Wall clock time and date at job start Tue Mar 31 2020 20:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 C 1.52999 * 109.47139 * 179.97438 * 3 2 1 5 5 O 1.42892 * 109.47188 * 180.02562 * 4 3 2 6 6 C 1.42897 * 114.00114 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47281 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00194 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00278 * 179.97438 * 7 6 5 10 10 C 1.47029 * 125.64695 * 0.02935 * 9 7 6 11 11 C 1.54328 * 107.26933 * 178.90185 * 10 9 7 12 12 H 1.09007 * 110.71775 * 96.34552 * 11 10 9 13 13 N 1.46496 * 110.71792 * 219.43925 * 11 10 9 14 14 C 1.36934 * 120.00548 * 271.15841 * 13 11 10 15 15 H 1.08004 * 119.99288 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00389 * 180.02562 * 14 13 11 17 17 N 1.31624 * 120.00257 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.55153 * 103.10298 * 337.89740 * 11 10 9 23 23 H 1.09005 * 111.00455 * 153.48905 * 22 11 10 24 24 N 1.46500 * 111.00415 * 277.33609 * 22 11 10 25 25 C 1.35315 * 125.86642 * 84.71499 * 24 22 11 26 26 C 1.35356 * 106.17247 * 179.90848 * 25 24 22 27 27 N 1.33773 * 106.49628 * 0.35415 * 26 25 24 28 28 N 1.28634 * 108.88705 * 359.77284 * 27 26 25 29 29 C 1.47431 * 125.64969 * 179.97438 * 9 7 6 30 30 H 1.09005 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47486 * 299.99989 * 1 2 3 32 32 H 1.08998 * 109.47126 * 60.00194 * 1 2 3 33 33 H 1.09000 * 109.47069 * 239.99722 * 2 1 3 34 34 H 1.08998 * 109.47126 * 119.99806 * 2 1 3 35 35 H 1.08996 * 109.46923 * 59.99666 * 3 2 1 36 36 H 1.08998 * 109.46953 * 299.99912 * 3 2 1 37 37 H 1.09000 * 109.47069 * 59.99722 * 4 3 2 38 38 H 1.09008 * 109.47126 * 299.99848 * 4 3 2 39 39 H 1.09002 * 109.47207 * 60.00096 * 6 5 4 40 40 H 1.08994 * 109.47412 * 299.99983 * 6 5 4 41 41 H 1.08999 * 109.88087 * 59.48845 * 10 9 7 42 42 H 1.09001 * 110.00976 * 298.39046 * 10 9 7 43 43 H 0.96999 * 119.99694 * 91.16365 * 13 11 10 44 44 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 45 45 H 1.07999 * 126.91175 * 0.02562 * 25 24 22 46 46 H 1.08005 * 126.74843 * 180.12659 * 26 25 24 47 47 H 1.08992 * 110.36406 * 323.00291 * 29 9 7 48 48 H 1.08997 * 110.36461 * 85.22180 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7897 0.0012 6 6 5.4708 2.9026 0.0025 7 6 5.8594 4.3586 0.0024 8 8 5.0010 5.2154 0.0018 9 7 7.1609 4.7088 0.0039 10 6 8.2987 3.7776 0.0052 11 6 9.5864 4.6278 -0.0215 12 1 9.9814 4.7612 0.9858 13 7 10.5925 4.0174 -0.8941 14 6 11.4726 3.0993 -0.3867 15 1 11.4248 2.8248 0.6567 16 6 12.4262 2.5213 -1.2135 17 7 13.2718 1.6384 -0.7259 18 14 12.5083 2.9956 -3.0184 19 1 11.6352 2.0906 -3.8083 20 1 12.0465 4.3973 -3.1834 21 1 13.9085 2.8759 -3.4984 22 6 9.1022 5.9815 -0.6048 23 1 9.7370 6.8013 -0.2685 24 7 9.0435 5.9319 -2.0678 25 6 8.0100 5.4624 -2.8043 26 6 8.3747 5.6053 -4.0999 27 7 9.6006 6.1408 -4.0926 28 7 9.9685 6.3221 -2.8734 29 6 7.6794 6.0889 0.0035 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8891 38 1 3.9330 0.9288 0.8909 39 1 5.8744 2.4192 -0.8873 40 1 5.8729 2.4189 0.8926 41 1 8.2571 3.1402 -0.8780 42 1 8.2779 3.1645 0.9062 43 1 10.6352 4.2638 -1.8313 44 1 13.9379 1.2343 -1.3038 45 1 7.0803 5.0572 -2.4330 46 1 7.7922 5.3361 -4.9687 47 1 7.0497 6.7304 -0.6128 48 1 7.7316 6.4748 1.0216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129707901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:56 Heat of formation + Delta-G solvation = 22.915264 kcal Electronic energy + Delta-G solvation = -30038.682594 eV Core-core repulsion = 25938.203813 eV Total energy + Delta-G solvation = -4100.478781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.36030 -41.31996 -39.51580 -38.52499 -36.13830 -35.80372 -34.99812 -33.44325 -32.05513 -31.59875 -30.41513 -29.49549 -28.28043 -25.71808 -24.95358 -24.15311 -23.66110 -23.04883 -22.03460 -21.66101 -20.61978 -19.92972 -18.88671 -18.42113 -17.67288 -17.40065 -17.15061 -16.85104 -16.66628 -16.45299 -16.00433 -15.76928 -15.60613 -15.22007 -14.93306 -14.71756 -14.63712 -14.28555 -14.09544 -14.00637 -13.74308 -13.57429 -13.24534 -13.09556 -12.96171 -12.81815 -12.76100 -12.52104 -12.43000 -12.14270 -11.96978 -11.96874 -11.88655 -11.87769 -11.52718 -11.32134 -11.04707 -10.95994 -10.70136 -10.38081 -9.85814 -9.50163 -8.11599 -5.46102 0.58909 1.26398 1.31935 1.35685 1.43395 1.44246 1.49446 1.57731 2.38302 2.68686 2.94708 3.14622 3.35028 3.40753 3.59031 3.61053 3.86772 3.98316 3.99201 4.07144 4.14328 4.16821 4.18970 4.23367 4.25122 4.27055 4.41627 4.44950 4.48002 4.56437 4.69198 4.74598 4.84509 4.91584 4.91893 4.94771 4.99432 5.04879 5.19119 5.24751 5.35263 5.44978 5.60341 5.69845 6.03411 6.12163 6.27277 6.95085 6.98695 7.48405 7.70037 7.83344 9.07979 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.003063 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.416192 B = 9139.877478 C =10074.746839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.048 3.952 7 C 0.535 3.465 8 O -0.560 6.560 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.163 3.837 12 H 0.119 0.881 13 N -0.742 5.742 14 C -0.225 4.225 15 H 0.086 0.914 16 C -0.040 4.040 17 N -0.968 5.968 18 Si 0.918 3.082 19 H -0.288 1.288 20 H -0.259 1.259 21 H -0.299 1.299 22 C 0.109 3.891 23 H 0.156 0.844 24 N -0.269 5.269 25 C -0.035 4.035 26 C -0.062 4.062 27 N -0.311 5.311 28 N -0.111 5.111 29 C 0.114 3.886 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.365 0.635 44 H 0.258 0.742 45 H 0.198 0.802 46 H 0.217 0.783 47 H 0.090 0.910 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.498 1.324 3.570 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.154 4.154 4 C -0.021 4.021 5 O -0.312 6.312 6 C -0.032 4.032 7 C 0.324 3.676 8 O -0.438 6.438 9 N -0.348 5.348 10 C -0.047 4.047 11 C 0.052 3.948 12 H 0.137 0.863 13 N -0.385 5.385 14 C -0.355 4.355 15 H 0.103 0.897 16 C -0.233 4.233 17 N -0.618 5.618 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.184 1.184 21 H -0.226 1.226 22 C 0.006 3.994 23 H 0.173 0.827 24 N -0.063 5.063 25 C -0.186 4.186 26 C -0.220 4.220 27 N -0.176 5.176 28 N -0.090 5.090 29 C -0.009 4.009 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.200 0.800 44 H 0.067 0.933 45 H 0.215 0.785 46 H 0.233 0.767 47 H 0.108 0.892 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.604 2.396 3.609 22.034 hybrid contribution -0.175 -0.759 -1.244 1.468 sum -21.778 1.637 2.365 21.967 Atomic orbital electron populations 1.21766 0.95081 1.02233 1.01960 1.21432 0.96538 0.94813 1.02852 1.21537 0.92843 0.98226 1.02807 1.22801 0.95713 0.82064 1.01543 1.87931 1.19207 1.28363 1.95748 1.22250 0.83481 0.92719 1.04712 1.20259 0.80388 0.91330 0.75627 1.90729 1.49310 1.53057 1.50688 1.48436 1.04793 1.08173 1.73373 1.23112 0.84898 0.93239 1.03500 1.21879 0.88164 0.88410 0.96389 0.86328 1.42793 1.36898 1.49795 1.09003 1.19045 1.07331 1.13320 0.95832 0.89669 1.25145 0.98447 0.99435 1.00311 1.69792 1.22694 1.33101 1.36214 0.85967 0.76582 0.79129 0.83509 1.21532 1.18367 1.22585 1.23672 1.00386 1.02767 0.72560 0.82662 1.47490 1.10950 1.38701 1.09167 1.23837 0.96913 1.06058 0.91830 1.24168 0.94349 1.04923 0.98564 1.75066 1.13375 1.17269 1.11855 1.78349 1.14958 1.20432 0.95228 1.22628 0.89918 0.84458 1.03930 0.91772 0.92671 0.92779 0.91287 0.91130 0.91759 0.91895 0.92062 0.91792 0.88610 0.87925 0.91536 0.88508 0.80038 0.93296 0.78514 0.76667 0.89154 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.32 5.93 30.59 0.18 -1.14 16 3 C -0.12 -1.74 5.58 30.59 0.17 -1.57 16 4 C 0.05 0.88 5.94 71.98 0.43 1.30 16 5 O -0.39 -8.96 9.88 -129.94 -1.28 -10.24 16 6 C 0.05 0.91 5.61 71.24 0.40 1.31 16 7 C 0.53 12.50 7.70 87.66 0.68 13.18 16 8 O -0.56 -17.43 16.75 16.00 0.27 -17.16 16 9 N -0.61 -12.31 2.18 -811.36 -1.77 -14.08 16 10 C 0.08 1.76 5.87 86.73 0.51 2.27 16 11 C 0.16 4.47 3.46 46.18 0.16 4.63 16 12 H 0.12 2.93 8.11 -2.38 -0.02 2.91 16 13 N -0.74 -30.03 4.92 -317.33 -1.56 -31.59 16 14 C -0.22 -11.26 10.45 84.03 0.88 -10.38 16 15 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 16 C -0.04 -2.25 5.50 84.86 0.47 -1.78 16 17 N -0.97 -58.77 13.97 21.65 0.30 -58.47 16 18 Si 0.92 46.33 27.74 68.60 1.90 48.23 16 19 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 20 H -0.26 -12.94 6.52 99.48 0.65 -12.29 16 21 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 22 C 0.11 2.50 4.07 46.45 0.19 2.69 16 23 H 0.16 3.05 8.14 -2.38 -0.02 3.03 16 24 N -0.27 -7.91 2.44 -320.24 -0.78 -8.69 16 25 C -0.03 -0.92 10.02 83.49 0.84 -0.09 16 26 C -0.06 -1.79 12.05 83.73 1.01 -0.78 16 27 N -0.31 -11.45 12.41 -58.25 -0.72 -12.18 16 28 N -0.11 -4.10 12.23 37.02 0.45 -3.65 16 29 C 0.11 2.04 5.88 86.93 0.51 2.55 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.73 8.03 -2.39 -0.02 1.71 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.37 15.81 3.81 -92.71 -0.35 15.46 16 44 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 45 H 0.20 4.42 6.80 -2.91 -0.02 4.40 16 46 H 0.22 4.44 8.06 -2.91 -0.02 4.42 16 47 H 0.09 1.74 7.76 -2.39 -0.02 1.72 16 48 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -76.06 394.17 4.48 -71.58 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.54 Total: 24.93 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 7.13 Total: 11.32 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -4.08 Total: -128.66 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.02 Total: -27.40 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -76.06 4.48 -71.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129707901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.496 kcal (2) G-P(sol) polarization free energy of solvation -76.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds