19 1.54 16 2 O -0.38 -11.01 8.79 -129.99 -1.14 -12.15 16 3 C 0.08 2.25 2.35 29.85 0.07 2.32 16 4 H 0.10 2.34 7.59 -2.39 -0.02 2.32 16 5 C 0.51 18.27 6.10 87.66 0.53 18.80 16 6 O -0.56 -25.90 16.25 15.96 0.26 -25.64 16 7 N -0.71 -23.44 5.05 -435.98 -2.20 -25.64 16 8 C 0.12 4.48 3.20 46.38 0.15 4.63 16 9 H 0.10 3.99 7.70 -2.39 -0.02 3.98 16 10 C 0.16 7.42 5.17 86.85 0.45 7.87 16 11 N -0.61 -27.55 3.40 -691.89 -2.35 -29.90 16 12 C -0.24 -11.92 10.27 84.03 0.86 -11.06 16 13 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 14 C -0.06 -3.17 5.49 84.86 0.47 -2.70 16 15 N -0.95 -55.07 10.09 21.65 0.22 -54.85 16 16 Si 0.98 43.64 29.55 68.60 2.03 45.66 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.13 4.28 6.29 86.73 0.55 4.82 16 21 C 0.13 3.91 3.96 46.17 0.18 4.10 16 22 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 23 N -0.28 -7.97 2.40 -321.56 -0.77 -8.74 16 24 C -0.03 -0.84 9.36 83.49 0.78 -0.06 16 25 C -0.05 -1.37 12.05 83.73 1.01 -0.36 16 26 N -0.29 -8.37 12.41 -58.25 -0.72 -9.09 16 27 N -0.11 -3.11 12.22 37.02 0.45 -2.66 16 28 C -0.10 -2.17 2.73 -10.79 -0.03 -2.20 16 29 C -0.14 -2.22 8.35 71.98 0.60 -1.62 16 30 C -0.14 -3.22 8.80 71.98 0.63 -2.59 16 31 H 0.07 1.03 6.39 -2.39 -0.02 1.02 16 32 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.04 0.85 8.03 -2.39 -0.02 0.83 16 34 H 0.40 12.15 6.61 -92.71 -0.61 11.54 16 35 H 0.00 -0.03 7.59 -2.39 -0.02 -0.05 16 36 H 0.07 4.09 5.88 -2.38 -0.01 4.07 16 37 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.71 7.19 -2.39 -0.02 1.69 16 40 H 0.18 5.72 7.72 -2.91 -0.02 5.69 16 41 H 0.22 3.89 8.06 -2.91 -0.02 3.86 16 42 H 0.09 1.84 7.91 -2.39 -0.02 1.82 16 43 H 0.06 0.99 6.69 -2.39 -0.02 0.97 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.03 0.81 7.26 -2.39 -0.02 0.80 16 48 H 0.06 1.45 7.70 -2.39 -0.02 1.43 16 Total: -1.00 -70.00 383.39 3.57 -66.43 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.36 Total: 33.11 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 7.44 Total: 23.47 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -5.37 Total: -130.88 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.88 Total: -37.80 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.00 3.57 -66.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129228610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.461 kcal (2) G-P(sol) polarization free energy of solvation -69.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds