Wall clock time and date at job start Tue Mar 31 2020 20:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 C 1.52999 * 109.47063 * 119.99982 * 2 1 3 5 5 C 1.50696 * 109.47177 * 175.00082 * 4 2 1 6 6 O 1.21290 * 120.00076 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00284 * 180.27527 * 5 4 2 8 8 C 1.46499 * 120.00069 * 179.72504 * 7 5 4 9 9 C 1.50702 * 109.46691 * 179.97438 * 8 7 5 10 10 N 1.30829 * 125.96509 * 274.99747 * 9 8 7 11 11 C 1.33241 * 109.83227 * 180.02562 * 10 9 8 12 12 C 1.50699 * 125.52649 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.68036 * 15.51921 * 12 11 10 14 14 C 1.53296 * 109.67810 * 254.99903 * 12 11 10 15 15 O 1.42964 * 109.22217 * 187.97529 * 14 12 11 16 16 C 1.42960 * 114.16747 * 62.58046 * 15 14 12 17 17 C 1.53292 * 109.22389 * 297.42330 * 16 15 14 18 18 N 1.47149 * 109.68028 * 136.07551 * 12 11 10 19 19 C 1.36933 * 120.98474 * 350.23415 * 18 12 11 20 20 H 1.08005 * 120.00109 * 31.64550 * 19 18 12 21 21 C 1.38809 * 120.00164 * 211.64366 * 19 18 12 22 22 N 1.31617 * 120.00101 * 10.48289 * 21 19 18 23 23 Si 1.86800 * 119.99948 * 190.48430 * 21 19 18 24 24 H 1.48503 * 109.47440 * 59.99786 * 23 21 19 25 25 H 1.48499 * 109.47071 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47008 * 299.99679 * 23 21 19 27 27 N 1.30714 * 108.94369 * 0.02562 * 11 10 9 28 28 N 1.34427 * 125.95789 * 94.69479 * 9 8 7 29 29 H 0.97001 * 126.82943 * 0.02562 * 28 9 8 30 30 H 1.08997 * 109.47424 * 300.00211 * 1 2 3 31 31 H 1.09003 * 109.47191 * 60.00125 * 1 2 3 32 32 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47626 * 240.00133 * 2 1 3 34 34 H 1.09003 * 109.46909 * 300.00048 * 3 2 1 35 35 H 1.09004 * 109.46685 * 59.99557 * 3 2 1 36 36 H 1.08999 * 109.47062 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47208 * 55.00260 * 4 2 1 38 38 H 1.09001 * 109.47269 * 295.00252 * 4 2 1 39 39 H 0.96996 * 119.99826 * 359.72711 * 7 5 4 40 40 H 1.08996 * 109.47258 * 299.99561 * 8 7 5 41 41 H 1.09000 * 109.47119 * 60.00200 * 8 7 5 42 42 H 1.08996 * 109.51590 * 307.89876 * 14 12 11 43 43 H 1.09000 * 109.51232 * 68.00497 * 14 12 11 44 44 H 1.09007 * 109.51013 * 57.34506 * 16 15 14 45 45 H 1.09003 * 109.51668 * 177.49492 * 16 15 14 46 46 H 1.09002 * 109.68373 * 172.02034 * 17 16 15 47 47 H 1.08996 * 109.68150 * 292.53858 * 17 16 15 48 48 H 0.97006 * 119.99854 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5418 -0.8294 1.1889 6 8 4.1450 -0.3739 0.2403 7 7 4.2144 -1.4366 2.1866 8 6 5.6739 -1.5471 2.1251 9 6 6.1758 -2.2618 3.3532 10 7 6.4361 -1.7101 4.5107 11 6 6.8613 -2.6373 5.3679 12 6 7.2585 -2.3892 6.8003 13 1 6.8947 -1.4122 7.1181 14 6 8.7853 -2.4385 6.9285 15 8 9.1433 -2.3884 8.3117 16 6 8.6671 -3.4960 9.0800 17 6 7.1343 -3.5010 9.0618 18 7 6.6864 -3.4362 7.6616 19 6 5.7643 -4.3237 7.1747 20 1 5.8016 -4.6275 6.1389 21 6 4.7814 -4.8329 8.0123 22 7 4.6040 -4.3153 9.2093 23 14 3.7107 -6.2528 7.4405 24 1 4.5670 -7.4274 7.1366 25 1 2.7461 -6.6081 8.5121 26 1 2.9683 -5.8520 6.2184 27 7 6.8781 -3.7969 4.7649 28 7 6.4287 -3.5783 3.4524 29 1 6.3249 -4.2444 2.7549 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6053 -1.7198 1.2951 38 1 1.7516 -0.1583 2.1370 39 1 3.7321 -1.8006 2.9454 40 1 5.9586 -2.1090 1.2355 41 1 6.1122 -0.5501 2.0808 42 1 9.1580 -3.3638 6.4893 43 1 9.2221 -1.5864 6.4076 44 1 9.0394 -4.4252 8.6485 45 1 9.0188 -3.4044 10.1076 46 1 6.7647 -4.4167 9.5234 47 1 6.7579 -2.6365 9.6086 48 1 3.9173 -4.6715 9.7948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130822711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:32 Heat of formation + Delta-G solvation = 5.714713 kcal Electronic energy + Delta-G solvation = -29669.144481 eV Core-core repulsion = 25567.919828 eV Total energy + Delta-G solvation = -4101.224653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.29713 -40.89556 -39.99247 -36.93220 -36.45691 -35.84899 -34.39368 -33.14041 -32.59330 -31.52461 -29.69785 -28.81786 -27.92767 -27.28345 -25.47500 -25.24922 -22.93038 -22.06922 -21.79950 -21.07051 -20.78765 -19.35213 -18.52171 -18.08918 -17.64590 -17.20051 -16.85281 -16.64794 -16.27513 -16.10660 -15.88787 -15.84228 -15.42873 -15.08894 -14.91975 -14.70693 -14.58016 -14.57499 -14.10629 -13.42968 -13.27272 -13.18347 -13.01118 -12.99516 -12.82734 -12.71987 -12.70374 -12.30099 -12.17469 -12.05989 -11.91044 -11.74361 -11.55823 -11.46866 -11.17434 -11.05854 -11.04911 -10.79844 -10.55738 -10.24481 -10.22214 -8.66343 -7.86811 -5.38647 0.44048 1.38992 1.43222 1.49294 1.56739 1.61789 1.65898 2.34905 2.46379 2.71431 2.98771 3.30193 3.42205 3.62075 3.73100 3.82436 3.93143 4.04422 4.12477 4.21642 4.34205 4.39871 4.47954 4.51857 4.60288 4.61799 4.70059 4.73196 4.77645 4.86898 4.87972 4.95834 5.07285 5.10859 5.18877 5.21091 5.22734 5.26498 5.31250 5.50556 5.53766 5.58661 5.80262 6.14380 6.23254 6.38431 6.39267 7.04009 7.13613 7.15151 7.74179 8.30823 9.19937 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.002951 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.100449 B = 9485.302701 C =10841.876125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.519 3.481 6 O -0.566 6.566 7 N -0.724 5.724 8 C 0.213 3.787 9 C 0.266 3.734 10 N -0.542 5.542 11 C 0.241 3.759 12 C 0.221 3.779 13 H 0.046 0.954 14 C 0.071 3.929 15 O -0.391 6.391 16 C 0.046 3.954 17 C 0.152 3.848 18 N -0.601 5.601 19 C -0.257 4.257 20 H 0.092 0.908 21 C -0.048 4.048 22 N -0.937 5.937 23 Si 0.962 3.038 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.279 1.279 27 N -0.290 5.290 28 N -0.466 5.466 29 H 0.454 0.546 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.410 0.590 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.048 0.952 43 H 0.112 0.888 44 H 0.047 0.953 45 H 0.113 0.887 46 H 0.069 0.931 47 H 0.008 0.992 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 5.087 -16.728 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.308 3.692 6 O -0.445 6.445 7 N -0.378 5.378 8 C 0.087 3.913 9 C -0.014 4.014 10 N -0.272 5.272 11 C -0.042 4.042 12 C 0.112 3.888 13 H 0.063 0.937 14 C -0.008 4.008 15 O -0.309 6.309 16 C -0.032 4.032 17 C 0.026 3.974 18 N -0.327 5.327 19 C -0.387 4.387 20 H 0.109 0.891 21 C -0.243 4.243 22 N -0.583 5.583 23 Si 0.791 3.209 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.206 1.206 27 N -0.119 5.119 28 N -0.187 5.187 29 H 0.302 0.698 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.246 0.754 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.066 0.934 43 H 0.130 0.870 44 H 0.065 0.935 45 H 0.131 0.869 46 H 0.088 0.912 47 H 0.026 0.974 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.831 5.215 -16.748 17.636 hybrid contribution -1.236 -1.474 0.033 1.925 sum -3.067 3.741 -16.714 17.400 Atomic orbital electron populations 1.21836 0.93500 1.02448 1.02456 1.20846 0.96202 0.96158 0.96599 1.21945 1.01606 0.95849 1.01641 1.21869 0.89469 1.04620 1.01644 1.21163 0.91246 0.75890 0.80907 1.90676 1.71164 1.48387 1.34273 1.46035 1.06478 1.60441 1.24848 1.19639 0.81190 1.00993 0.89481 1.24397 0.97951 0.83081 0.95935 1.70258 1.21858 1.34442 1.00601 1.23751 0.97657 0.86071 0.96707 1.19544 0.94386 0.92709 0.82168 0.93654 1.22862 0.92702 1.02210 0.83066 1.87819 1.76024 1.46783 1.20311 1.23281 0.95023 0.88544 0.96343 1.21294 0.91118 1.00194 0.84756 1.44184 1.47899 1.33069 1.07571 1.20003 1.04225 1.16941 0.97568 0.89056 1.25894 0.98479 1.02358 0.97570 1.70134 1.35220 1.43140 1.09818 0.85428 0.78490 0.79982 0.77000 1.20540 1.21951 1.20552 1.78215 1.22203 1.21913 0.89569 1.48098 1.50660 1.08705 1.11214 0.69757 0.92085 0.92073 0.91867 0.91602 0.92487 0.92701 0.92953 0.86811 0.87444 0.75442 0.86652 0.87850 0.93359 0.87047 0.93505 0.86890 0.91223 0.97407 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.08 -1.19 2.57 -10.79 -0.03 -1.21 16 3 C -0.15 -2.63 8.93 71.98 0.64 -1.98 16 4 C -0.14 -1.92 5.17 29.85 0.15 -1.77 16 5 C 0.52 10.11 7.55 87.66 0.66 10.77 16 6 O -0.57 -14.39 13.96 -3.06 -0.04 -14.43 16 7 N -0.72 -13.51 5.55 -466.78 -2.59 -16.10 16 8 C 0.21 4.10 6.30 85.63 0.54 4.64 16 9 C 0.27 7.08 7.60 138.23 1.05 8.13 16 10 N -0.54 -19.22 11.19 -179.73 -2.01 -21.23 16 11 C 0.24 9.73 6.15 138.63 0.85 10.58 16 12 C 0.22 9.69 3.62 44.22 0.16 9.85 16 13 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 14 C 0.07 2.66 6.27 72.08 0.45 3.11 16 15 O -0.39 -15.26 10.74 -148.98 -1.60 -16.86 16 16 C 0.05 1.77 6.98 72.08 0.50 2.27 16 17 C 0.15 7.34 5.37 86.35 0.46 7.80 16 18 N -0.60 -30.40 3.03 -677.88 -2.05 -32.45 16 19 C -0.26 -13.91 8.75 84.03 0.74 -13.17 16 20 H 0.09 4.84 4.90 -2.91 -0.01 4.82 16 21 C -0.05 -2.64 5.06 84.86 0.43 -2.21 16 22 N -0.94 -54.68 11.15 21.65 0.24 -54.43 16 23 Si 0.96 44.54 29.57 68.60 2.03 46.57 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 27 N -0.29 -11.11 10.00 -51.33 -0.51 -11.62 16 28 N -0.47 -12.60 7.45 -50.71 -0.38 -12.97 16 29 H 0.45 8.44 8.96 -213.09 -1.91 6.53 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 1.14 7.96 -2.39 -0.02 1.12 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 1.15 5.95 -2.39 -0.01 1.14 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.41 7.57 8.46 -92.71 -0.78 6.78 16 40 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.82 8.13 -2.39 -0.02 1.81 16 43 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 44 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 46 H 0.07 3.70 6.36 -2.39 -0.02 3.68 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -72.44 386.51 -1.34 -73.78 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -1.70 Total: 23.93 kcal Atomic # 6 Polarization: 28.54 SS G_CDS: 7.28 Total: 35.82 kcal Atomic # 7 Polarization: -141.50 SS G_CDS: -7.30 Total: -148.81 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.64 Total: -31.29 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.44 -1.34 -73.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130822711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.492 kcal (2) G-P(sol) polarization free energy of solvation -72.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds