Wall clock time and date at job start Tue Mar 31 2020 19:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50706 * 109.46735 * 180.02562 * 3 2 1 5 5 C 1.38044 * 126.28567 * 269.99395 * 4 3 2 6 6 C 1.47428 * 126.42042 * 0.02564 * 5 4 3 7 7 O 1.21604 * 119.99672 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00259 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99896 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46934 * 179.97438 * 9 8 6 11 11 N 1.46896 * 109.46850 * 180.02562 * 10 9 8 12 12 C 1.46905 * 110.99677 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47079 * 179.97438 * 12 11 10 14 14 O 1.21291 * 119.99588 * 359.97438 * 13 12 11 15 15 N 1.34765 * 120.00263 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00545 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99363 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00286 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99787 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99979 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47059 * 90.00436 * 20 18 16 22 22 H 1.48505 * 109.47241 * 209.99746 * 20 18 16 23 23 H 1.48502 * 109.47386 * 329.99990 * 20 18 16 24 24 C 1.41292 * 107.16758 * 180.02562 * 5 4 3 25 25 N 1.30452 * 108.02362 * 0.02562 * 24 5 4 26 26 N 1.34252 * 126.29319 * 89.69060 * 4 3 2 27 27 C 1.46498 * 125.75385 * 359.97161 * 26 4 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 0.96999 * 119.99530 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47032 * 300.00090 * 9 8 6 37 37 H 1.08999 * 109.46764 * 59.99908 * 9 8 6 38 38 H 1.08995 * 109.47198 * 300.00257 * 10 9 8 39 39 H 1.09003 * 109.46749 * 59.99983 * 10 9 8 40 40 H 1.00899 * 111.00311 * 56.04835 * 11 10 9 41 41 H 1.09003 * 109.47273 * 299.99852 * 12 11 10 42 42 H 1.08999 * 109.47453 * 60.00153 * 12 11 10 43 43 H 0.97007 * 120.00271 * 0.02562 * 15 13 12 44 44 H 0.97005 * 119.99996 * 180.02562 * 19 18 16 45 45 H 1.08007 * 125.98826 * 179.97438 * 24 5 4 46 46 H 1.09002 * 109.47518 * 90.00299 * 27 26 4 47 47 H 1.09007 * 109.46969 * 209.99975 * 27 26 4 48 48 H 1.08999 * 109.47736 * 330.00146 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3644 1.4423 1.1118 6 6 3.9268 1.4418 2.5196 7 8 2.7406 1.4408 2.7875 8 7 4.8413 1.4412 3.5097 9 6 4.4063 1.4412 4.9086 10 6 5.6323 1.4399 5.8238 11 7 5.1961 1.4393 7.2265 12 6 6.3494 1.4386 8.1364 13 6 5.8638 1.4386 9.5631 14 8 4.6739 1.4396 9.7986 15 7 6.7514 1.4375 10.5771 16 6 6.3096 1.4381 11.8750 17 1 5.2502 1.4390 12.0847 18 6 7.2248 1.4364 12.9205 19 7 6.8013 1.4365 14.1645 20 14 9.0572 1.4342 12.5576 21 1 9.5446 2.8337 12.4622 22 1 9.7775 0.7328 13.6506 23 1 9.3065 0.7344 11.2718 24 6 5.6992 1.4429 0.6484 25 7 5.6738 1.4438 -0.6558 26 7 4.3412 1.4367 -1.0830 27 6 3.8891 1.4288 -2.4765 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 5.7874 1.4416 3.2959 36 1 3.8081 2.3315 5.1030 37 1 3.8073 0.5515 5.1027 38 1 6.2301 0.5495 5.6292 39 1 6.2316 2.3294 5.6296 40 1 4.5859 0.6582 7.4152 41 1 6.9528 0.5486 7.9577 42 1 6.9531 2.3286 7.9586 43 1 7.7030 1.4371 10.3888 44 1 7.4402 1.4357 14.8944 45 1 6.5854 1.4433 1.2659 46 1 3.7766 2.4545 -2.8278 47 1 4.6237 0.9118 -3.0939 48 1 2.9306 0.9143 -2.5446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130775749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:33 Heat of formation + Delta-G solvation = -1.811052 kcal Electronic energy + Delta-G solvation = -27758.755756 eV Core-core repulsion = 23657.204761 eV Total energy + Delta-G solvation = -4101.550995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.91515 -39.35248 -38.48012 -36.35907 -35.67459 -34.32581 -33.84630 -33.62102 -31.66367 -31.10237 -29.67263 -27.65557 -26.94054 -25.97455 -23.84462 -22.83524 -22.15583 -22.11687 -20.77803 -19.92512 -19.38455 -18.38214 -17.90869 -16.42911 -16.26229 -16.11253 -15.97588 -15.77450 -15.29979 -15.10893 -14.98071 -14.82623 -14.28751 -13.99589 -13.92461 -13.73505 -13.50318 -13.36658 -13.15245 -13.10548 -13.00560 -12.64655 -12.51967 -12.24946 -11.92375 -11.85703 -11.68628 -11.54960 -11.46500 -11.35823 -11.14599 -10.98107 -10.59510 -10.01585 -9.96815 -9.84703 -9.56996 -9.27791 -8.91027 -8.61486 -8.22234 -8.16520 -6.30464 -3.82016 1.13472 1.80740 1.87590 3.00271 3.02352 3.07161 3.15381 3.25995 3.74013 3.96700 4.01072 4.10313 4.24019 4.39838 4.53617 4.56723 4.63904 4.73029 4.82255 4.83225 4.86668 4.89182 5.05078 5.08202 5.12066 5.22927 5.32465 5.36928 5.40139 5.49655 5.58475 5.70182 5.77492 5.82879 5.86602 5.88736 5.90758 5.94995 6.01139 6.28951 6.39240 7.00152 7.11158 7.38650 7.50624 7.58515 8.14230 8.15095 8.60110 8.95562 9.42795 9.82871 10.82638 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.001603 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.678762 B =17463.387904 C =18466.463988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.067 4.067 4 C 0.163 3.837 5 C -0.296 4.296 6 C 0.595 3.405 7 O -0.543 6.543 8 N -0.726 5.726 9 C 0.123 3.877 10 C 0.049 3.951 11 N -0.665 5.665 12 C 0.050 3.950 13 C 0.449 3.551 14 O -0.563 6.563 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.083 3.917 25 N -0.299 5.299 26 N -0.363 5.363 27 C 0.094 3.906 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.397 0.603 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.354 0.646 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.190 0.810 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -1.661 -36.107 36.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.106 4.106 4 C 0.030 3.970 5 C -0.311 4.311 6 C 0.383 3.617 7 O -0.421 6.421 8 N -0.378 5.378 9 C 0.000 4.000 10 C -0.081 4.081 11 N -0.299 5.299 12 C -0.083 4.083 13 C 0.235 3.765 14 O -0.445 6.445 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.105 4.105 25 N -0.117 5.117 26 N -0.142 5.142 27 C -0.047 4.047 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.231 0.769 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.174 0.826 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.206 0.794 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.347 -0.982 -36.698 36.863 hybrid contribution 2.142 -0.871 0.405 2.348 sum -1.205 -1.853 -36.293 36.360 Atomic orbital electron populations 1.21742 0.94805 1.02042 1.02186 1.21393 0.96480 0.94761 1.02358 1.20594 0.85581 0.99342 1.05064 1.21557 0.94690 0.94546 0.86206 1.19987 0.92824 1.24717 0.93558 1.17128 0.85422 0.75648 0.83515 1.90758 1.16400 1.50750 1.84172 1.45638 1.09591 1.76393 1.06150 1.21246 0.96732 1.03517 0.78550 1.22088 0.96070 1.01008 0.88944 1.59909 1.17629 1.51788 1.00541 1.21703 0.92703 1.01407 0.92486 1.19683 0.87053 0.84095 0.85702 1.90577 1.15895 1.53593 1.84408 1.42196 1.07051 1.67113 1.06619 1.19442 0.96782 1.48074 0.79124 0.86251 1.25040 0.98503 0.97654 0.94966 1.69626 1.34923 1.49344 0.98203 0.86663 0.85328 0.78889 0.78430 1.19599 1.20205 1.19546 1.24026 0.97206 0.97238 0.92038 1.77198 0.96042 1.25196 1.13305 1.48354 1.04043 1.55350 1.06405 1.21990 1.01401 1.03940 0.77322 0.92848 0.92419 0.91884 0.92665 0.90886 0.90735 0.86782 0.76898 0.90102 0.91291 0.94891 0.90429 0.82624 0.93609 0.89331 0.79692 0.91616 0.79359 0.90191 0.88737 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.11 -0.77 5.92 -26.73 -0.16 -0.93 16 3 C -0.07 -0.49 4.67 -27.88 -0.13 -0.62 16 4 C 0.16 1.44 6.26 -81.60 -0.51 0.93 16 5 C -0.30 -2.90 6.13 -105.07 -0.64 -3.54 16 6 C 0.60 6.74 7.81 -12.52 -0.10 6.64 16 7 O -0.54 -7.75 14.84 5.27 0.08 -7.68 16 8 N -0.73 -6.71 5.55 -61.38 -0.34 -7.05 16 9 C 0.12 1.34 5.93 -4.04 -0.02 1.32 16 10 C 0.05 0.52 5.80 -3.83 -0.02 0.49 16 11 N -0.67 -9.94 6.12 -115.05 -0.70 -10.65 16 12 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 13 C 0.45 10.12 7.82 -10.99 -0.09 10.04 16 14 O -0.56 -15.15 15.78 5.55 0.09 -15.06 16 15 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 16 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 17 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 20 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 24 C 0.08 0.69 11.50 -16.98 -0.20 0.49 16 25 N -0.30 -2.84 12.50 30.86 0.39 -2.45 16 26 N -0.36 -2.88 3.98 -63.34 -0.25 -3.14 16 27 C 0.09 0.35 11.06 59.85 0.66 1.01 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.37 7.71 -51.93 -0.40 -0.03 16 34 H 0.11 1.07 6.50 -51.93 -0.34 0.73 16 35 H 0.40 2.51 7.43 -40.82 -0.30 2.20 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.19 0.91 7.50 -52.48 -0.39 0.51 16 46 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.09 0.17 7.63 -51.93 -0.40 -0.23 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -36.91 403.44 -7.23 -44.14 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -7.45 Total: 11.97 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.12 Total: 8.30 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.19 Total: -62.30 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.74 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.91 -7.23 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130775749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.327 kcal (2) G-P(sol) polarization free energy of solvation -36.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds