Wall clock time and date at job start Tue Mar 31 2020 20:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47466 * 2 1 4 4 H 1.09005 * 109.47085 * 304.99981 * 3 2 1 5 5 C 1.53005 * 109.47435 * 64.99643 * 3 2 1 6 6 C 1.50699 * 109.47714 * 184.99880 * 3 2 1 7 7 O 1.21279 * 119.99621 * 359.97438 * 6 3 2 8 8 N 1.34777 * 120.00407 * 179.97438 * 6 3 2 9 9 C 1.46497 * 119.99787 * 179.97438 * 8 6 3 10 10 C 1.50709 * 109.46825 * 179.97438 * 9 8 6 11 11 N 1.30832 * 125.96313 * 275.00131 * 10 9 8 12 12 C 1.33236 * 109.82729 * 180.02562 * 11 10 9 13 13 C 1.50699 * 125.52730 * 180.02562 * 12 11 10 14 14 H 1.09009 * 109.70632 * 15.53877 * 13 12 11 15 15 C 1.53297 * 109.68368 * 255.00093 * 13 12 11 16 16 O 1.42958 * 109.26251 * 187.99645 * 15 13 12 17 17 C 1.42957 * 114.16694 * 62.55724 * 16 15 13 18 18 C 1.53291 * 109.22565 * 297.41430 * 17 16 15 19 19 N 1.47161 * 108.38246 * 52.29968 * 18 17 16 20 20 C 1.36940 * 120.97886 * 129.47641 * 19 18 17 21 21 H 1.08001 * 119.99810 * 211.47596 * 20 19 18 22 22 C 1.38806 * 120.00194 * 31.47907 * 20 19 18 23 23 N 1.31622 * 119.99877 * 10.56513 * 22 20 19 24 24 Si 1.86797 * 120.00177 * 190.56677 * 22 20 19 25 25 H 1.48499 * 109.47350 * 89.99933 * 24 22 20 26 26 H 1.48499 * 109.47171 * 210.00272 * 24 22 20 27 27 H 1.48502 * 109.47075 * 329.99538 * 24 22 20 28 28 N 1.30715 * 108.94982 * 0.26408 * 12 11 10 29 29 N 1.34424 * 125.95668 * 95.02720 * 10 9 8 30 30 H 0.96997 * 126.82896 * 359.97438 * 29 10 9 31 31 H 1.09003 * 109.47207 * 60.00399 * 1 2 3 32 32 H 1.09000 * 109.47204 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47182 * 300.00002 * 1 2 3 34 34 H 1.09003 * 109.47665 * 239.99498 * 2 1 3 35 35 H 1.09009 * 109.46952 * 120.00257 * 2 1 3 36 36 H 1.09005 * 109.46708 * 60.00107 * 5 3 2 37 37 H 1.08993 * 109.47366 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.46740 * 300.00790 * 5 3 2 39 39 H 0.96993 * 119.99839 * 0.02562 * 8 6 3 40 40 H 1.08999 * 109.47223 * 60.00086 * 9 8 6 41 41 H 1.08999 * 109.47670 * 299.99570 * 9 8 6 42 42 H 1.09003 * 109.50976 * 68.04622 * 15 13 12 43 43 H 1.08998 * 109.51198 * 307.94686 * 15 13 12 44 44 H 1.08995 * 109.51345 * 57.34493 * 17 16 15 45 45 H 1.09006 * 109.51197 * 177.48973 * 17 16 15 46 46 H 1.08997 * 109.68969 * 172.02532 * 18 17 16 47 47 H 1.08998 * 109.68340 * 292.54908 * 18 17 16 48 48 H 0.97000 * 119.99981 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3951 -0.2037 8 7 4.2149 2.6118 -0.1458 9 6 5.6750 2.6134 -0.2656 10 6 6.1772 4.0343 -0.2669 11 7 6.2603 4.8189 -1.3106 12 6 6.7479 6.0043 -0.9472 13 6 6.9888 7.1720 -1.8689 14 1 6.4606 7.0132 -2.8092 15 6 8.4910 7.3157 -2.1384 16 8 8.7273 8.5288 -2.8570 17 6 8.3600 9.7123 -2.1442 18 6 6.8508 9.6921 -1.8761 19 7 6.5103 8.4114 -1.2360 20 6 5.7701 8.3738 -0.0845 21 1 5.9318 7.5855 0.6358 22 6 4.8120 9.3487 0.1568 23 7 4.4668 10.1835 -0.8005 24 14 4.0124 9.4760 1.8402 25 1 4.8046 10.3950 2.6964 26 1 2.6317 10.0026 1.6939 27 1 3.9652 8.1313 2.4687 28 7 6.9881 5.9887 0.3376 29 7 6.6185 4.7166 0.8040 30 1 6.6742 4.3933 1.7168 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.0699 1.5875 2.1492 37 1 1.9990 3.1540 1.3075 38 1 0.5489 2.1252 1.3968 39 1 3.7326 3.4508 -0.0815 40 1 5.9637 2.1255 -1.1965 41 1 6.1093 2.0750 0.5768 42 1 8.8374 6.4685 -2.7304 43 1 9.0299 7.3427 -1.1913 44 1 8.8977 9.7484 -1.1968 45 1 8.6121 10.5894 -2.7403 46 1 6.5844 10.5157 -1.2138 47 1 6.3094 9.7880 -2.8172 48 1 3.7970 10.8646 -0.6319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130835950.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:14 Heat of formation + Delta-G solvation = 5.118627 kcal Electronic energy + Delta-G solvation = -29858.140581 eV Core-core repulsion = 25756.890080 eV Total energy + Delta-G solvation = -4101.250501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.30674 -41.00794 -39.99438 -36.74390 -36.41113 -36.03744 -34.39971 -33.14395 -32.59356 -31.56740 -30.56190 -28.82172 -28.04765 -26.05014 -25.47881 -25.25163 -23.08616 -22.59173 -21.81972 -21.08141 -20.82065 -19.33890 -18.53221 -18.13432 -17.67569 -17.22760 -16.85450 -16.60397 -16.27334 -16.16103 -15.90407 -15.65300 -15.48504 -15.35620 -15.04424 -14.58366 -14.52365 -14.37185 -14.23841 -13.55593 -13.42213 -13.17952 -12.99772 -12.98583 -12.83330 -12.74917 -12.56568 -12.52240 -12.29407 -12.14017 -11.91408 -11.72205 -11.58523 -11.47522 -11.18675 -11.07390 -11.06132 -10.81997 -10.56216 -10.28506 -10.24935 -8.66857 -7.86864 -5.38621 0.42904 1.39511 1.42373 1.49385 1.54577 1.56811 1.64747 2.30958 2.46030 2.70061 2.98519 3.30120 3.41410 3.59826 3.65363 3.79602 3.87207 3.98097 4.12051 4.21427 4.34206 4.38886 4.47435 4.48246 4.53633 4.60227 4.61682 4.62959 4.71940 4.87822 4.95406 4.95609 5.01774 5.10569 5.14310 5.18800 5.21708 5.23866 5.25976 5.36746 5.50789 5.58719 5.80225 6.13203 6.23206 6.34110 6.38533 7.03316 7.08483 7.13413 7.74041 8.30482 9.19982 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003159 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.349233 B = 8861.139607 C =10334.369171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.108 4.108 4 H 0.111 0.889 5 C -0.145 4.145 6 C 0.524 3.476 7 O -0.572 6.572 8 N -0.721 5.721 9 C 0.212 3.788 10 C 0.265 3.735 11 N -0.541 5.541 12 C 0.241 3.759 13 C 0.221 3.779 14 H 0.046 0.954 15 C 0.071 3.929 16 O -0.391 6.391 17 C 0.046 3.954 18 C 0.152 3.848 19 N -0.602 5.602 20 C -0.256 4.256 21 H 0.092 0.908 22 C -0.048 4.048 23 N -0.937 5.937 24 Si 0.963 3.037 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.274 1.274 28 N -0.289 5.289 29 N -0.465 5.465 30 H 0.454 0.546 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.410 0.590 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.008 0.992 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -16.616 3.982 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 C -0.129 4.129 4 H 0.129 0.871 5 C -0.202 4.202 6 C 0.312 3.688 7 O -0.451 6.451 8 N -0.374 5.374 9 C 0.086 3.914 10 C -0.014 4.014 11 N -0.271 5.271 12 C -0.042 4.042 13 C 0.112 3.888 14 H 0.064 0.936 15 C -0.008 4.008 16 O -0.309 6.309 17 C -0.032 4.032 18 C 0.026 3.974 19 N -0.328 5.328 20 C -0.386 4.386 21 H 0.109 0.891 22 C -0.243 4.243 23 N -0.583 5.583 24 Si 0.791 3.209 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.199 1.199 28 N -0.118 5.118 29 N -0.186 5.186 30 H 0.302 0.698 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.246 0.754 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.131 0.869 46 H 0.088 0.912 47 H 0.026 0.974 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.419 -16.696 3.774 17.176 hybrid contribution -0.968 0.688 1.466 1.886 sum -2.387 -16.008 5.240 17.012 Atomic orbital electron populations 1.21830 0.93922 1.02463 1.02626 1.21307 0.96658 0.93604 1.02430 1.21420 0.89382 1.00077 1.02046 0.87111 1.21847 1.03572 1.00009 0.94769 1.21141 0.91055 0.82368 0.74253 1.90691 1.71121 1.32294 1.50969 1.45995 1.06558 1.09807 1.75090 1.19662 0.81021 0.84658 1.06056 1.24364 0.97292 0.96587 0.83143 1.70259 1.23174 1.02730 1.30923 1.23747 0.96747 0.93332 0.90324 1.19544 0.95652 0.82181 0.91416 0.93630 1.22862 0.93282 0.87789 0.96914 1.87818 1.84607 1.14504 1.43993 1.23279 0.95793 0.87595 0.96537 1.21295 0.91628 0.88690 0.95739 1.44199 1.61526 0.99485 1.27542 1.20037 1.11050 1.12114 0.95399 0.89055 1.25884 0.97745 1.00226 1.00455 1.70141 1.34100 1.21706 1.32356 0.85344 0.77272 0.77779 0.80457 1.21221 1.22132 1.19878 1.78217 1.23979 0.97006 1.12647 1.48093 1.49192 1.09308 1.12037 0.69773 0.92225 0.91991 0.91514 0.92473 0.92060 0.92122 0.92126 0.89565 0.75430 0.87723 0.86612 0.87056 0.93348 0.93504 0.86896 0.91203 0.97398 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.67 71.98 0.70 -1.03 16 2 C -0.10 -1.59 4.75 30.59 0.15 -1.44 16 3 C -0.11 -1.67 2.72 -11.54 -0.03 -1.71 16 4 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 5 C -0.14 -1.86 8.85 71.98 0.64 -1.22 16 6 C 0.52 10.85 7.15 87.66 0.63 11.47 16 7 O -0.57 -15.47 15.92 -3.03 -0.05 -15.52 16 8 N -0.72 -14.05 5.44 -466.79 -2.54 -16.59 16 9 C 0.21 4.18 6.30 85.64 0.54 4.72 16 10 C 0.27 7.13 7.61 138.23 1.05 8.18 16 11 N -0.54 -19.23 11.19 -179.72 -2.01 -21.24 16 12 C 0.24 9.75 6.14 138.63 0.85 10.60 16 13 C 0.22 9.69 3.62 44.22 0.16 9.85 16 14 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 15 C 0.07 2.65 6.27 72.08 0.45 3.11 16 16 O -0.39 -15.24 10.74 -148.98 -1.60 -16.84 16 17 C 0.05 1.76 6.98 72.08 0.50 2.27 16 18 C 0.15 7.34 5.38 86.35 0.46 7.80 16 19 N -0.60 -30.37 3.03 -677.83 -2.06 -32.43 16 20 C -0.26 -13.82 8.76 84.03 0.74 -13.08 16 21 H 0.09 4.84 4.91 -2.91 -0.01 4.83 16 22 C -0.05 -2.65 5.06 84.86 0.43 -2.22 16 23 N -0.94 -54.60 11.15 21.65 0.24 -54.36 16 24 Si 0.96 44.56 29.57 68.60 2.03 46.59 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 N -0.29 -11.10 10.02 -51.34 -0.51 -11.61 16 29 N -0.47 -12.66 7.45 -50.70 -0.38 -13.04 16 30 H 0.45 8.55 8.96 -213.10 -1.91 6.64 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.65 6.56 -2.39 -0.02 0.63 16 34 H 0.06 1.04 7.96 -2.39 -0.02 1.03 16 35 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.06 0.80 7.56 -2.39 -0.02 0.79 16 38 H 0.09 0.88 6.56 -2.39 -0.02 0.87 16 39 H 0.41 7.94 7.88 -92.71 -0.73 7.21 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 43 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 46 H 0.07 3.71 6.35 -2.39 -0.02 3.69 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -72.53 385.98 -1.26 -73.79 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -1.64 Total: 23.96 kcal Atomic # 6 Polarization: 30.03 SS G_CDS: 7.26 Total: 37.29 kcal Atomic # 7 Polarization: -142.01 SS G_CDS: -7.26 Total: -149.27 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.65 Total: -32.36 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.53 -1.26 -73.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130835950.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.906 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds