Wall clock time and date at job start Tue Mar 31 2020 20:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 C 1.52999 * 109.47063 * 119.99982 * 2 1 3 5 5 C 1.50696 * 109.47177 * 175.00082 * 4 2 1 6 6 O 1.21290 * 120.00076 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00284 * 180.27527 * 5 4 2 8 8 C 1.46499 * 120.00069 * 179.72504 * 7 5 4 9 9 C 1.50702 * 109.46691 * 179.97438 * 8 7 5 10 10 N 1.30829 * 125.96509 * 274.99747 * 9 8 7 11 11 C 1.33241 * 109.83227 * 180.02562 * 10 9 8 12 12 C 1.50699 * 125.52649 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.68036 * 15.51921 * 12 11 10 14 14 C 1.53296 * 109.67810 * 254.99903 * 12 11 10 15 15 O 1.42964 * 109.22217 * 187.97529 * 14 12 11 16 16 C 1.42960 * 114.16747 * 62.58046 * 15 14 12 17 17 C 1.53292 * 109.22389 * 297.42330 * 16 15 14 18 18 N 1.47149 * 109.68028 * 136.07551 * 12 11 10 19 19 C 1.36933 * 120.98474 * 350.23415 * 18 12 11 20 20 H 1.08005 * 120.00109 * 31.64550 * 19 18 12 21 21 C 1.38809 * 120.00164 * 211.64366 * 19 18 12 22 22 N 1.31617 * 120.00101 * 10.48289 * 21 19 18 23 23 Si 1.86800 * 119.99948 * 190.48430 * 21 19 18 24 24 H 1.48503 * 109.47440 * 59.99786 * 23 21 19 25 25 H 1.48499 * 109.47071 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47008 * 299.99679 * 23 21 19 27 27 N 1.30714 * 108.94369 * 0.02562 * 11 10 9 28 28 N 1.34427 * 125.95789 * 94.69479 * 9 8 7 29 29 H 0.97001 * 126.82943 * 0.02562 * 28 9 8 30 30 H 1.08997 * 109.47424 * 300.00211 * 1 2 3 31 31 H 1.09003 * 109.47191 * 60.00125 * 1 2 3 32 32 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47626 * 240.00133 * 2 1 3 34 34 H 1.09003 * 109.46909 * 300.00048 * 3 2 1 35 35 H 1.09004 * 109.46685 * 59.99557 * 3 2 1 36 36 H 1.08999 * 109.47062 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47208 * 55.00260 * 4 2 1 38 38 H 1.09001 * 109.47269 * 295.00252 * 4 2 1 39 39 H 0.96996 * 119.99826 * 359.72711 * 7 5 4 40 40 H 1.08996 * 109.47258 * 299.99561 * 8 7 5 41 41 H 1.09000 * 109.47119 * 60.00200 * 8 7 5 42 42 H 1.08996 * 109.51590 * 307.89876 * 14 12 11 43 43 H 1.09000 * 109.51232 * 68.00497 * 14 12 11 44 44 H 1.09007 * 109.51013 * 57.34506 * 16 15 14 45 45 H 1.09003 * 109.51668 * 177.49492 * 16 15 14 46 46 H 1.09002 * 109.68373 * 172.02034 * 17 16 15 47 47 H 1.08996 * 109.68150 * 292.53858 * 17 16 15 48 48 H 0.97006 * 119.99854 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5418 -0.8294 1.1889 6 8 4.1450 -0.3739 0.2403 7 7 4.2144 -1.4366 2.1866 8 6 5.6739 -1.5471 2.1251 9 6 6.1758 -2.2618 3.3532 10 7 6.4361 -1.7101 4.5107 11 6 6.8613 -2.6373 5.3679 12 6 7.2585 -2.3892 6.8003 13 1 6.8947 -1.4122 7.1181 14 6 8.7853 -2.4385 6.9285 15 8 9.1433 -2.3884 8.3117 16 6 8.6671 -3.4960 9.0800 17 6 7.1343 -3.5010 9.0618 18 7 6.6864 -3.4362 7.6616 19 6 5.7643 -4.3237 7.1747 20 1 5.8016 -4.6275 6.1389 21 6 4.7814 -4.8329 8.0123 22 7 4.6040 -4.3153 9.2093 23 14 3.7107 -6.2528 7.4405 24 1 4.5670 -7.4274 7.1366 25 1 2.7461 -6.6081 8.5121 26 1 2.9683 -5.8520 6.2184 27 7 6.8781 -3.7969 4.7649 28 7 6.4287 -3.5783 3.4524 29 1 6.3249 -4.2444 2.7549 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6053 -1.7198 1.2951 38 1 1.7516 -0.1583 2.1370 39 1 3.7321 -1.8006 2.9454 40 1 5.9586 -2.1090 1.2355 41 1 6.1122 -0.5501 2.0808 42 1 9.1580 -3.3638 6.4893 43 1 9.2221 -1.5864 6.4076 44 1 9.0394 -4.4252 8.6485 45 1 9.0188 -3.4044 10.1076 46 1 6.7647 -4.4167 9.5234 47 1 6.7579 -2.6365 9.6086 48 1 3.9173 -4.6715 9.7948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130822711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:33 Heat of formation + Delta-G solvation = 29.427682 kcal Electronic energy + Delta-G solvation = -29668.116210 eV Core-core repulsion = 25567.919828 eV Total energy + Delta-G solvation = -4100.196381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94809 -40.03450 -38.33136 -36.14278 -35.10217 -34.55954 -32.84544 -31.70042 -30.89946 -30.05628 -28.77296 -27.30551 -26.95546 -26.33480 -23.88343 -23.35450 -21.58220 -21.19780 -20.43776 -20.05276 -19.33521 -18.10507 -17.15008 -16.74933 -16.45228 -15.98006 -15.65983 -15.11699 -15.01821 -14.73228 -14.51281 -14.31032 -14.07644 -14.03666 -13.80441 -13.49917 -13.26134 -13.10126 -12.72896 -12.54882 -12.40030 -12.12236 -11.83644 -11.68605 -11.35884 -11.19847 -11.10931 -11.08283 -10.91912 -10.84621 -10.56423 -10.31209 -10.18493 -10.01441 -9.85769 -9.73541 -9.54991 -9.38009 -9.31890 -8.66912 -8.53885 -6.68896 -5.82921 -3.32055 1.68840 2.43597 2.75967 2.94326 3.29484 3.36193 3.36807 3.39929 3.95302 4.38621 4.44935 4.51755 4.56393 4.66567 4.76685 4.98589 5.04444 5.21983 5.25222 5.33890 5.36315 5.38175 5.42338 5.46974 5.57725 5.67741 5.74969 5.77133 5.82973 5.90011 6.03242 6.03694 6.13237 6.19567 6.27219 6.32599 6.49344 6.55419 6.57084 6.79784 7.07342 7.19025 7.26245 7.51545 7.86071 7.89984 7.98331 8.35770 8.42364 9.14762 9.72056 10.30627 11.25772 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.002951 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.100449 B = 9485.302701 C =10841.876125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.139 4.139 5 C 0.519 3.481 6 O -0.538 6.538 7 N -0.727 5.727 8 C 0.208 3.792 9 C 0.241 3.759 10 N -0.514 5.514 11 C 0.255 3.745 12 C 0.225 3.775 13 H 0.065 0.935 14 C 0.062 3.938 15 O -0.389 6.389 16 C 0.033 3.967 17 C 0.148 3.852 18 N -0.586 5.586 19 C -0.256 4.256 20 H 0.089 0.911 21 C 0.006 3.994 22 N -0.905 5.905 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.287 1.287 27 N -0.259 5.259 28 N -0.483 5.483 29 H 0.435 0.565 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.408 0.592 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.032 0.968 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 5.456 -14.899 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.212 4.212 4 C -0.179 4.179 5 C 0.306 3.694 6 O -0.415 6.415 7 N -0.381 5.381 8 C 0.082 3.918 9 C -0.039 4.039 10 N -0.243 5.243 11 C -0.027 4.027 12 C 0.115 3.885 13 H 0.083 0.917 14 C -0.018 4.018 15 O -0.307 6.307 16 C -0.045 4.045 17 C 0.023 3.977 18 N -0.311 5.311 19 C -0.386 4.386 20 H 0.106 0.894 21 C -0.193 4.193 22 N -0.550 5.550 23 Si 0.734 3.266 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.213 1.213 27 N -0.086 5.086 28 N -0.202 5.202 29 H 0.280 0.720 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.243 0.757 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.050 0.950 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.577 5.597 -14.881 15.977 hybrid contribution -1.332 -1.669 -0.418 2.176 sum -2.909 3.928 -15.299 16.061 Atomic orbital electron populations 1.21872 0.94937 1.01777 1.02055 1.20859 0.95090 0.96947 0.96967 1.21974 1.03163 0.94939 1.01093 1.21808 0.91406 1.03337 1.01347 1.20744 0.90322 0.76762 0.81593 1.90678 1.70426 1.47217 1.33170 1.46059 1.06789 1.60483 1.24761 1.19503 0.80829 1.01017 0.90443 1.23930 1.00338 0.83400 0.96192 1.70291 1.20507 1.34041 0.99494 1.24059 0.96473 0.85216 0.96954 1.19519 0.92928 0.94617 0.81403 0.91734 1.22862 0.94534 1.01075 0.83294 1.87817 1.76361 1.46683 1.19833 1.23402 0.98234 0.88308 0.94555 1.21443 0.88357 1.02601 0.85335 1.43962 1.47814 1.32406 1.06967 1.19678 1.04381 1.17165 0.97374 0.89436 1.25187 0.96943 0.99885 0.97266 1.69970 1.34503 1.41714 1.08793 0.86363 0.80117 0.82640 0.77485 1.20932 1.21542 1.21339 1.78391 1.21047 1.21757 0.87451 1.48271 1.51747 1.07967 1.12234 0.72009 0.92516 0.92403 0.92671 0.90469 0.92999 0.93239 0.90651 0.88737 0.88485 0.75671 0.89343 0.87818 0.93324 0.89698 0.93926 0.89917 0.88728 0.94956 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 2 C -0.08 -0.66 2.57 -90.62 -0.23 -0.90 16 3 C -0.15 -1.40 8.93 37.16 0.33 -1.07 16 4 C -0.14 -1.13 5.17 -27.89 -0.14 -1.27 16 5 C 0.52 5.50 7.55 -10.99 -0.08 5.42 16 6 O -0.54 -7.16 13.96 5.55 0.08 -7.09 16 7 N -0.73 -7.54 5.55 -61.47 -0.34 -7.88 16 8 C 0.21 2.24 6.30 -5.19 -0.03 2.21 16 9 C 0.24 3.43 7.60 -155.70 -1.18 2.25 16 10 N -0.51 -9.35 11.19 -8.16 -0.09 -9.44 16 11 C 0.26 5.22 6.15 -156.85 -0.96 4.26 16 12 C 0.22 4.91 3.62 -68.58 -0.25 4.66 16 13 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.06 1.19 6.27 37.31 0.23 1.43 16 15 O -0.39 -7.81 10.74 -35.23 -0.38 -8.19 16 16 C 0.03 0.65 6.98 37.31 0.26 0.91 16 17 C 0.15 3.50 5.37 -3.53 -0.02 3.48 16 18 N -0.59 -14.59 3.03 -165.61 -0.50 -15.09 16 19 C -0.26 -6.88 8.75 -15.06 -0.13 -7.01 16 20 H 0.09 2.33 4.90 -52.48 -0.26 2.07 16 21 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 22 N -0.91 -25.75 11.15 55.49 0.62 -25.13 16 23 Si 0.90 21.60 29.57 -169.99 -5.03 16.57 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 N -0.26 -5.09 10.00 32.42 0.32 -4.77 16 28 N -0.48 -7.03 7.45 32.62 0.24 -6.78 16 29 H 0.44 4.64 8.96 -182.33 -1.63 3.00 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.72 7.96 -51.93 -0.41 0.30 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.84 5.95 -51.93 -0.31 0.53 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.41 4.20 8.46 -40.82 -0.35 3.85 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 43 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.09 2.43 6.36 -51.93 -0.33 2.10 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -33.13 386.51 -9.98 -43.11 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.77 Total: 5.10 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -1.96 Total: 13.77 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: 0.25 Total: -69.10 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.30 Total: -15.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.13 -9.98 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130822711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.537 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds