Wall clock time and date at job start Tue Mar 31 2020 20:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47355 * 2 1 4 4 C 1.53001 * 109.47065 * 239.99647 * 2 1 3 5 5 C 1.50700 * 109.47115 * 119.99839 * 2 1 3 6 6 O 1.21287 * 119.99659 * 359.97438 * 5 2 1 7 7 N 1.34773 * 120.00210 * 179.97438 * 5 2 1 8 8 C 1.46506 * 120.00192 * 179.97438 * 7 5 2 9 9 C 1.50699 * 109.47090 * 180.02562 * 8 7 5 10 10 N 1.30828 * 125.95805 * 275.30302 * 9 8 7 11 11 C 1.33247 * 109.82801 * 180.12696 * 10 9 8 12 12 C 1.50699 * 125.52929 * 179.85815 * 11 10 9 13 13 H 1.08996 * 109.70736 * 15.25104 * 12 11 10 14 14 C 1.53293 * 109.67945 * 254.71667 * 12 11 10 15 15 O 1.42961 * 109.26436 * 187.99751 * 14 12 11 16 16 C 1.42971 * 114.16423 * 62.55337 * 15 14 12 17 17 C 1.53294 * 109.22364 * 297.41841 * 16 15 14 18 18 N 1.47149 * 108.38231 * 52.30132 * 17 16 15 19 19 C 1.36941 * 120.97907 * 129.47599 * 18 17 16 20 20 H 1.08002 * 120.00070 * 308.82483 * 19 18 17 21 21 C 1.38811 * 119.99938 * 128.83266 * 19 18 17 22 22 N 1.31620 * 120.00461 * 158.89581 * 21 19 18 23 23 Si 1.86798 * 119.99842 * 338.88912 * 21 19 18 24 24 H 1.48501 * 109.47240 * 94.59981 * 23 21 19 25 25 H 1.48508 * 109.47096 * 214.59731 * 23 21 19 26 26 H 1.48500 * 109.47463 * 334.59659 * 23 21 19 27 27 N 1.30719 * 108.94527 * 359.58812 * 11 10 9 28 28 N 1.34428 * 125.96311 * 94.97643 * 9 8 7 29 29 H 0.97003 * 126.81789 * 0.02562 * 28 9 8 30 30 H 1.09004 * 109.46802 * 300.00064 * 1 2 3 31 31 H 1.09000 * 109.47019 * 59.99716 * 1 2 3 32 32 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47168 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46615 * 299.99893 * 3 2 1 35 35 H 1.09001 * 109.47294 * 59.99433 * 3 2 1 36 36 H 1.09005 * 109.46877 * 299.99970 * 4 2 1 37 37 H 1.08997 * 109.46878 * 59.99950 * 4 2 1 38 38 H 1.08998 * 109.47039 * 180.02562 * 4 2 1 39 39 H 0.96995 * 120.00096 * 0.02562 * 7 5 2 40 40 H 1.08995 * 109.46613 * 59.99915 * 8 7 5 41 41 H 1.09001 * 109.46813 * 300.00434 * 8 7 5 42 42 H 1.08998 * 109.51794 * 68.04942 * 14 12 11 43 43 H 1.08995 * 109.51446 * 307.94543 * 14 12 11 44 44 H 1.08993 * 109.51231 * 57.34799 * 16 15 14 45 45 H 1.08999 * 109.50810 * 177.49348 * 16 15 14 46 46 H 1.08994 * 109.67753 * 172.02552 * 17 16 15 47 47 H 1.08997 * 109.67995 * 292.54616 * 17 16 15 48 48 H 0.96995 * 120.00711 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0291 7 7 3.3574 -0.8340 1.4435 8 6 3.8457 -1.5241 2.6401 9 6 5.3527 -1.5242 2.6400 10 7 6.1208 -2.3888 2.0284 11 6 7.4009 -2.0883 2.2444 12 6 8.5828 -2.8538 1.7077 13 1 8.2575 -3.5183 0.9073 14 6 9.2202 -3.6755 2.8339 15 8 10.4433 -4.2487 2.3655 16 6 11.4355 -3.2884 1.9948 17 6 10.9120 -2.4477 0.8247 18 7 9.5907 -1.9139 1.1914 19 6 9.3068 -0.5810 1.0568 20 1 9.9725 0.1581 1.4776 21 6 8.1634 -0.1798 0.3797 22 7 7.6609 1.0185 0.5890 23 14 7.3379 -1.3407 -0.8287 24 1 6.2512 -2.0819 -0.1396 25 1 6.7668 -0.5589 -1.9548 26 1 8.3392 -2.3040 -1.3526 27 7 7.4652 -1.0183 2.9926 28 7 6.1423 -0.6324 3.2633 29 1 5.8552 0.1269 3.7943 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6766 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 3.9877 -0.4654 0.8051 40 1 3.4819 -2.5515 2.6407 41 1 3.4828 -1.0096 3.5298 42 1 8.5380 -4.4701 3.1360 43 1 9.4248 -3.0277 3.6863 44 1 11.6482 -2.6385 2.8435 45 1 12.3469 -3.8046 1.6932 46 1 11.5988 -1.6246 0.6280 47 1 10.8225 -3.0717 -0.0645 48 1 6.8621 1.2990 0.1156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130863739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:44 Heat of formation + Delta-G solvation = 12.562915 kcal Electronic energy + Delta-G solvation = -31238.192315 eV Core-core repulsion = 27137.264622 eV Total energy + Delta-G solvation = -4100.927693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.14775 -41.22493 -40.08024 -36.83411 -36.61092 -36.06902 -34.02320 -33.57709 -32.68957 -31.40051 -28.97382 -28.49475 -28.32572 -27.73670 -25.64493 -24.90818 -23.89419 -22.78699 -21.73551 -21.15916 -20.57038 -19.07168 -18.65930 -17.83359 -17.55083 -17.40197 -17.05677 -16.48871 -16.16781 -16.06673 -15.94693 -15.73226 -15.47682 -15.20317 -14.96418 -14.80782 -14.65082 -14.39287 -13.93357 -13.60103 -13.43598 -13.38005 -13.16208 -12.99073 -12.91614 -12.83507 -12.69960 -12.68593 -12.41350 -12.34042 -11.96411 -11.93566 -11.83394 -11.49305 -11.14493 -11.00411 -10.96784 -10.72910 -10.53576 -10.31208 -10.00413 -8.51511 -8.18446 -5.70625 0.65210 1.35052 1.43217 1.48080 1.50331 1.74533 1.84506 2.33839 2.45109 2.75309 2.89839 3.10234 3.32397 3.50334 3.71942 3.76001 3.82568 3.86996 4.07549 4.13435 4.19409 4.35811 4.40374 4.46219 4.49121 4.57390 4.61541 4.65633 4.73611 4.76006 4.86257 4.89983 4.90919 4.96027 4.96348 5.10851 5.16164 5.17267 5.23685 5.34078 5.37739 5.49432 5.92696 6.18336 6.22936 6.27622 6.30687 6.90658 7.02203 7.23652 7.54080 8.08723 8.96249 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.003796 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.300040 B = 7375.346981 C = 7952.321452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.527 3.473 6 O -0.568 6.568 7 N -0.722 5.722 8 C 0.213 3.787 9 C 0.243 3.757 10 N -0.535 5.535 11 C 0.218 3.782 12 C 0.218 3.782 13 H 0.047 0.953 14 C 0.070 3.930 15 O -0.389 6.389 16 C 0.050 3.950 17 C 0.106 3.894 18 N -0.614 5.614 19 C -0.254 4.254 20 H 0.033 0.967 21 C 0.038 3.962 22 N -0.906 5.906 23 Si 0.873 3.127 24 H -0.219 1.219 25 H -0.311 1.311 26 H -0.288 1.288 27 N -0.240 5.240 28 N -0.459 5.459 29 H 0.446 0.554 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.403 0.597 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.126 0.874 46 H 0.076 0.924 47 H 0.032 0.968 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.543 -2.798 1.181 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.086 4.086 3 C -0.198 4.198 4 C -0.200 4.200 5 C 0.315 3.685 6 O -0.447 6.447 7 N -0.374 5.374 8 C 0.087 3.913 9 C -0.035 4.035 10 N -0.265 5.265 11 C -0.065 4.065 12 C 0.110 3.890 13 H 0.064 0.936 14 C -0.009 4.009 15 O -0.307 6.307 16 C -0.027 4.027 17 C -0.018 4.018 18 N -0.342 5.342 19 C -0.384 4.384 20 H 0.050 0.950 21 C -0.163 4.163 22 N -0.547 5.547 23 Si 0.700 3.300 24 H -0.142 1.142 25 H -0.239 1.239 26 H -0.214 1.214 27 N -0.067 5.067 28 N -0.180 5.180 29 H 0.293 0.707 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.238 0.762 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.144 0.856 46 H 0.095 0.905 47 H 0.050 0.950 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.595 -3.197 1.748 10.264 hybrid contribution -0.171 0.889 -0.861 1.250 sum -9.766 -2.308 0.886 10.074 Atomic orbital electron populations 1.21640 0.90764 1.02548 1.02931 1.20878 0.98753 0.96780 0.92220 1.21895 1.00900 0.92984 1.04028 1.21908 1.00598 1.00839 0.96661 1.21072 0.81002 0.78675 0.87763 1.90668 1.55663 1.50108 1.48237 1.46066 1.07712 1.58466 1.25179 1.19623 0.81085 1.00693 0.89913 1.24157 0.95950 0.88598 0.94841 1.70284 1.01514 1.30070 1.24634 1.23441 0.92139 0.93387 0.97485 1.19761 0.84600 0.90054 0.94579 0.93559 1.22852 0.86538 0.97306 0.94251 1.87842 1.24305 1.33517 1.85075 1.23153 0.91269 0.91634 0.96671 1.21939 0.86753 0.97208 0.95934 1.44376 1.10936 1.04411 1.74457 1.18134 1.08724 0.81270 1.30233 0.94963 1.25933 0.97823 0.95637 0.96902 1.70015 1.21789 1.20923 1.41945 0.86916 0.81341 0.80612 0.81176 1.14214 1.23898 1.21377 1.78329 0.95729 1.12904 1.19780 1.48037 1.04055 1.25014 1.40897 0.70699 0.92505 0.89573 0.92768 0.93085 0.89200 0.91767 0.92066 0.89004 0.93576 0.76181 0.87785 0.87007 0.87316 0.93302 0.93329 0.85631 0.90513 0.94985 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 7.76 71.98 0.56 -1.66 16 2 C -0.08 -1.74 0.87 -52.93 -0.05 -1.78 16 3 C -0.14 -2.64 8.37 71.98 0.60 -2.04 16 4 C -0.14 -2.86 8.37 71.98 0.60 -2.26 16 5 C 0.53 14.00 6.48 87.66 0.57 14.57 16 6 O -0.57 -17.90 15.98 -3.05 -0.05 -17.95 16 7 N -0.72 -19.56 5.33 -466.78 -2.49 -22.05 16 8 C 0.21 5.61 6.30 85.63 0.54 6.15 16 9 C 0.24 8.15 7.60 138.23 1.05 9.20 16 10 N -0.53 -21.46 9.01 -179.72 -1.62 -23.08 16 11 C 0.22 9.48 3.83 138.63 0.53 10.01 16 12 C 0.22 9.47 2.42 44.22 0.11 9.57 16 13 H 0.05 2.13 7.29 -2.39 -0.02 2.11 16 14 C 0.07 2.56 6.27 72.08 0.45 3.01 16 15 O -0.39 -13.74 10.74 -148.98 -1.60 -15.34 16 16 C 0.05 1.61 6.99 72.08 0.50 2.11 16 17 C 0.11 4.13 6.74 86.35 0.58 4.71 16 18 N -0.61 -28.84 2.32 -677.87 -1.57 -30.41 16 19 C -0.25 -13.79 8.16 84.03 0.69 -13.10 16 20 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 21 C 0.04 2.06 3.72 84.86 0.32 2.38 16 22 N -0.91 -50.45 13.97 21.65 0.30 -50.15 16 23 Si 0.87 43.19 24.87 68.60 1.71 44.90 16 24 H -0.22 -10.28 5.17 99.48 0.51 -9.76 16 25 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 26 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 27 N -0.24 -10.54 10.63 -51.33 -0.55 -11.09 16 28 N -0.46 -16.05 7.45 -50.71 -0.38 -16.42 16 29 H 0.45 12.65 8.96 -213.09 -1.91 10.74 16 30 H 0.06 1.10 8.10 -2.38 -0.02 1.08 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 33 H 0.05 1.09 7.56 -2.39 -0.02 1.08 16 34 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.07 7.56 -2.39 -0.02 1.05 16 39 H 0.40 11.85 7.30 -92.71 -0.68 11.17 16 40 H 0.10 2.72 8.14 -2.39 -0.02 2.71 16 41 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 46 H 0.08 2.91 7.96 -2.39 -0.02 2.89 16 47 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -70.12 380.48 -0.99 -71.11 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -1.80 Total: 29.61 kcal Atomic # 6 Polarization: 33.82 SS G_CDS: 7.05 Total: 40.88 kcal Atomic # 7 Polarization: -146.90 SS G_CDS: -6.30 Total: -153.20 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.65 Total: -33.29 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.71 Total: 44.90 kcal Total: -70.12 -0.99 -71.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130863739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.675 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds