Wall clock time and date at job start Tue Mar 31 2020 19:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50706 * 109.46735 * 180.02562 * 3 2 1 5 5 C 1.38044 * 126.28567 * 269.99395 * 4 3 2 6 6 C 1.47428 * 126.42042 * 0.02564 * 5 4 3 7 7 O 1.21604 * 119.99672 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00259 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99896 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46934 * 179.97438 * 9 8 6 11 11 N 1.46896 * 109.46850 * 180.02562 * 10 9 8 12 12 C 1.46905 * 110.99677 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47079 * 179.97438 * 12 11 10 14 14 O 1.21291 * 119.99588 * 359.97438 * 13 12 11 15 15 N 1.34765 * 120.00263 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00545 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99363 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00286 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99787 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99979 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47059 * 90.00436 * 20 18 16 22 22 H 1.48505 * 109.47241 * 209.99746 * 20 18 16 23 23 H 1.48502 * 109.47386 * 329.99990 * 20 18 16 24 24 C 1.41292 * 107.16758 * 180.02562 * 5 4 3 25 25 N 1.30452 * 108.02362 * 0.02562 * 24 5 4 26 26 N 1.34252 * 126.29319 * 89.69060 * 4 3 2 27 27 C 1.46498 * 125.75385 * 359.97161 * 26 4 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 0.96999 * 119.99530 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47032 * 300.00090 * 9 8 6 37 37 H 1.08999 * 109.46764 * 59.99908 * 9 8 6 38 38 H 1.08995 * 109.47198 * 300.00257 * 10 9 8 39 39 H 1.09003 * 109.46749 * 59.99983 * 10 9 8 40 40 H 1.00899 * 111.00311 * 56.04835 * 11 10 9 41 41 H 1.09003 * 109.47273 * 299.99852 * 12 11 10 42 42 H 1.08999 * 109.47453 * 60.00153 * 12 11 10 43 43 H 0.97007 * 120.00271 * 0.02562 * 15 13 12 44 44 H 0.97005 * 119.99996 * 180.02562 * 19 18 16 45 45 H 1.08007 * 125.98826 * 179.97438 * 24 5 4 46 46 H 1.09002 * 109.47518 * 90.00299 * 27 26 4 47 47 H 1.09007 * 109.46969 * 209.99975 * 27 26 4 48 48 H 1.08999 * 109.47736 * 330.00146 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3644 1.4423 1.1118 6 6 3.9268 1.4418 2.5196 7 8 2.7406 1.4408 2.7875 8 7 4.8413 1.4412 3.5097 9 6 4.4063 1.4412 4.9086 10 6 5.6323 1.4399 5.8238 11 7 5.1961 1.4393 7.2265 12 6 6.3494 1.4386 8.1364 13 6 5.8638 1.4386 9.5631 14 8 4.6739 1.4396 9.7986 15 7 6.7514 1.4375 10.5771 16 6 6.3096 1.4381 11.8750 17 1 5.2502 1.4390 12.0847 18 6 7.2248 1.4364 12.9205 19 7 6.8013 1.4365 14.1645 20 14 9.0572 1.4342 12.5576 21 1 9.5446 2.8337 12.4622 22 1 9.7775 0.7328 13.6506 23 1 9.3065 0.7344 11.2718 24 6 5.6992 1.4429 0.6484 25 7 5.6738 1.4438 -0.6558 26 7 4.3412 1.4367 -1.0830 27 6 3.8891 1.4288 -2.4765 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 5.7874 1.4416 3.2959 36 1 3.8081 2.3315 5.1030 37 1 3.8073 0.5515 5.1027 38 1 6.2301 0.5495 5.6292 39 1 6.2316 2.3294 5.6296 40 1 4.5859 0.6582 7.4152 41 1 6.9528 0.5486 7.9577 42 1 6.9531 2.3286 7.9586 43 1 7.7030 1.4371 10.3888 44 1 7.4402 1.4357 14.8944 45 1 6.5854 1.4433 1.2659 46 1 3.7766 2.4545 -2.8278 47 1 4.6237 0.9118 -3.0939 48 1 2.9306 0.9143 -2.5446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130775749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:32 Heat of formation + Delta-G solvation = -32.661942 kcal Electronic energy + Delta-G solvation = -27760.093551 eV Core-core repulsion = 23657.204761 eV Total energy + Delta-G solvation = -4102.888790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53416 -40.35781 -40.11832 -37.44121 -36.30857 -35.97142 -35.10358 -34.21072 -33.73090 -31.75509 -30.66900 -28.49220 -27.44343 -27.32692 -25.37750 -23.66183 -22.98949 -22.70180 -21.47009 -21.26262 -20.61333 -20.25159 -18.66430 -17.72502 -17.28276 -17.00355 -16.82933 -16.70520 -16.63631 -16.04919 -15.87786 -15.66271 -15.47943 -15.16438 -14.99945 -14.75676 -14.49617 -14.40694 -14.16228 -14.04526 -13.86060 -13.54710 -13.49629 -13.34925 -13.13969 -12.94995 -12.56093 -12.44030 -12.39201 -12.33765 -12.20936 -11.97025 -11.95785 -11.55670 -11.49821 -10.89927 -10.43718 -10.40925 -10.23534 -10.14094 -9.58820 -9.34845 -8.39853 -6.01191 0.47116 1.15245 1.31813 1.38031 1.38254 1.46774 1.97507 2.16588 2.25099 2.46446 2.86396 3.16566 3.44748 3.46599 3.58335 3.86866 3.91727 4.04365 4.09540 4.14886 4.17857 4.21466 4.37585 4.39698 4.47658 4.51849 4.52040 4.57278 4.63442 4.64411 4.77681 4.88507 4.92913 4.97829 5.03415 5.17060 5.30515 5.38275 5.41250 5.47554 5.54408 5.86115 5.90105 6.03212 6.33957 6.48854 6.61062 6.67283 6.89614 7.34281 7.41253 7.98532 8.77888 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.001603 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.678762 B =17463.387904 C =18466.463988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.063 4.063 4 C 0.158 3.842 5 C -0.320 4.320 6 C 0.591 3.409 7 O -0.582 6.582 8 N -0.711 5.711 9 C 0.131 3.869 10 C 0.059 3.941 11 N -0.690 5.690 12 C 0.065 3.935 13 C 0.446 3.554 14 O -0.617 6.617 15 N -0.590 5.590 16 C -0.331 4.331 17 H 0.053 0.947 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.228 1.228 24 C 0.088 3.912 25 N -0.323 5.323 26 N -0.360 5.360 27 C 0.082 3.918 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.346 0.654 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.391 0.609 44 H 0.279 0.721 45 H 0.220 0.780 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -1.784 -39.674 39.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.101 4.101 4 C 0.024 3.976 5 C -0.335 4.335 6 C 0.380 3.620 7 O -0.463 6.463 8 N -0.364 5.364 9 C 0.006 3.994 10 C -0.070 4.070 11 N -0.323 5.323 12 C -0.067 4.067 13 C 0.234 3.766 14 O -0.501 6.501 15 N -0.232 5.232 16 C -0.460 4.460 17 H 0.071 0.929 18 C -0.215 4.215 19 N -0.576 5.576 20 Si 0.787 3.213 21 H -0.182 1.182 22 H -0.201 1.201 23 H -0.151 1.151 24 C -0.099 4.099 25 N -0.142 5.142 26 N -0.138 5.138 27 C -0.057 4.057 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.251 0.749 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.137 0.863 43 H 0.227 0.773 44 H 0.088 0.912 45 H 0.236 0.764 46 H 0.112 0.888 47 H 0.121 0.879 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.126 -1.103 -40.330 40.345 hybrid contribution 0.900 -0.824 1.463 1.905 sum 1.026 -1.926 -38.866 38.927 Atomic orbital electron populations 1.21728 0.94106 1.02350 1.02370 1.21330 0.97031 0.94372 1.01704 1.20561 0.84883 0.99536 1.05169 1.21790 0.95316 0.93943 0.86534 1.20009 0.94006 1.26608 0.92874 1.17446 0.85081 0.74987 0.84479 1.90741 1.18089 1.52662 1.84811 1.45436 1.10320 1.75570 1.05060 1.21022 0.96923 1.01759 0.79654 1.22072 0.95791 1.03114 0.85991 1.59879 1.17785 1.51964 1.02702 1.21629 0.93180 1.04515 0.87360 1.21071 0.86224 0.81094 0.88248 1.90557 1.18580 1.55125 1.85839 1.42007 1.08312 1.67779 1.05062 1.19016 0.94385 1.50465 0.82165 0.92877 1.26156 1.05367 0.95989 0.93963 1.69816 1.37665 1.50282 0.99835 0.85332 0.75919 0.79952 0.80085 1.18157 1.20144 1.15122 1.24482 0.97535 0.95964 0.91952 1.77154 0.97098 1.26123 1.13857 1.48667 1.03434 1.54248 1.07497 1.22378 1.02623 1.05364 0.75343 0.90842 0.92065 0.93494 0.90964 0.93782 0.87923 0.89292 0.74865 0.92476 0.92703 0.92191 0.88526 0.83565 0.89911 0.86260 0.77335 0.91165 0.76413 0.88776 0.87944 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.11 -1.41 5.92 30.59 0.18 -1.23 16 3 C -0.06 -0.88 4.67 29.85 0.14 -0.74 16 4 C 0.16 2.66 6.26 42.14 0.26 2.92 16 5 C -0.32 -6.04 6.13 -20.15 -0.12 -6.16 16 6 C 0.59 13.40 7.81 86.66 0.68 14.08 16 7 O -0.58 -17.46 14.84 -4.04 -0.06 -17.52 16 8 N -0.71 -12.27 5.55 -466.37 -2.59 -14.85 16 9 C 0.13 2.77 5.93 86.38 0.51 3.28 16 10 C 0.06 1.07 5.80 86.30 0.50 1.57 16 11 N -0.69 -19.41 6.12 -517.92 -3.17 -22.58 16 12 C 0.07 1.87 6.17 85.56 0.53 2.39 16 13 C 0.45 19.92 7.82 87.66 0.69 20.61 16 14 O -0.62 -34.51 15.78 -3.06 -0.05 -34.56 16 15 N -0.59 -27.52 5.09 -306.99 -1.56 -29.09 16 16 C -0.33 -19.48 10.16 84.04 0.85 -18.63 16 17 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 18 C -0.02 -0.90 5.50 84.92 0.47 -0.44 16 19 N -0.94 -56.64 13.96 21.66 0.30 -56.34 16 20 Si 0.97 38.34 27.74 68.60 1.90 40.24 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 22 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16 24 C 0.09 1.30 11.50 85.65 0.99 2.29 16 25 N -0.32 -5.56 12.50 -56.27 -0.70 -6.26 16 26 N -0.36 -5.09 3.98 -354.30 -1.41 -6.50 16 27 C 0.08 0.40 11.06 127.77 1.41 1.82 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.80 7.71 -2.39 -0.02 0.79 16 34 H 0.09 1.75 6.50 -2.39 -0.02 1.74 16 35 H 0.41 4.12 7.43 -92.71 -0.69 3.43 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.35 10.66 8.43 -89.69 -0.76 9.90 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.39 14.82 5.76 -92.70 -0.53 14.28 16 44 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 45 H 0.22 1.46 7.50 -2.91 -0.02 1.44 16 46 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 48 H 0.11 0.06 7.63 -2.39 -0.02 0.05 16 Total: -1.00 -88.66 403.44 -0.58 -89.24 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -1.04 Total: 37.42 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 7.80 Total: 20.81 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -9.13 Total: -135.62 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.11 Total: -52.08 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Total: -88.66 -0.58 -89.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130775749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.574 kcal (2) G-P(sol) polarization free energy of solvation -88.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds