Wall clock time and date at job start Tue Mar 31 2020 20:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 C 1.52999 * 109.47139 * 179.97438 * 3 2 1 5 5 O 1.42892 * 109.47188 * 180.02562 * 4 3 2 6 6 C 1.42897 * 114.00114 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47281 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00194 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00278 * 179.97438 * 7 6 5 10 10 C 1.47029 * 125.64695 * 0.02935 * 9 7 6 11 11 C 1.54328 * 107.26933 * 178.90185 * 10 9 7 12 12 H 1.09007 * 110.71775 * 96.34552 * 11 10 9 13 13 N 1.46496 * 110.71792 * 219.43925 * 11 10 9 14 14 C 1.36934 * 120.00548 * 271.15841 * 13 11 10 15 15 H 1.08004 * 119.99288 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00389 * 180.02562 * 14 13 11 17 17 N 1.31624 * 120.00257 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.55153 * 103.10298 * 337.89740 * 11 10 9 23 23 H 1.09005 * 111.00455 * 153.48905 * 22 11 10 24 24 N 1.46500 * 111.00415 * 277.33609 * 22 11 10 25 25 C 1.35315 * 125.86642 * 84.71499 * 24 22 11 26 26 C 1.35356 * 106.17247 * 179.90848 * 25 24 22 27 27 N 1.33773 * 106.49628 * 0.35415 * 26 25 24 28 28 N 1.28634 * 108.88705 * 359.77284 * 27 26 25 29 29 C 1.47431 * 125.64969 * 179.97438 * 9 7 6 30 30 H 1.09005 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47486 * 299.99989 * 1 2 3 32 32 H 1.08998 * 109.47126 * 60.00194 * 1 2 3 33 33 H 1.09000 * 109.47069 * 239.99722 * 2 1 3 34 34 H 1.08998 * 109.47126 * 119.99806 * 2 1 3 35 35 H 1.08996 * 109.46923 * 59.99666 * 3 2 1 36 36 H 1.08998 * 109.46953 * 299.99912 * 3 2 1 37 37 H 1.09000 * 109.47069 * 59.99722 * 4 3 2 38 38 H 1.09008 * 109.47126 * 299.99848 * 4 3 2 39 39 H 1.09002 * 109.47207 * 60.00096 * 6 5 4 40 40 H 1.08994 * 109.47412 * 299.99983 * 6 5 4 41 41 H 1.08999 * 109.88087 * 59.48845 * 10 9 7 42 42 H 1.09001 * 110.00976 * 298.39046 * 10 9 7 43 43 H 0.96999 * 119.99694 * 91.16365 * 13 11 10 44 44 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 45 45 H 1.07999 * 126.91175 * 0.02562 * 25 24 22 46 46 H 1.08005 * 126.74843 * 180.12659 * 26 25 24 47 47 H 1.08992 * 110.36406 * 323.00291 * 29 9 7 48 48 H 1.08997 * 110.36461 * 85.22180 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7897 0.0012 6 6 5.4708 2.9026 0.0025 7 6 5.8594 4.3586 0.0024 8 8 5.0010 5.2154 0.0018 9 7 7.1609 4.7088 0.0039 10 6 8.2987 3.7776 0.0052 11 6 9.5864 4.6278 -0.0215 12 1 9.9814 4.7612 0.9858 13 7 10.5925 4.0174 -0.8941 14 6 11.4726 3.0993 -0.3867 15 1 11.4248 2.8248 0.6567 16 6 12.4262 2.5213 -1.2135 17 7 13.2718 1.6384 -0.7259 18 14 12.5083 2.9956 -3.0184 19 1 11.6352 2.0906 -3.8083 20 1 12.0465 4.3973 -3.1834 21 1 13.9085 2.8759 -3.4984 22 6 9.1022 5.9815 -0.6048 23 1 9.7370 6.8013 -0.2685 24 7 9.0435 5.9319 -2.0678 25 6 8.0100 5.4624 -2.8043 26 6 8.3747 5.6053 -4.0999 27 7 9.6006 6.1408 -4.0926 28 7 9.9685 6.3221 -2.8734 29 6 7.6794 6.0889 0.0035 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8891 38 1 3.9330 0.9288 0.8909 39 1 5.8744 2.4192 -0.8873 40 1 5.8729 2.4189 0.8926 41 1 8.2571 3.1402 -0.8780 42 1 8.2779 3.1645 0.9062 43 1 10.6352 4.2638 -1.8313 44 1 13.9379 1.2343 -1.3038 45 1 7.0803 5.0572 -2.4330 46 1 7.7922 5.3361 -4.9687 47 1 7.0497 6.7304 -0.6128 48 1 7.7316 6.4748 1.0216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129707901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:57 Heat of formation + Delta-G solvation = 45.532981 kcal Electronic energy + Delta-G solvation = -30037.701816 eV Core-core repulsion = 25938.203813 eV Total energy + Delta-G solvation = -4099.498003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.13099 -40.27088 -38.53635 -37.53411 -35.21259 -34.52120 -33.75529 -31.62151 -30.87053 -30.51036 -29.60766 -28.22594 -27.40288 -24.31055 -23.65733 -23.46573 -22.40739 -21.76588 -21.43574 -20.40461 -19.58609 -18.19672 -17.73719 -17.38172 -16.86209 -16.43244 -15.91800 -15.87093 -15.57614 -15.09075 -14.85920 -14.68611 -14.34240 -14.12533 -13.86700 -13.67512 -13.40120 -13.31543 -12.89920 -12.80705 -12.71803 -12.56250 -12.19967 -11.92760 -11.80922 -11.57440 -11.46437 -11.45494 -11.25317 -11.21311 -10.99636 -10.98645 -10.71158 -10.24159 -10.01262 -9.93909 -9.90692 -9.74540 -9.23827 -9.13181 -8.82910 -7.62755 -5.99531 -3.41451 1.80657 2.39486 2.43128 2.46732 2.81467 3.30630 3.39678 3.48651 3.54989 3.94798 4.33898 4.44663 4.52781 4.56720 4.64206 4.69058 4.70888 4.77973 4.90532 4.92831 5.00352 5.04486 5.10805 5.13337 5.23047 5.25173 5.27733 5.35882 5.38106 5.43240 5.45550 5.46992 5.55176 5.60176 5.76027 5.85012 5.89542 5.94306 5.95962 5.99010 6.14682 6.32840 6.77687 6.80097 7.26389 7.67869 7.97650 8.16781 8.74893 8.91029 9.64663 9.77488 11.16194 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.003063 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.416192 B = 9139.877478 C =10074.746839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.059 3.941 5 O -0.366 6.366 6 C 0.049 3.951 7 C 0.532 3.468 8 O -0.523 6.523 9 N -0.620 5.620 10 C 0.063 3.937 11 C 0.174 3.826 12 H 0.102 0.898 13 N -0.731 5.731 14 C -0.268 4.268 15 H 0.096 0.904 16 C 0.022 3.978 17 N -0.921 5.921 18 Si 0.867 3.133 19 H -0.285 1.285 20 H -0.258 1.258 21 H -0.286 1.286 22 C 0.109 3.891 23 H 0.139 0.861 24 N -0.271 5.271 25 C -0.043 4.043 26 C -0.059 4.059 27 N -0.275 5.275 28 N -0.072 5.072 29 C 0.107 3.893 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.371 0.629 44 H 0.264 0.736 45 H 0.180 0.820 46 H 0.186 0.814 47 H 0.090 0.910 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 1.181 2.861 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.017 4.017 5 O -0.284 6.284 6 C -0.031 4.031 7 C 0.320 3.680 8 O -0.398 6.398 9 N -0.357 5.357 10 C -0.062 4.062 11 C 0.060 3.940 12 H 0.120 0.880 13 N -0.373 5.373 14 C -0.396 4.396 15 H 0.114 0.886 16 C -0.176 4.176 17 N -0.566 5.566 18 Si 0.695 3.305 19 H -0.211 1.211 20 H -0.183 1.183 21 H -0.212 1.212 22 C 0.005 3.995 23 H 0.156 0.844 24 N -0.065 5.065 25 C -0.194 4.194 26 C -0.216 4.216 27 N -0.141 5.141 28 N -0.051 5.051 29 C -0.016 4.016 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.206 0.794 44 H 0.074 0.926 45 H 0.197 0.803 46 H 0.203 0.797 47 H 0.109 0.891 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.527 2.207 2.884 19.862 hybrid contribution -0.657 -0.776 -1.109 1.504 sum -20.184 1.431 1.775 20.312 Atomic orbital electron populations 1.21752 0.95382 1.01721 1.02068 1.21448 0.96286 0.95947 1.02324 1.21536 0.93139 0.97271 1.03638 1.22620 0.95401 0.83205 1.00501 1.87961 1.18496 1.26445 1.95513 1.22141 0.83692 0.94103 1.03130 1.19908 0.80755 0.90716 0.76618 1.90737 1.48443 1.51858 1.48776 1.48526 1.05311 1.07969 1.73916 1.23484 0.85897 0.93805 1.03050 1.21538 0.88575 0.87416 0.96488 0.88001 1.42758 1.36033 1.50019 1.08504 1.18962 1.08799 1.15152 0.96722 0.88649 1.24642 0.97221 0.97977 0.97765 1.69690 1.20930 1.30501 1.35446 0.86795 0.77710 0.79778 0.86206 1.21131 1.18262 1.21234 1.23468 0.98634 1.03654 0.73781 0.84383 1.47261 1.11302 1.39518 1.08429 1.23522 0.96787 1.07043 0.92054 1.23547 0.95184 1.05856 0.96972 1.75118 1.11600 1.15969 1.11438 1.78409 1.13554 1.18506 0.94672 1.22495 0.91763 0.84980 1.02403 0.92599 0.92592 0.92584 0.91748 0.91768 0.90998 0.90974 0.93010 0.93044 0.90004 0.89932 0.90414 0.90310 0.79392 0.92637 0.80336 0.79724 0.89138 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.96 5.58 -26.73 -0.15 -1.10 16 4 C 0.06 0.53 5.94 37.16 0.22 0.75 16 5 O -0.37 -4.52 9.88 -55.14 -0.54 -5.06 16 6 C 0.05 0.54 5.61 36.01 0.20 0.74 16 7 C 0.53 6.97 7.70 -10.99 -0.08 6.89 16 8 O -0.52 -8.68 16.75 -14.35 -0.24 -8.92 16 9 N -0.62 -7.30 2.18 -170.38 -0.37 -7.68 16 10 C 0.06 0.83 5.87 -3.06 -0.02 0.81 16 11 C 0.17 2.64 3.46 -66.10 -0.23 2.41 16 12 H 0.10 1.44 8.11 -51.92 -0.42 1.02 16 13 N -0.73 -15.46 4.92 -51.65 -0.25 -15.71 16 14 C -0.27 -6.84 10.45 -15.06 -0.16 -7.00 16 15 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.02 0.62 5.50 -17.43 -0.10 0.52 16 17 N -0.92 -27.51 13.97 55.49 0.78 -26.73 16 18 Si 0.87 22.03 27.74 -169.99 -4.71 17.31 16 19 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 20 H -0.26 -6.53 6.52 56.52 0.37 -6.17 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 C 0.11 1.41 4.07 -65.67 -0.27 1.14 16 23 H 0.14 1.56 8.14 -51.93 -0.42 1.14 16 24 N -0.27 -4.27 2.44 -52.57 -0.13 -4.40 16 25 C -0.04 -0.62 10.02 -17.04 -0.17 -0.79 16 26 C -0.06 -0.89 12.05 -17.73 -0.21 -1.11 16 27 N -0.28 -5.21 12.41 30.24 0.38 -4.83 16 28 N -0.07 -1.37 12.23 60.35 0.74 -0.63 16 29 C 0.11 1.15 5.88 -2.41 -0.01 1.14 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.37 8.30 3.81 -40.82 -0.16 8.15 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.18 2.28 6.80 -52.49 -0.36 1.92 16 46 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 47 H 0.09 1.02 7.76 -51.93 -0.40 0.62 16 48 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -34.70 394.17 -6.88 -41.58 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.69 Total: 6.21 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.77 Total: 2.93 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 1.13 Total: -59.99 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.78 Total: -13.98 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.70 -6.88 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129707901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.113 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds