Wall clock time and date at job start Tue Mar 31 2020 20:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46810 * 2 1 4 4 C 1.42897 * 113.99753 * 175.05544 * 3 2 1 5 5 H 1.09000 * 109.47624 * 334.32224 * 4 3 2 6 6 C 1.53004 * 109.47273 * 94.32140 * 4 3 2 7 7 C 1.53010 * 109.46969 * 62.23227 * 6 4 3 8 8 C 1.50697 * 109.47292 * 214.31891 * 4 3 2 9 9 O 1.21282 * 119.99955 * 348.18464 * 8 4 3 10 10 N 1.34780 * 120.00529 * 168.18328 * 8 4 3 11 11 C 1.47027 * 125.64151 * 4.94252 * 10 8 4 12 12 C 1.54323 * 107.26737 * 181.02392 * 11 10 8 13 13 H 1.09008 * 110.71831 * 140.73239 * 12 11 10 14 14 N 1.46499 * 110.71941 * 263.82739 * 12 11 10 15 15 C 1.36934 * 120.00049 * 273.54424 * 14 12 11 16 16 H 1.07998 * 120.00256 * 0.02562 * 15 14 12 17 17 C 1.38810 * 119.99925 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00240 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00068 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46837 * 89.99894 * 19 17 15 21 21 H 1.48498 * 109.46905 * 209.99725 * 19 17 15 22 22 H 1.48500 * 109.47072 * 329.99959 * 19 17 15 23 23 C 1.55154 * 102.94427 * 22.19477 * 12 11 10 24 24 H 1.08998 * 111.01072 * 82.60689 * 23 12 11 25 25 N 1.46497 * 111.00527 * 206.42570 * 23 12 11 26 26 C 1.35316 * 125.86910 * 84.71266 * 25 23 12 27 27 C 1.35355 * 106.17589 * 179.90617 * 26 25 23 28 28 N 1.33776 * 106.49419 * 0.35307 * 27 26 25 29 29 N 1.28637 * 108.88557 * 359.77125 * 28 27 26 30 30 C 1.47418 * 125.65191 * 184.63878 * 10 8 4 31 31 H 1.09009 * 109.46666 * 60.00038 * 1 2 3 32 32 H 1.08994 * 109.46757 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47566 * 300.00529 * 1 2 3 34 34 H 1.08997 * 109.47287 * 239.99937 * 2 1 3 35 35 H 1.08999 * 109.47039 * 119.99579 * 2 1 3 36 36 H 1.08993 * 109.47436 * 182.23214 * 6 4 3 37 37 H 1.09004 * 109.46822 * 302.23629 * 6 4 3 38 38 H 1.09003 * 109.46517 * 185.17202 * 7 6 4 39 39 H 1.09001 * 109.46916 * 305.16914 * 7 6 4 40 40 H 1.08997 * 109.46855 * 65.17038 * 7 6 4 41 41 H 1.08999 * 109.88050 * 300.43966 * 11 10 8 42 42 H 1.08998 * 109.88273 * 61.45500 * 11 10 8 43 43 H 0.97003 * 119.99425 * 93.54967 * 14 12 11 44 44 H 0.97002 * 120.00284 * 180.02562 * 18 17 15 45 45 H 1.07999 * 126.91158 * 0.02562 * 26 25 23 46 46 H 1.07998 * 126.75597 * 180.12464 * 27 26 25 47 47 H 1.09003 * 110.36304 * 274.74503 * 30 10 8 48 48 H 1.08998 * 110.36808 * 37.06326 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4263 1.4618 0.1125 5 1 3.8230 0.5809 0.6172 6 6 4.0415 1.5696 -1.2842 7 6 3.5273 2.8362 -1.9716 8 6 3.7694 2.6942 0.9090 9 8 2.9117 3.5158 1.1545 10 7 5.0293 2.8836 1.3485 11 6 6.1828 2.0262 1.0385 12 6 7.4030 2.6151 1.7772 13 1 8.0282 1.8202 2.1840 14 7 8.1811 3.4791 0.8859 15 6 9.1485 2.9388 0.0814 16 1 9.3377 1.8758 0.1036 17 6 9.8861 3.7575 -0.7628 18 7 10.8156 3.2382 -1.5365 19 14 9.5594 5.5964 -0.8007 20 1 10.4213 6.2730 0.2017 21 1 9.8651 6.1256 -2.1541 22 1 8.1323 5.8523 -0.4797 23 6 6.7529 3.4445 2.9160 24 1 6.4954 2.8097 3.7638 25 7 7.6293 4.5420 3.3325 26 6 7.7068 5.7601 2.7483 27 6 8.6328 6.4560 3.4487 28 7 9.0762 5.6376 4.4095 29 7 8.4619 4.5115 4.3135 30 6 5.4804 3.9880 2.2145 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3632 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 5.1272 1.6171 -1.2003 37 1 3.7603 0.6968 -1.8734 38 1 3.8923 2.8660 -2.9983 39 1 2.4373 2.8316 -1.9734 40 1 3.8861 3.7132 -1.4328 41 1 5.9937 1.0105 1.3861 42 1 6.3636 2.0224 -0.0364 43 1 8.0109 4.4339 0.8658 44 1 11.3313 3.8104 -2.1261 45 1 7.1420 6.1079 1.8960 46 1 8.9534 7.4708 3.2654 47 1 5.7205 4.8662 1.6151 48 1 4.7147 4.2288 2.9520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129656846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:10 Heat of formation + Delta-G solvation = 51.629810 kcal Electronic energy + Delta-G solvation = -31118.101623 eV Core-core repulsion = 27018.867998 eV Total energy + Delta-G solvation = -4099.233625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.05657 -40.50110 -38.69527 -37.40179 -34.51146 -34.05047 -33.57340 -31.56019 -31.08486 -30.87887 -29.73213 -28.37293 -27.01405 -24.46831 -23.83240 -23.30920 -22.45361 -22.14576 -21.28563 -20.37441 -19.58098 -18.15919 -17.60891 -17.15367 -16.95059 -16.19522 -15.89103 -15.56137 -15.29980 -15.22012 -14.77910 -14.38778 -14.35834 -14.11485 -13.78518 -13.59147 -13.35513 -13.09040 -12.83418 -12.64076 -12.58407 -12.38424 -12.27990 -12.08776 -11.85056 -11.60521 -11.43027 -11.40594 -11.24256 -11.21762 -11.10398 -10.81922 -10.70583 -10.41928 -10.11823 -9.91915 -9.71877 -9.54608 -9.26673 -9.10342 -8.73082 -7.65807 -6.02628 -3.43842 1.82646 2.18209 2.52979 2.79586 2.84989 3.14005 3.22897 3.29565 3.63410 3.97589 4.34371 4.36115 4.51699 4.56481 4.62767 4.68009 4.72059 4.84283 4.86588 4.98472 5.08143 5.09464 5.18794 5.23872 5.32036 5.34617 5.37937 5.41519 5.44491 5.54326 5.61392 5.62020 5.69473 5.84666 5.87189 5.88574 5.98025 6.01553 6.07633 6.22861 6.33944 6.37438 6.77763 6.88521 7.37061 7.64210 8.07762 8.13189 8.75296 8.86278 9.59640 9.72689 11.14002 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.004068 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.488942 B = 6881.059375 C = 8217.544179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.356 6.356 4 C 0.081 3.919 5 H 0.085 0.915 6 C -0.144 4.144 7 C -0.147 4.147 8 C 0.536 3.464 9 O -0.523 6.523 10 N -0.610 5.610 11 C 0.065 3.935 12 C 0.170 3.830 13 H 0.096 0.904 14 N -0.733 5.733 15 C -0.262 4.262 16 H 0.096 0.904 17 C 0.021 3.979 18 N -0.920 5.920 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.279 1.279 23 C 0.113 3.887 24 H 0.134 0.866 25 N -0.264 5.264 26 C -0.050 4.050 27 C -0.050 4.050 28 N -0.273 5.273 29 N -0.077 5.077 30 C 0.110 3.890 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.363 0.637 44 H 0.264 0.736 45 H 0.183 0.817 46 H 0.186 0.814 47 H 0.078 0.922 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 -4.651 3.718 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.020 3.980 5 H 0.103 0.897 6 C -0.182 4.182 7 C -0.205 4.205 8 C 0.324 3.676 9 O -0.398 6.398 10 N -0.346 5.346 11 C -0.061 4.061 12 C 0.057 3.943 13 H 0.114 0.886 14 N -0.376 5.376 15 C -0.391 4.391 16 H 0.114 0.886 17 C -0.177 4.177 18 N -0.565 5.565 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.206 1.206 23 C 0.008 3.992 24 H 0.151 0.849 25 N -0.057 5.057 26 C -0.200 4.200 27 C -0.207 4.207 28 N -0.139 5.139 29 N -0.057 5.057 30 C -0.015 4.015 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.198 0.802 44 H 0.074 0.926 45 H 0.200 0.800 46 H 0.203 0.797 47 H 0.096 0.904 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.206 -5.069 4.803 17.646 hybrid contribution -0.331 1.671 -1.291 2.137 sum -16.537 -3.398 3.512 17.244 Atomic orbital electron populations 1.21726 0.93515 1.02130 1.03359 1.22611 0.95866 0.83630 1.00170 1.88030 1.18915 1.26202 1.94251 1.21858 0.83545 0.96186 0.96413 0.89690 1.22050 1.01669 1.00261 0.94172 1.21667 1.01895 0.96729 1.00186 1.20050 0.80462 0.87806 0.79262 1.90711 1.47124 1.45133 1.56782 1.48193 1.08051 1.28128 1.50278 1.23482 0.85359 0.93714 1.03515 1.21536 0.91318 0.93456 0.88021 0.88586 1.42746 1.42207 1.05416 1.47218 1.18942 1.10010 0.95003 1.15125 0.88605 1.24635 0.97535 0.97345 0.98206 1.69674 1.24467 1.34741 1.27636 0.86734 0.77683 0.87357 0.77814 1.20228 1.21270 1.20558 1.23250 0.88975 0.87062 0.99919 0.84865 1.46914 1.27138 1.10891 1.20718 1.23510 1.05859 0.86999 1.03672 1.23481 0.99058 1.02132 0.96034 1.75050 1.20219 0.97421 1.21162 1.78232 1.02699 1.17724 1.07020 1.22308 0.94420 0.90839 0.93910 0.91742 0.91086 0.91765 0.93076 0.93284 0.89407 0.90585 0.92402 0.91790 0.92871 0.91107 0.88585 0.80211 0.92620 0.80010 0.79657 0.90396 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.05 0.48 6.53 37.16 0.24 0.72 16 3 O -0.36 -4.48 8.88 -54.86 -0.49 -4.96 16 4 C 0.08 0.96 2.25 -27.88 -0.06 0.90 16 5 H 0.09 0.80 7.40 -51.93 -0.38 0.41 16 6 C -0.14 -1.63 5.82 -26.72 -0.16 -1.79 16 7 C -0.15 -1.89 9.47 37.16 0.35 -1.54 16 8 C 0.54 7.76 5.90 -10.99 -0.06 7.69 16 9 O -0.52 -9.37 16.84 -14.07 -0.24 -9.61 16 10 N -0.61 -8.10 3.32 -170.38 -0.57 -8.66 16 11 C 0.07 0.84 5.78 -3.06 -0.02 0.82 16 12 C 0.17 2.62 3.48 -66.10 -0.23 2.39 16 13 H 0.10 1.49 8.12 -51.92 -0.42 1.06 16 14 N -0.73 -14.85 4.58 -51.65 -0.24 -15.09 16 15 C -0.26 -6.56 10.46 -15.06 -0.16 -6.72 16 16 H 0.10 2.55 8.06 -52.49 -0.42 2.12 16 17 C 0.02 0.56 5.50 -17.43 -0.10 0.46 16 18 N -0.92 -27.02 13.97 55.49 0.78 -26.25 16 19 Si 0.87 20.62 27.74 -169.99 -4.71 15.91 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.01 6.52 56.52 0.37 -5.64 16 23 C 0.11 1.50 3.99 -65.66 -0.26 1.24 16 24 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 25 N -0.26 -4.19 3.09 -52.57 -0.16 -4.36 16 26 C -0.05 -0.77 8.63 -17.04 -0.15 -0.92 16 27 C -0.05 -0.80 12.05 -17.73 -0.21 -1.01 16 28 N -0.27 -5.05 12.41 30.24 0.38 -4.68 16 29 N -0.08 -1.40 13.16 60.35 0.79 -0.61 16 30 C 0.11 1.43 6.22 -2.41 -0.02 1.41 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.38 7.98 -51.93 -0.41 -0.03 16 36 H 0.09 1.04 5.52 -51.93 -0.29 0.75 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.84 7.60 -51.93 -0.39 0.44 16 40 H 0.05 0.78 7.35 -51.93 -0.38 0.40 16 41 H 0.07 0.71 7.96 -51.93 -0.41 0.29 16 42 H 0.10 1.41 5.94 -51.93 -0.31 1.10 16 43 H 0.36 7.38 3.23 -40.82 -0.13 7.25 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.18 2.48 6.59 -52.49 -0.35 2.14 16 46 H 0.19 2.35 8.06 -52.49 -0.42 1.92 16 47 H 0.08 1.08 6.25 -51.93 -0.32 0.75 16 48 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -33.49 384.51 -6.31 -39.80 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.20 Total: 9.81 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.45 Total: 2.89 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.98 Total: -59.63 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.72 Total: -14.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.71 Total: 15.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.49 -6.31 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129656846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.432 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds