Wall clock time and date at job start Tue Mar 31 2020 20:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 N 1.39935 * 125.75459 * 269.69426 * 4 3 2 6 6 C 1.30445 * 108.89588 * 179.84530 * 5 4 3 7 7 C 1.41294 * 108.02622 * 0.40636 * 6 5 4 8 8 C 1.47423 * 126.41955 * 179.71856 * 7 6 5 9 9 O 1.21603 * 120.00057 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99883 * 0.02826 * 8 7 6 11 11 C 1.46497 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47109 * 179.97438 * 11 10 8 13 13 N 1.46895 * 109.47089 * 179.97438 * 12 11 10 14 14 C 1.46899 * 111.00214 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47580 * 180.02562 * 14 13 12 16 16 O 1.21290 * 119.99951 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00083 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00027 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00018 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00164 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99993 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47626 * 89.99443 * 22 20 18 24 24 H 1.48497 * 109.47018 * 210.00087 * 22 20 18 25 25 H 1.48506 * 109.46898 * 329.99544 * 22 20 18 26 26 C 1.34257 * 125.75382 * 90.00013 * 4 3 2 27 27 C 1.50707 * 126.29183 * 359.95729 * 26 4 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 34 34 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 35 35 H 1.07999 * 125.99405 * 180.16772 * 6 5 4 36 36 H 0.97002 * 119.99846 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.46714 * 299.99678 * 11 10 8 38 38 H 1.09000 * 109.47453 * 59.99665 * 11 10 8 39 39 H 1.08996 * 109.46826 * 299.99871 * 12 11 10 40 40 H 1.09000 * 109.47200 * 59.99555 * 12 11 10 41 41 H 1.00904 * 111.00202 * 56.04657 * 13 12 11 42 42 H 1.09000 * 109.46862 * 300.00413 * 14 13 12 43 43 H 1.09002 * 109.46925 * 59.99533 * 14 13 12 44 44 H 0.96996 * 120.00070 * 0.02562 * 17 15 14 45 45 H 0.96995 * 120.00368 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47196 * 89.99968 * 27 26 4 47 47 H 1.08999 * 109.47138 * 210.00189 * 27 26 4 48 48 H 1.09006 * 109.46939 * 330.00183 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3231 1.4485 1.1346 6 6 5.5713 1.4433 0.7558 7 6 5.5996 1.4432 -0.6568 8 6 6.8031 1.4441 -1.5082 9 8 6.6913 1.4444 -2.7191 10 7 8.0273 1.4444 -0.9445 11 6 9.2233 1.4458 -1.7905 12 6 10.4728 1.4466 -0.9073 13 7 11.6720 1.4474 -1.7556 14 6 12.8938 1.4488 -0.9401 15 6 14.1005 1.4502 -1.8428 16 8 13.9568 1.4495 -3.0472 17 7 15.3392 1.4521 -1.3119 18 6 16.4370 1.4528 -2.1332 19 1 16.3091 1.4523 -3.2056 20 6 17.7141 1.4543 -1.5859 21 7 17.8698 1.4555 -0.2810 22 14 19.2099 1.4560 -2.7049 23 1 19.6047 2.8565 -3.0016 24 1 20.3333 0.7572 -2.0306 25 1 18.8807 0.7555 -3.9723 26 6 4.2890 1.4428 -1.0905 27 6 3.8238 1.4421 -2.5240 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 6.4325 1.4434 1.4076 36 1 8.1165 1.4445 0.0215 37 1 9.2237 0.5562 -2.4204 38 1 9.2227 2.3362 -2.4192 39 1 10.4720 2.3364 -0.2777 40 1 10.4736 0.5564 -0.2783 41 1 11.6629 2.2288 -2.3940 42 1 12.9099 2.3390 -0.3113 43 1 12.9115 0.5590 -0.3106 44 1 15.4541 1.4522 -0.3488 45 1 18.7613 1.4569 0.1011 46 1 3.7110 2.4696 -2.8699 47 1 4.5585 0.9286 -3.1441 48 1 2.8654 0.9276 -2.5947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135710207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:00 Heat of formation + Delta-G solvation = -9.610602 kcal Electronic energy + Delta-G solvation = -27334.159684 eV Core-core repulsion = 23232.270476 eV Total energy + Delta-G solvation = -4101.889208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86867 -39.33717 -38.28458 -36.23394 -36.00732 -34.33361 -33.72704 -32.80374 -31.78285 -31.21704 -29.55325 -27.67168 -26.90808 -25.84728 -23.97933 -22.77483 -22.67235 -22.01365 -20.61779 -19.91083 -19.24521 -17.95506 -17.83009 -16.49805 -16.18466 -15.99899 -15.89779 -15.76737 -15.59192 -14.94193 -14.75423 -14.52293 -14.32674 -14.02484 -13.81590 -13.67420 -13.53371 -13.28994 -13.17314 -13.06573 -12.88170 -12.72062 -12.46583 -12.36265 -12.01334 -11.87668 -11.53484 -11.50227 -11.41895 -11.37076 -11.16753 -11.01730 -10.37895 -10.20657 -9.98450 -9.80300 -9.49790 -9.24276 -8.86534 -8.47852 -8.09852 -7.95063 -6.40659 -3.81380 1.17292 1.84450 1.88190 3.05415 3.19240 3.27963 3.29886 3.34364 3.91290 3.92343 4.10311 4.15120 4.19521 4.33922 4.44835 4.50786 4.55671 4.72789 4.78603 4.88002 4.94585 5.01468 5.02946 5.13147 5.15769 5.21304 5.28207 5.34037 5.38696 5.44557 5.47614 5.58594 5.70042 5.75900 5.90355 5.95246 5.98434 6.05849 6.25162 6.34599 6.45505 7.13341 7.16709 7.43197 7.56586 7.60745 8.07439 8.17766 8.62365 9.19135 9.55259 10.06760 10.77112 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042895 B = 0.001366 C = 0.001336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.598939 B =20497.471629 C =20955.303891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.127 3.873 4 N -0.360 5.360 5 N -0.298 5.298 6 C 0.083 3.917 7 C -0.298 4.298 8 C 0.596 3.404 9 O -0.546 6.546 10 N -0.725 5.725 11 C 0.123 3.877 12 C 0.049 3.951 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.160 3.840 27 C -0.101 4.101 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.189 0.811 36 H 0.398 0.602 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.352 0.648 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.049 0.129 5.905 34.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.006 3.994 4 N -0.140 5.140 5 N -0.116 5.116 6 C -0.105 4.105 7 C -0.313 4.313 8 C 0.384 3.616 9 O -0.425 6.425 10 N -0.377 5.377 11 C 0.000 4.000 12 C -0.081 4.081 13 N -0.298 5.298 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C 0.027 3.973 27 C -0.160 4.160 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.206 0.794 36 H 0.231 0.769 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.127 0.873 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -34.971 -0.543 5.257 35.368 hybrid contribution 1.577 0.909 0.548 1.901 sum -33.393 0.365 5.805 33.896 Atomic orbital electron populations 1.21698 0.93974 1.02758 1.02334 1.21947 0.96958 0.95451 1.03693 1.21915 0.73631 0.98921 1.04917 1.48545 1.06714 1.55400 1.03334 1.77180 1.01839 1.25007 1.07587 1.24025 0.95421 0.97227 0.93809 1.19987 0.92906 1.24917 0.93491 1.17134 0.82032 0.75579 0.86904 1.90750 1.86635 1.50989 1.14118 1.45640 1.05486 1.76275 1.10288 1.21255 0.82231 1.03433 0.93128 1.22086 0.89854 1.01010 0.95172 1.59939 0.99563 1.51608 1.18731 1.21668 0.89830 1.01324 0.95206 1.19788 0.84065 0.84567 0.89050 1.90533 1.85790 1.55293 1.14974 1.41849 1.04252 1.64383 1.09516 1.19718 0.83430 1.47553 0.92215 0.87889 1.25255 0.99108 0.97301 0.96221 1.69609 1.24050 1.50661 1.10047 0.85857 0.80274 0.78370 0.79797 1.20433 1.20931 1.19370 1.21546 0.90082 0.94492 0.91150 1.20722 1.02595 1.04233 0.88406 0.92193 0.91752 0.92154 0.90739 0.91144 0.88569 0.88228 0.79385 0.76852 0.90156 0.91347 0.94919 0.90462 0.82820 0.93728 0.89462 0.77460 0.91887 0.89474 0.87294 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 9.91 37.16 0.37 -0.01 16 2 C -0.14 -0.59 6.26 -26.73 -0.17 -0.76 16 3 C 0.13 0.60 6.03 -4.04 -0.02 0.57 16 4 N -0.36 -2.97 3.58 -56.60 -0.20 -3.18 16 5 N -0.30 -2.91 12.50 30.86 0.39 -2.53 16 6 C 0.08 0.72 11.50 -16.98 -0.20 0.53 16 7 C -0.30 -3.04 6.13 -105.07 -0.64 -3.68 16 8 C 0.60 7.07 7.81 -12.52 -0.10 6.98 16 9 O -0.55 -8.18 14.84 5.27 0.08 -8.11 16 10 N -0.73 -7.14 5.55 -61.38 -0.34 -7.48 16 11 C 0.12 1.43 5.93 -4.04 -0.02 1.40 16 12 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 13 N -0.67 -10.55 6.13 -115.06 -0.70 -11.25 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 15 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 16 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 17 N -0.56 -14.27 5.29 -10.97 -0.06 -14.32 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.16 1.46 7.01 -81.60 -0.57 0.88 16 27 C -0.10 -0.72 9.34 36.01 0.34 -0.38 16 28 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.27 7.62 -51.93 -0.40 -0.13 16 34 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.19 0.99 7.50 -52.49 -0.39 0.60 16 36 H 0.40 2.75 7.43 -40.82 -0.30 2.45 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.11 0.99 6.50 -51.93 -0.34 0.65 16 48 H 0.07 0.32 7.70 -51.93 -0.40 -0.08 16 LS Contribution 406.86 15.07 6.13 6.13 Total: -1.00 -35.58 406.86 -7.81 -43.39 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -7.49 Total: 11.66 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.40 Total: 9.23 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.20 Total: -62.56 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.17 Total: -23.93 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.58 -7.81 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135710207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.780 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds