Wall clock time and date at job start Tue Mar 31 2020 20:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 H 1.09001 * 109.47144 * 304.99928 * 3 2 1 5 5 C 1.52998 * 109.47153 * 184.99799 * 3 2 1 6 6 O 1.42902 * 109.47002 * 64.99515 * 3 2 1 7 7 C 1.42900 * 113.99948 * 209.99969 * 6 3 2 8 8 C 1.50705 * 109.47176 * 180.02562 * 7 6 3 9 9 O 1.21288 * 119.99424 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00266 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.64661 * 359.97438 * 10 8 7 12 12 C 1.54324 * 107.27357 * 178.97493 * 11 10 8 13 13 H 1.08999 * 110.71977 * 96.34351 * 12 11 10 14 14 N 1.46490 * 110.72127 * 219.44478 * 12 11 10 15 15 C 1.36935 * 120.00121 * 271.15198 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.55155 * 103.09699 * 337.89886 * 12 11 10 24 24 H 1.09008 * 111.00198 * 153.48670 * 23 12 11 25 25 N 1.46500 * 111.00254 * 277.33408 * 23 12 11 26 26 C 1.35309 * 125.86669 * 84.71885 * 25 23 12 27 27 C 1.35352 * 106.17389 * 179.90442 * 26 25 23 28 28 N 1.33765 * 106.49788 * 0.35078 * 27 26 25 29 29 N 1.28631 * 108.88727 * 359.77664 * 28 27 26 30 30 C 1.47423 * 125.64984 * 180.02562 * 10 8 7 31 31 H 1.08997 * 109.47149 * 299.99756 * 1 2 3 32 32 H 1.09001 * 109.46554 * 60.00529 * 1 2 3 33 33 H 1.09002 * 109.46722 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47625 * 240.00017 * 2 1 3 35 35 H 1.09000 * 109.47347 * 119.99940 * 2 1 3 36 36 H 1.09002 * 109.47114 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47201 * 300.00094 * 5 3 2 38 38 H 1.09003 * 109.47091 * 60.00200 * 5 3 2 39 39 H 1.08992 * 109.47239 * 60.00610 * 7 6 3 40 40 H 1.09001 * 109.47307 * 300.00151 * 7 6 3 41 41 H 1.09000 * 109.88588 * 59.55890 * 11 10 8 42 42 H 1.09007 * 110.01334 * 298.46579 * 11 10 8 43 43 H 0.97000 * 120.00577 * 91.15797 * 14 12 11 44 44 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 45 45 H 1.08000 * 126.91630 * 0.02562 * 26 25 23 46 46 H 1.08002 * 126.75167 * 180.12577 * 27 26 25 47 47 H 1.08998 * 110.36291 * 322.93285 * 30 10 8 48 48 H 1.08999 * 110.36601 * 85.14353 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0814 1.2210 7 6 1.4558 3.4903 1.1002 8 6 1.0636 4.0574 2.4403 9 8 0.9703 3.3269 3.4040 10 7 0.8166 5.3761 2.5679 11 6 0.8927 6.3705 1.4876 12 6 0.5040 7.7357 2.0933 13 1 1.3932 8.3004 2.3735 14 7 -0.3208 8.5024 1.1564 15 6 0.2726 9.3272 0.2384 16 1 1.3487 9.4122 0.2048 17 6 -0.5090 10.0542 -0.6491 18 7 -1.8206 9.9510 -0.6078 19 14 0.3005 11.1788 -1.9018 20 1 -0.7456 11.8373 -2.7248 21 1 1.0981 12.2135 -1.1955 22 1 1.1925 10.3804 -2.7804 23 6 -0.3151 7.3421 3.3508 24 1 -0.2641 8.1223 4.1103 25 7 -1.7058 7.0442 2.9995 26 6 -2.1743 5.8547 2.5563 27 6 -3.5026 6.0228 2.3580 28 7 -3.7768 7.2924 2.6779 29 7 -2.6911 7.8708 3.0541 30 6 0.4264 6.0606 3.8139 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8935 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.9281 2.4721 -0.1261 37 1 3.9995 0.9053 0.7162 38 1 3.8532 0.9571 -1.0571 39 1 0.6618 3.6808 0.3783 40 1 2.3768 3.9645 0.7609 41 1 0.1968 6.1067 0.6912 42 1 1.9078 6.4156 1.0929 43 1 -1.2873 8.4260 1.1863 44 1 -2.2409 9.3668 0.0425 45 1 -1.6035 4.9521 2.3952 46 1 -4.2028 5.2792 2.0068 47 1 -0.2384 5.4280 4.4020 48 1 1.3103 6.3241 4.3947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129778593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:27 Heat of formation + Delta-G solvation = 45.904647 kcal Electronic energy + Delta-G solvation = -30664.356748 eV Core-core repulsion = 26564.874861 eV Total energy + Delta-G solvation = -4099.481887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.01427 -40.25530 -38.76513 -37.63893 -34.64322 -34.03576 -33.69291 -31.41168 -30.72699 -30.27630 -29.90309 -27.70628 -27.60393 -24.33061 -23.83179 -23.51684 -22.33426 -21.88585 -21.28812 -20.33719 -19.60663 -17.89079 -17.61398 -17.44047 -16.80591 -16.39596 -16.06937 -15.59018 -15.15603 -14.76404 -14.56843 -14.41359 -14.18883 -14.00142 -13.82209 -13.71197 -13.53278 -13.32069 -13.05947 -12.91020 -12.69892 -12.29366 -12.25361 -11.95795 -11.83997 -11.60688 -11.43482 -11.30190 -11.25780 -10.86883 -10.84231 -10.82006 -10.57295 -10.12125 -9.97117 -9.85686 -9.80083 -9.38314 -9.19769 -9.04580 -8.79768 -7.37831 -6.28970 -3.36575 1.91680 2.44066 2.45969 2.55130 2.94219 3.40351 3.43524 3.60245 3.62350 4.00636 4.36602 4.45553 4.51928 4.64199 4.69819 4.77069 4.79166 4.84128 4.94070 4.99763 5.07593 5.10857 5.18651 5.27618 5.31905 5.35610 5.36629 5.40749 5.44731 5.45934 5.53516 5.68450 5.68804 5.73288 5.85439 5.86931 5.89862 6.02884 6.04164 6.10919 6.19955 6.44007 6.87599 6.88475 7.29990 7.55554 8.00377 8.54592 8.87124 8.92843 9.80824 9.89639 11.16949 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009847 B = 0.003690 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.698260 B = 7585.367369 C = 8916.398207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.082 3.918 4 H 0.063 0.937 5 C -0.176 4.176 6 O -0.356 6.356 7 C 0.049 3.951 8 C 0.532 3.468 9 O -0.523 6.523 10 N -0.619 5.619 11 C 0.064 3.936 12 C 0.174 3.826 13 H 0.094 0.906 14 N -0.717 5.717 15 C -0.358 4.358 16 H 0.070 0.930 17 C -0.031 4.031 18 N -0.925 5.925 19 Si 1.082 2.918 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.294 1.294 23 C 0.110 3.890 24 H 0.135 0.865 25 N -0.270 5.270 26 C -0.044 4.044 27 C -0.057 4.057 28 N -0.271 5.271 29 N -0.071 5.071 30 C 0.107 3.893 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.376 0.624 44 H 0.260 0.740 45 H 0.177 0.823 46 H 0.185 0.815 47 H 0.090 0.910 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -16.235 3.093 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.024 3.976 4 H 0.081 0.919 5 C -0.234 4.234 6 O -0.274 6.274 7 C -0.031 4.031 8 C 0.319 3.681 9 O -0.398 6.398 10 N -0.356 5.356 11 C -0.062 4.062 12 C 0.059 3.941 13 H 0.112 0.888 14 N -0.360 5.360 15 C -0.488 4.488 16 H 0.088 0.912 17 C -0.231 4.231 18 N -0.567 5.567 19 Si 0.911 3.089 20 H -0.208 1.208 21 H -0.220 1.220 22 H -0.221 1.221 23 C 0.006 3.994 24 H 0.153 0.847 25 N -0.063 5.063 26 C -0.196 4.196 27 C -0.214 4.214 28 N -0.137 5.137 29 N -0.050 5.050 30 C -0.016 4.016 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.213 0.787 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.202 0.798 47 H 0.108 0.892 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.198 -14.234 2.809 16.664 hybrid contribution 0.683 -2.077 0.559 2.256 sum 8.881 -16.311 3.368 18.874 Atomic orbital electron populations 1.21750 0.95232 1.01689 1.02404 1.21616 0.96788 0.94544 1.02681 1.22249 0.94366 0.94209 0.86753 0.91880 1.22307 0.96017 1.02538 1.02518 1.88021 1.89442 1.17822 1.32118 1.22171 1.01813 0.83959 0.95136 1.19924 0.77408 0.80341 0.90380 1.90734 1.51107 1.57754 1.40249 1.48523 1.68985 1.06595 1.11504 1.23525 1.02358 0.89902 0.90396 1.21483 0.94239 0.90743 0.87670 0.88836 1.42422 1.04977 1.50254 1.38298 1.19972 0.92963 1.22759 1.13151 0.91208 1.25902 0.95787 1.00676 1.00777 1.70860 1.08802 1.39568 1.37514 0.83242 0.74515 0.75607 0.75526 1.20835 1.21954 1.22079 1.23418 0.75905 0.98648 1.01447 0.84721 1.47192 1.09235 1.07886 1.42005 1.23462 0.96290 0.92550 1.07252 1.23511 0.94627 0.95945 1.07321 1.75121 1.18098 1.06084 1.14356 1.78408 0.90011 1.17435 1.19189 1.22486 0.99742 0.91693 0.87725 0.91757 0.92955 0.92712 0.90694 0.90977 0.92384 0.91634 0.91495 0.90108 0.90225 0.90558 0.90835 0.78741 0.92860 0.80615 0.79839 0.89198 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.81 37.16 0.36 -0.98 16 2 C -0.12 -0.99 5.64 -26.73 -0.15 -1.14 16 3 C 0.08 0.76 2.72 -26.73 -0.07 0.69 16 4 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 5 C -0.18 -1.41 9.53 37.16 0.35 -1.06 16 6 O -0.36 -4.40 9.06 -55.14 -0.50 -4.89 16 7 C 0.05 0.56 5.42 36.01 0.20 0.76 16 8 C 0.53 7.28 7.71 -10.98 -0.08 7.20 16 9 O -0.52 -8.93 16.76 -14.36 -0.24 -9.17 16 10 N -0.62 -7.81 2.18 -170.38 -0.37 -8.18 16 11 C 0.06 0.90 5.87 -3.07 -0.02 0.88 16 12 C 0.17 2.84 3.46 -66.10 -0.23 2.61 16 13 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 14 N -0.72 -16.26 5.12 -51.66 -0.26 -16.52 16 15 C -0.36 -9.20 9.97 -15.06 -0.15 -9.35 16 16 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 17 C -0.03 -0.86 5.50 -17.43 -0.10 -0.96 16 18 N -0.93 -28.12 13.70 55.49 0.76 -27.36 16 19 Si 1.08 24.50 29.92 -169.99 -5.09 19.41 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.11 1.55 4.07 -65.67 -0.27 1.29 16 24 H 0.14 1.71 8.14 -51.92 -0.42 1.29 16 25 N -0.27 -4.53 2.44 -52.57 -0.13 -4.66 16 26 C -0.04 -0.70 10.02 -17.05 -0.17 -0.87 16 27 C -0.06 -0.93 12.05 -17.74 -0.21 -1.15 16 28 N -0.27 -5.42 12.41 30.23 0.38 -5.04 16 29 N -0.07 -1.43 12.23 60.35 0.74 -0.69 16 30 C 0.11 1.26 5.88 -2.41 -0.01 1.24 16 31 H 0.06 0.68 7.82 -51.93 -0.41 0.27 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.08 0.78 7.87 -51.93 -0.41 0.38 16 41 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.38 9.34 4.78 -40.82 -0.20 9.14 16 44 H 0.26 8.06 6.77 -40.82 -0.28 7.78 16 45 H 0.18 2.45 6.81 -52.49 -0.36 2.10 16 46 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 47 H 0.09 1.10 7.76 -51.93 -0.40 0.70 16 48 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -34.41 393.63 -6.89 -41.30 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.55 Total: 10.71 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.55 Total: -0.82 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 1.11 Total: -62.47 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.74 Total: -14.07 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.09 Total: 19.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.41 -6.89 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129778593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.205 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds