Wall clock time and date at job start Tue Mar 31 2020 20:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47466 * 2 1 4 4 H 1.09005 * 109.47085 * 304.99981 * 3 2 1 5 5 C 1.53005 * 109.47435 * 64.99643 * 3 2 1 6 6 C 1.50699 * 109.47714 * 184.99880 * 3 2 1 7 7 O 1.21279 * 119.99621 * 359.97438 * 6 3 2 8 8 N 1.34777 * 120.00407 * 179.97438 * 6 3 2 9 9 C 1.46497 * 119.99787 * 179.97438 * 8 6 3 10 10 C 1.50709 * 109.46825 * 179.97438 * 9 8 6 11 11 N 1.30832 * 125.96313 * 275.00131 * 10 9 8 12 12 C 1.33236 * 109.82729 * 180.02562 * 11 10 9 13 13 C 1.50699 * 125.52730 * 180.02562 * 12 11 10 14 14 H 1.09009 * 109.70632 * 15.53877 * 13 12 11 15 15 C 1.53297 * 109.68368 * 255.00093 * 13 12 11 16 16 O 1.42958 * 109.26251 * 187.99645 * 15 13 12 17 17 C 1.42957 * 114.16694 * 62.55724 * 16 15 13 18 18 C 1.53291 * 109.22565 * 297.41430 * 17 16 15 19 19 N 1.47161 * 108.38246 * 52.29968 * 18 17 16 20 20 C 1.36940 * 120.97886 * 129.47641 * 19 18 17 21 21 H 1.08001 * 119.99810 * 211.47596 * 20 19 18 22 22 C 1.38806 * 120.00194 * 31.47907 * 20 19 18 23 23 N 1.31622 * 119.99877 * 10.56513 * 22 20 19 24 24 Si 1.86797 * 120.00177 * 190.56677 * 22 20 19 25 25 H 1.48499 * 109.47350 * 89.99933 * 24 22 20 26 26 H 1.48499 * 109.47171 * 210.00272 * 24 22 20 27 27 H 1.48502 * 109.47075 * 329.99538 * 24 22 20 28 28 N 1.30715 * 108.94982 * 0.26408 * 12 11 10 29 29 N 1.34424 * 125.95668 * 95.02720 * 10 9 8 30 30 H 0.96997 * 126.82896 * 359.97438 * 29 10 9 31 31 H 1.09003 * 109.47207 * 60.00399 * 1 2 3 32 32 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47182 * 300.00002 * 1 2 3 34 34 H 1.09003 * 109.47665 * 239.99498 * 2 1 3 35 35 H 1.09009 * 109.46952 * 120.00257 * 2 1 3 36 36 H 1.09005 * 109.46708 * 60.00107 * 5 3 2 37 37 H 1.08993 * 109.47366 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.46740 * 300.00790 * 5 3 2 39 39 H 0.96993 * 119.99839 * 0.02562 * 8 6 3 40 40 H 1.08999 * 109.47223 * 60.00086 * 9 8 6 41 41 H 1.08999 * 109.47670 * 299.99570 * 9 8 6 42 42 H 1.09003 * 109.50976 * 68.04622 * 15 13 12 43 43 H 1.08998 * 109.51198 * 307.94686 * 15 13 12 44 44 H 1.08995 * 109.51345 * 57.34493 * 17 16 15 45 45 H 1.09006 * 109.51197 * 177.48973 * 17 16 15 46 46 H 1.08997 * 109.68969 * 172.02532 * 18 17 16 47 47 H 1.08998 * 109.68340 * 292.54908 * 18 17 16 48 48 H 0.97000 * 119.99981 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3951 -0.2037 8 7 4.2149 2.6118 -0.1458 9 6 5.6750 2.6134 -0.2656 10 6 6.1772 4.0343 -0.2669 11 7 6.2603 4.8189 -1.3106 12 6 6.7479 6.0043 -0.9472 13 6 6.9888 7.1720 -1.8689 14 1 6.4606 7.0132 -2.8092 15 6 8.4910 7.3157 -2.1384 16 8 8.7273 8.5288 -2.8570 17 6 8.3600 9.7123 -2.1442 18 6 6.8508 9.6921 -1.8761 19 7 6.5103 8.4114 -1.2360 20 6 5.7701 8.3738 -0.0845 21 1 5.9318 7.5855 0.6358 22 6 4.8120 9.3487 0.1568 23 7 4.4668 10.1835 -0.8005 24 14 4.0124 9.4760 1.8402 25 1 4.8046 10.3950 2.6964 26 1 2.6317 10.0026 1.6939 27 1 3.9652 8.1313 2.4687 28 7 6.9881 5.9887 0.3376 29 7 6.6185 4.7166 0.8040 30 1 6.6742 4.3933 1.7168 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.0699 1.5875 2.1492 37 1 1.9990 3.1540 1.3075 38 1 0.5489 2.1252 1.3968 39 1 3.7326 3.4508 -0.0815 40 1 5.9637 2.1255 -1.1965 41 1 6.1093 2.0750 0.5768 42 1 8.8374 6.4685 -2.7304 43 1 9.0299 7.3427 -1.1913 44 1 8.8977 9.7484 -1.1968 45 1 8.6121 10.5894 -2.7403 46 1 6.5844 10.5157 -1.2138 47 1 6.3094 9.7880 -2.8172 48 1 3.7970 10.8646 -0.6319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130835950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:14 Heat of formation + Delta-G solvation = 29.005781 kcal Electronic energy + Delta-G solvation = -29857.104756 eV Core-core repulsion = 25756.890080 eV Total energy + Delta-G solvation = -4100.214676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.94996 -40.10682 -38.33137 -35.87566 -35.23697 -34.58001 -32.84496 -31.70328 -30.93313 -30.25333 -29.60385 -27.06403 -26.91834 -25.37359 -23.88517 -23.35673 -22.09555 -21.39582 -20.43305 -20.01866 -19.33029 -18.09218 -17.18274 -16.75174 -16.47822 -15.84233 -15.75416 -15.12975 -14.88481 -14.74179 -14.57186 -14.46153 -14.23831 -13.86085 -13.69368 -13.43614 -13.29900 -13.20536 -12.76012 -12.72870 -12.41802 -11.97839 -11.87307 -11.82144 -11.67546 -11.19952 -11.09622 -11.07696 -10.95337 -10.87064 -10.56359 -10.28598 -10.18791 -10.02087 -9.85936 -9.73564 -9.55158 -9.38012 -9.33475 -8.67158 -8.53953 -6.69380 -5.82970 -3.32029 1.68745 2.43337 2.75484 2.93947 3.29789 3.35438 3.37451 3.39087 3.95120 4.38450 4.38981 4.48795 4.53151 4.62886 4.76841 4.98262 5.03270 5.10106 5.20151 5.22010 5.28379 5.36373 5.40516 5.54867 5.57578 5.60677 5.67773 5.77022 5.80550 5.82842 5.96663 6.03560 6.04596 6.11507 6.19544 6.32564 6.49221 6.55361 6.56971 6.79766 7.07414 7.18822 7.26036 7.51619 7.86096 7.90061 7.96852 8.35580 8.42305 9.14709 9.71965 10.30323 11.25711 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003159 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.349233 B = 8861.139607 C =10334.369171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.111 4.111 4 H 0.101 0.899 5 C -0.148 4.148 6 C 0.523 3.477 7 O -0.541 6.541 8 N -0.725 5.725 9 C 0.208 3.792 10 C 0.241 3.759 11 N -0.514 5.514 12 C 0.255 3.745 13 C 0.225 3.775 14 H 0.065 0.935 15 C 0.062 3.938 16 O -0.388 6.388 17 C 0.033 3.967 18 C 0.148 3.852 19 N -0.586 5.586 20 C -0.255 4.255 21 H 0.089 0.911 22 C 0.005 3.995 23 N -0.905 5.905 24 Si 0.904 3.096 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.283 1.283 28 N -0.259 5.259 29 N -0.483 5.483 30 H 0.435 0.565 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.408 0.592 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.032 0.968 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 -15.168 2.821 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.133 4.133 4 H 0.119 0.881 5 C -0.205 4.205 6 C 0.309 3.691 7 O -0.417 6.417 8 N -0.379 5.379 9 C 0.082 3.918 10 C -0.038 4.038 11 N -0.243 5.243 12 C -0.027 4.027 13 C 0.115 3.885 14 H 0.083 0.917 15 C -0.018 4.018 16 O -0.307 6.307 17 C -0.045 4.045 18 C 0.023 3.977 19 N -0.312 5.312 20 C -0.385 4.385 21 H 0.106 0.894 22 C -0.193 4.193 23 N -0.550 5.550 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.209 1.209 28 N -0.087 5.087 29 N -0.202 5.202 30 H 0.280 0.720 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.244 0.756 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.050 0.950 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.458 -15.224 2.587 15.512 hybrid contribution -0.971 0.367 1.844 2.115 sum -2.429 -14.858 4.431 15.693 Atomic orbital electron populations 1.21852 0.95432 1.01889 1.02036 1.21337 0.95408 0.93988 1.03472 1.21375 0.91300 0.99640 1.00950 0.88108 1.21853 1.02652 1.00391 0.95634 1.20714 0.90121 0.83005 0.75234 1.90701 1.70329 1.31284 1.49421 1.46022 1.06747 1.09704 1.75388 1.19513 0.80650 0.86929 1.04740 1.23922 0.99531 0.96137 0.84258 1.70292 1.21971 1.02849 1.29205 1.24050 0.95542 0.92971 0.90125 1.19516 0.94369 0.82600 0.91971 0.91725 1.22861 0.95191 0.87277 0.96438 1.87817 1.84951 1.14223 1.43694 1.23400 0.99027 0.86492 0.95588 1.21446 0.89040 0.89547 0.97705 1.43979 1.61444 0.98104 1.27656 1.19728 1.11523 1.12578 0.94672 0.89382 1.25183 0.96749 0.99986 0.97406 1.69982 1.33320 1.20973 1.30695 0.86275 0.78565 0.77641 0.84089 1.21330 1.21724 1.20879 1.78388 1.22908 0.94507 1.12852 1.48264 1.50179 1.10758 1.10972 0.72011 0.92574 0.92473 0.92398 0.91048 0.91351 0.92042 0.91986 0.90958 0.75649 0.87783 0.89336 0.89705 0.93323 0.93928 0.89918 0.88701 0.94955 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.67 37.16 0.36 -0.67 16 2 C -0.10 -0.87 4.75 -26.74 -0.13 -1.00 16 3 C -0.11 -0.96 2.72 -91.77 -0.25 -1.21 16 4 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.15 -1.11 8.85 37.16 0.33 -0.78 16 6 C 0.52 5.82 7.15 -10.99 -0.08 5.74 16 7 O -0.54 -7.64 15.92 5.56 0.09 -7.55 16 8 N -0.72 -7.75 5.44 -61.47 -0.33 -8.09 16 9 C 0.21 2.29 6.30 -5.19 -0.03 2.25 16 10 C 0.24 3.46 7.61 -155.69 -1.18 2.28 16 11 N -0.51 -9.38 11.19 -8.16 -0.09 -9.47 16 12 C 0.26 5.23 6.14 -156.86 -0.96 4.27 16 13 C 0.22 4.91 3.62 -68.57 -0.25 4.66 16 14 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 15 C 0.06 1.19 6.27 37.31 0.23 1.43 16 16 O -0.39 -7.81 10.74 -35.23 -0.38 -8.19 16 17 C 0.03 0.65 6.98 37.31 0.26 0.91 16 18 C 0.15 3.50 5.38 -3.53 -0.02 3.48 16 19 N -0.59 -14.59 3.03 -165.60 -0.50 -15.10 16 20 C -0.26 -6.85 8.76 -15.06 -0.13 -6.98 16 21 H 0.09 2.35 4.91 -52.49 -0.26 2.09 16 22 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 23 N -0.91 -25.73 11.15 55.49 0.62 -25.11 16 24 Si 0.90 21.60 29.57 -169.99 -5.03 16.57 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 N -0.26 -5.10 10.02 32.42 0.33 -4.78 16 29 N -0.48 -7.06 7.45 32.62 0.24 -6.82 16 30 H 0.44 4.69 8.96 -182.33 -1.63 3.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 34 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 35 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 38 H 0.07 0.46 6.56 -51.93 -0.34 0.12 16 39 H 0.41 4.34 7.88 -40.82 -0.32 4.02 16 40 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.09 2.44 6.35 -51.93 -0.33 2.11 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -33.32 385.98 -9.84 -43.17 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.66 Total: 5.11 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -1.94 Total: 14.43 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: 0.26 Total: -69.36 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.29 Total: -15.74 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.32 -9.84 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130835950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.173 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds